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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 88  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0600
GLU 270.0129
PRO 280.0114
CYS 290.0082
VAL 300.0108
GLU 310.0118
VAL 320.0138
VAL 330.0127
PRO 340.0116
ASN 350.0070
ILE 360.0055
THR 370.0063
TYR 380.0041
GLN 390.0045
CYS 400.0017
MET 410.0031
GLU 420.0035
LEU 430.0024
ASN 440.0028
PHE 450.0034
TYR 460.0052
LYS 470.0075
ILE 480.0065
PRO 490.0054
ASP 500.0098
ASN 510.0106
LEU 520.0066
PRO 530.0055
PHE 540.0059
SER 550.0030
THR 560.0017
LYS 570.0045
ASN 580.0049
LEU 590.0040
ASP 600.0043
LEU 610.0042
SER 620.0050
PHE 630.0054
ASN 640.0052
PRO 650.0058
LEU 660.0058
ARG 670.0048
HIS 680.0043
LEU 690.0044
GLY 700.0045
SER 710.0043
TYR 720.0051
SER 730.0049
PHE 740.0055
PHE 750.0059
SER 760.0065
PHE 770.0061
PRO 780.0076
GLU 790.0067
LEU 800.0061
GLN 810.0069
VAL 820.0063
LEU 830.0059
ASP 840.0056
LEU 850.0052
SER 860.0050
ARG 870.0051
CYS 880.0051
GLU 890.0044
ILE 900.0039
GLN 910.0033
THR 920.0026
ILE 930.0025
GLU 940.0028
ASP 950.0023
GLY 960.0028
ALA 970.0039
TYR 980.0045
GLN 990.0047
SER 1000.0055
LEU 1010.0057
SER 1020.0060
HIS 1030.0067
LEU 1040.0057
SER 1050.0060
THR 1060.0052
LEU 1070.0040
ILE 1080.0042
LEU 1090.0031
THR 1100.0038
GLY 1110.0035
ASN 1120.0029
PRO 1130.0018
ILE 1140.0014
GLN 1150.0022
SER 1160.0028
LEU 1170.0017
ALA 1180.0025
LEU 1190.0030
GLY 1200.0018
ALA 1210.0011
PHE 1220.0013
SER 1230.0016
GLY 1240.0028
LEU 1250.0030
SER 1260.0034
SER 1270.0035
LEU 1280.0028
GLN 1290.0041
LYS 1300.0044
LEU 1310.0034
VAL 1320.0039
ALA 1330.0035
VAL 1340.0049
GLU 1350.0049
THR 1360.0036
ASN 1370.0058
LEU 1380.0061
ALA 1390.0072
SER 1400.0075
LEU 1410.0071
GLU 1420.0071
ASN 1430.0064
PHE 1440.0053
PRO 1450.0042
ILE 1460.0036
GLY 1470.0046
HIS 1480.0033
LEU 1490.0019
LYS 1500.0025
THR 1510.0019
LEU 1520.0029
LYS 1530.0042
GLU 1540.0050
LEU 1550.0050
ASN 1560.0059
VAL 1570.0063
ALA 1580.0073
HIS 1590.0078
ASN 1600.0076
LEU 1610.0083
ILE 1620.0077
GLN 1630.0073
SER 1640.0065
PHE 1650.0061
LYS 1660.0059
LEU 1670.0069
PRO 1680.0069
GLU 1690.0065
TYR 1700.0062
PHE 1710.0060
SER 1720.0063
ASN 1730.0050
LEU 1740.0043
THR 1750.0041
ASN 1760.0033
LEU 1770.0038
GLU 1780.0042
HIS 1790.0051
LEU 1800.0056
ASP 1810.0064
LEU 1820.0057
SER 1830.0063
SER 1840.0070
ASN 1850.0069
LYS 1860.0072
ILE 1870.0053
GLN 1880.0046
SER 1890.0046
ILE 1900.0051
TYR 1910.0049
CYS 1920.0049
THR 1930.0048
ASP 1940.0057
LEU 1950.0057
ARG 1960.0051
VAL 1970.0054
LEU 1980.0056
