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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 89  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0510
GLU 270.0094
PRO 280.0072
CYS 290.0040
VAL 300.0044
GLU 310.0077
VAL 320.0106
VAL 330.0129
PRO 340.0130
ASN 350.0111
ILE 360.0095
THR 370.0072
TYR 380.0039
GLN 390.0049
CYS 400.0058
MET 410.0090
GLU 420.0112
LEU 430.0102
ASN 440.0112
PHE 450.0093
TYR 460.0103
LYS 470.0115
ILE 480.0083
PRO 490.0068
ASP 500.0087
ASN 510.0086
LEU 520.0066
PRO 530.0069
PHE 540.0058
SER 550.0057
THR 560.0040
LYS 570.0036
ASN 580.0042
LEU 590.0038
ASP 600.0057
LEU 610.0070
SER 620.0087
PHE 630.0097
ASN 640.0092
PRO 650.0094
LEU 660.0082
ARG 670.0058
HIS 680.0046
LEU 690.0044
GLY 700.0036
SER 710.0032
TYR 720.0046
SER 730.0050
PHE 740.0038
PHE 750.0030
SER 760.0025
PHE 770.0031
PRO 780.0027
GLU 790.0016
LEU 800.0024
GLN 810.0036
VAL 820.0045
LEU 830.0048
ASP 840.0054
LEU 850.0