HIS 1990.0047
GLN 2000.0046
MET 2010.0052
PRO 2020.0038
LEU 2030.0036
LEU 2040.0030
ASN 2050.0027
LEU 2060.0026
SER 2070.0030
LEU 2080.0029
ASP 2090.0035
LEU 2100.0033
SER 2110.0039
LEU 2120.0046
ASN 2130.0046
PRO 2140.0042
MET 2150.0045
ASN 2160.0043
PHE 2170.0055
ILE 2180.0061
GLN 2190.0057
PRO 2200.0068
GLY 2210.0073
ALA 2220.0064
PHE 2230.0071
LYS 2240.0077
GLU 2250.0084
ILE 2260.0080
ARG 2270.0056
LEU 2280.0052
HIS 2290.0053
LYS 2300.0048
LEU 2310.0042
THR 2320.0045
LEU 2330.0053
ARG 2340.0051
ASN 2350.0059
ASN 2360.0069
PHE 2370.0081
ASP 2380.0083
SER 2390.0081
LEU 2400.0077
ASN 2410.0082
VAL 2420.0081
MET 2430.0079
LYS 2440.0079
THR 2450.0082
CYS 2460.0082
ILE 2470.0081
GLN 2480.0082
GLY 2490.0084
LEU 2500.0082
ALA 2510.0082
GLY 2520.0074
LEU 2530.0072
GLU 2540.0069
VAL 2550.0065
HIS 2560.0063
ARG 2570.0060
LEU 2580.0059
VAL 2590.0057
LEU 2600.0055
GLY 2610.0052
GLU 2620.0050
PHE 2630.0067
ARG 2640.0083
ASN 2650.0101
GLU 2660.0097
GLY 2670.0097
ASN 2680.0078
LEU 2690.0070
GLU 2700.0066
LYS 2710.0056
PHE 2720.0043
ASP 2730.0045
LYS 2740.0046
SER 2750.0065
ALA 2760.0063
LEU 2770.0057
GLU 2780.0066
GLY 2790.0080
LEU 2800.0070
CYS 2810.0070
ASN 2820.0075
LEU 2830.0074
THR 2840.0068
ILE 2850.0062
GLU 2860.0059
GLU 2870.0049
PHE 2880.0045
ARG 2890.0050
LEU 2900.0044
ALA 2910.0057
TYR 2920.0056
LEU 2930.0042
ASP 2940.0046
TYR 2950.0024
TYR 2960.0021
LEU 2970.0036
ASP 2980.0046
GLY 2990.0041
ILE 3000.0026
ILE 3010.0032
ASP 3020.0027
LEU 3030.0015
PHE 3040.0016
ASN 3050.0024
CYS 3060.0041
LEU 3070.0028
THR 3080.0016
ASN 3090.0027
VAL 3100.0038
SER 3110.0044
SER 3120.0044
PHE 3130.0039
SER 3140.0051
LEU 3150.0050
VAL 3160.0065
SER 3170.0078
VAL 3180.0064
THR 3190.0068
ILE 3200.0062
GLU 3210.0074
ARG 3220.0074
VAL 3230.0073
LYS 3240.0074
ASP 3250.0056
PHE 3260.0056
SER 3270.0054
TYR 3280.0037
ASN 3290.0030
PHE 3300.0023
GLY 3310.0023
TRP 3320.0034
GLN 3330.0042
HIS 3340.0050
LEU 3350.0051
GLU 3360.0060
LEU 3370.0073
VAL 3380.0087
ASN 3390.0102
CYS 3400.0096
LYS 3410.0106
PHE 3420.0103
GLY 3430.0111
GLN 3440.0104
PHE 3450.0092
PRO 3460.0083
THR 3470.0077
LEU 3480.0068
LYS 3490.0060
LEU 3500.0052
LYS 3510.0045
SER 3520.0045
LEU 3530.0048
LYS 3540.0048
ARG 3550.0053
LEU 3560.0057
THR 3570.0064
PHE 3580.0074
THR 3590.0080
SER 3600.0092
ASN 3610.0096
LYS 3620.0112
GLY 3630.0116
GLY 3640.0110
ASN 3650.0090
ALA 3660.0085
PHE 3670.0069
SER 3680.0076
GLU 3690.0071
VAL 3700.0068
ASP 3710.0065
LEU 3720.0058
PRO 3730.0055
SER 3740.0053
LEU 3750.0052
GLU 3760.0047
PHE 3770.0041
LEU 3780.0042
ASP 3790.0042
LEU 3800.0043
SER 3810.0042
ARG 3820.0053
ASN 3830.0054
GLY 3840.0040
LEU 3850.0038
SER 3860.0037
PHE 3870.0035
LYS 3880.0067
GLY 3890.0083
CYS 3900.0054
CYS 3910.0044
SER 3920.0059
GLN 3930.0065
SER 3940.0081
ASP 3950.0064
PHE 3960.0059
GLY 3970.0067
THR 3980.0055
ILE 3990.0050
SER 4000.0041
LEU 4010.0036
LYS 4020.0018
TYR 4030.0016
LEU 4040.0010
ASP 4050.0014
LEU 4060.0004
SER 4070.0028
PHE 4080.0046
ASN 4090.0028
GLY 4100.0036
VAL 4110.0052
ILE 4120.0049
THR 4130.0071
MET 4140.0075
SER 4150.0089
SER 4160.0079
ASN 4170.0072
PHE 4180.0051
LEU 4190.0065
GLY 4200.0059
LEU 4210.0036
GLU 4220.0038
GLN 4230.0020
LEU 4240.0019
GLU 4250.0027
HIS 4260.0034
LEU 4270.0037
ASP 4280.0046
PHE 4290.0049
GLN 4300.0064
HIS 4310.0068
SER 4320.0066
ASN 4330.0079
LEU 4340.0076
LYS 4350.0091
GLN 4360.0104
MET 4370.0084
SER 4380.0101
GLU 4390.0101
PHE 4400.0089
SER 4410.0075
VAL 4420.0074
PHE 4430.0063
LEU 4440.0067
SER 4450.0054
LEU 4460.0044
ARG 4470.0045
ASN 4480.0037
LEU 4490.0048
ILE 4500.0057
TYR 4510.0066
LEU 4520.0072
ASP 4530.0074
ILE 4540.0075
SER 4550.0078
HIS 4560.0080
THR 4570.0087
HIS 4580.0092
THR 4590.0085
ARG 4600.0086
VAL 4610.0078
ALA 4620.0076
PHE 4630.0072
ASN 4640.0066
GLY 4650.0068
ILE 4660.0073
PHE 4670.0070
ASN 4680.0066
GLY 4690.0058
LEU 4700.0058
SER 4710.0055
SER 4720.0059
LEU 4730.0064
GLU 4740.0067
VAL 4750.0073
LEU 4760.0074
LYS 4770.0072
MET 4780.0073
ALA 4790.0075
GLY 4800.0079
ASN 4810.0078
SER 4820.0073
PHE 4830.0059
GLN 4840.0072
GLU 4850.0070
ASN 4860.0049
PHE 4870.0039
LEU 4880.0031
PRO 4890.0036
ASP 4900.0031
ILE 4910.0053
PHE 4920.0043
THR 4930.0035
GLU 4940.0045
LEU 4950.0052
ARG 4960.0049
ASN 4970.0057
LEU 4980.0055
THR 4990.0061
PHE 5000.0062
LEU 5010.0053
ASP 5020.0049
LEU 5030.0045
SER 5040.0043
GLN 5050.0045
CYS 5060.0047
GLN 5070.0038
LEU 5080.0024
GLU 5090.0027
GLN 5100.0029
LEU 5110.0020
SER 5120.0027
PRO 5130.0030
THR 5140.0020
ALA 5150.0005
PHE 5160.0015
ASN 5170.0016
SER 5180.0019
LEU 5190.0034
SER 5200.0046
SER 5210.0060
LEU 5220.0046
GLN 5230.0057
VAL 5240.0048
LEU 5250.0029
ASN 5260.0029
MET 5270.0006
SER 5280.0007
HIS 5290.0013
ASN 5300.0015
ASN 5310.0020
PHE 5320.0023
PHE 5330.0033
SER 5340.0039
LEU 5350.0039
ASP 5360.0043
THR 5370.0050
PHE 5380.0053
PRO 5390.0035
TYR 5400.0041
LYS 5410.0057
CYS 5420.0049
LEU 5430.0049
ASN 5440.0067
SER 5450.0069
LEU 5460.0056
GLN 5470.0052
VAL 5480.0038
LEU 5490.0027
ASP 5500.0020
TYR 5510.0020
SER 5520.0025
LEU 5530.0028
ASN 5540.0029
HIS 5550.0033
ILE 5560.0031
MET 5570.0034
THR 5580.0045
SER 5590.0054
LYS 5600.0059
LYS 5610.0066
GLN 5620.0069
GLU 5630.0069
LEU 5640.0064
GLN 5650.0074
HIS 5660.0070
PHE 5670.0056
PRO 5680.0060
SER 5690.0075
SER 5700.0070
LEU 5710.0056
ALA 5720.0025
PHE 5730.0027
LEU 5740.0028
ASN 5750.0033
LEU 5760.0035
THR 5770.0049
GLN 5780.0047
ASN 5790.0042
ASP 5800.0041
PHE 5810.0040
ALA 5820.0049
CYS 5830.0047
THR 5840.0051
CYS 5850.0061
GLU 5860.0058
HIS 5870.0035
GLN 5880.0041
SER 5890.0041
PHE 5900.0040
LEU 5910.0044
GLN 5920.0041
TRP 5930.0043
ILE 5940.0055
LYS 5950.0063
ASP 5960.0063
GLN 5970.0047
ARG 5980.0047
GLN 5990.0053
LEU 6000.0052
LEU 6010.0047
VAL 6020.0076
GLU 6030.0075
VAL 6040.0072
GLU 6050.0072
ARG 6060.0071
MET 6070.0060
GLU 6080.0053
CYS 6090.0044
ALA 6100.0055
THR 6110.0060
PRO 6120.0075
SER 6130.0083
ASP 6140.0076
LYS 6150.0059
GLN 6160.0059
GLY 6170.0057
MET 6180.0052
PRO 6190.0063
VAL 6200.0057
LEU 6210.0074
SER 6220.0095
LEU 6230.0070
ASN 6240.0084
ILE 6250.0078
THR 6260.0102
CYS 6270.0170
GLU 10.0061
ALA 20.0050
ALA 30.0052
ALA 40.0061
LYS 50.0054
MET 60.0045
GLN 70.0052
ARG 80.0050
LEU 90.0045
VAL 100.0050
LEU 110.0030
LEU 120.0028
LEU 130.0034
ALA 140.0037
ILE 150.0033
SER 160.0016
LEU 170.0028
LEU 180.0039
LEU 190.0021
TYR 200.0022
GLN 210.0048
ASP 220.0047
LEU 230.0035
PRO 240.0048
VAL 250.0049
ARG 260.0063
SER 270.0057
GLU 280.0072
PHE 290.0068
GLU 300.0056
LEU 310.0053
ASP 320.0050
ARG 330.0047
ILE 340.0046
CYS 350.0043
GLY 360.0035
TYR 370.0036
GLY 380.0041
THR 390.0046
ALA 400.0043
ARG 410.0035
CYS 420.0034
ARG 430.0063
LYS 440.0088
LYS 450.0092
CYS 460.0062
ARG 470.0064
SER 480.0067
GLN 490.0067
GLU 500.0065
TYR 510.0081
ARG 520.0071
ILE 530.0045
GLY 540.0055
ARG 550.0064
CYS 560.0035
PRO 570.0046
ASN 580.0042
THR 590.0079
TYR 600.0075
ALA 610.0049
CYS 620.0045
CYS 630.0054
LEU 640.0057
ARG 650.0067
LYS 660.0104
TRP 670.0128
ASP 680.0098
GLU 690.0100
SER 700.0087
LEU 710.0113
LEU 720.0121
ASN 730.0088
ARG 740.0095
THR 750.0127
LYS 760.0108
PRO 770.0128
GLU 780.0092
ALA 790.0138
ALA 800.0176
ALA 810.0365
LYS 820.0278
LYS 830.0227
GLU 840.0140
MET 850.0095
ASN 860.0160
LEU 870.0138
SER 880.0141
VAL 890.0144
GLY 900.0137
LEU 910.0098
GLY 920.0180
GLY 930.0184
GLY 940.0178
SER 950.0126
ASN 960.0193
LEU 970.0200
SER 980.0192
VAL 990.0185
GLY 1000.0189
LEU 1010.0105
GLY 1020.0223
GLU 1030.0320
ILE 1040.0464
GLY 1050.0563
GLY 1060.0275
GLY 1070.0303
SER 1080.0308
LYS 1090.0258
LEU 1100.0306
LEU 1110.0182
ASP 1120.0152
ILE 1130.0141
ASN 1140.0160
LEU 1150.0193
GLY 1160.0309
ARG 1170.0397
GLY 1180.0467
GLY 1190.0538
GLY 1200.0423
SER 1210.0133
MET 1220.0109
VAL 1230.0092
ASP 1240.0087
LEU 1250.0117
THR 1260.0111
PHE 1270.0074
GLY 1280.0099
GLY 1290.0091
VAL 1300.0123
GLY 1310.0306
GLY 1320.0190
GLY 1330.0144
SER 1340.0040
THR 1350.0139
PHE 1360.0076
THR 1370.0101
PHE 1380.0067
PHE 1390.0089
PRO 1400.0068
LEU 1410.0169
VAL 1420.0348
ILE 1430.0209
GLY 1440.0359
GLY 1450.0293
GLY 1460.0426
SER 1470.0393
ASP 1480.0359
ALA 1490.0242
MET 1500.0130
TYR 1510.0144
LEU 1520.0107
GLY 1530.0116
PHE 1540.0119
ALA 1550.0172
ALA 1560.0263
GLY 1570.0301
GLY 1580.0227
GLY 1590.0323
SER 1600.0404
ALA 1610.0196
GLY 1620.0151
GLY 1630.0079
GLU 1640.0092
ASN 1650.0125
HIS 1660.0114
VAL 1670.0109
ALA 1680.0083
PHE 1690.0096
GLY 1700.0100
PRO 1710.0189
GLY 1720.0169
PRO 1730.0215
GLY 1740.0189
VAL 1750.0167
ASP 1760.0139
LEU 1770.0118
THR 1780.0164
PHE 1790.0231
GLY 1800.0325
GLY 1810.0524
VAL 1820.0429
GLN 1830.0247
PHE 1840.0202
ALA 1850.0186
MET 1860.0457
VAL 1870.0506
ASN 1880.0266
ASN 1890.0109
GLY 1900.0383
PRO 1910.0330
GLY 1920.0272
PRO 1930.0289
GLY 1940.0191
GLU 1950.0056
SER 1960.0343
PHE 1970.0268
THR 1980.0197
ALA 1990.0148
GLN 2000.0161
PRO 2010.0084
ALA 2020.0088
ASP 2030.0139
MET 2040.0048
GLN 2050.0165
ALA 2060.0185
GLY 2070.0161
ILE 2080.0243
LYS 2090.0190
GLY 2100.0345
PRO 2110.0152
GLY 2120.0137
PRO 2130.0083
GLY 2140.0168
GLY 2150.0133
SER 2160.0200
ILE 2170.0229
GLN 2180.0078
VAL 2190.0178
ILE 2200.0122
ASN 2210.0600
GLY 2220.0356
SER 2230.0167
THR 2240.0143
ILE 2250.0177
GLY 2260.0171
THR 2270.0180
GLY 2280.0120
SER 2290.0132
LYS 2300.0136
LYS 2310.0153
THR 2320.0163
ILE 2330.0194
LEU 2340.0205
ILE 2350.0236
TYR 2360.0276
SER 2370.0294
ILE 2380.0282
ILE 2390.0168
GLY 2400.0198
VAL 2410.0229
LYS 2420.0159
LYS 2430.0144
GLY 2440.0186
THR 2450.0195
LEU 2460.0263
ALA 2470.0139
TRP 2480.0114
ALA 2490.0019
ARG 2500.0043
THR 2510.0355
GLY 2520.0322
PHE 2530.0317
SER 2540.0308
PRO 2550.0248
ALA 2560.0079
LYS 2570.0057
LYS 2580.0023
LEU 2590.0146
ASN 2600.0221
ALA 2610.0305
GLY 2620.0191
VAL 2630.0091
VAL 2640.0183
ARG 2650.0320
VAL 2660.0261
PHE 2670.0251
PHE 2680.0285
LEU 2690.0262
ASN 2700.0281
GLN 2710.0146
LYS 2720.0124
LYS 2730.0208
ALA 2740.0182
LYS 2750.0114
ASP 2760.0179
VAL 2770.0185
LEU 2780.0124
ARG 2790.0114
LYS 2800.0174
THR 2810.0194
SER 2820.0115
ARG 2830.0090
PRO 2840.0072
MET 2850.0108
VAL 2860.0108
ASP 2870.0092
LEU 2880.0114
THR 2890.0111
PHE 2900.0082
GLY 2910.0148
GLY 2920.0191

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.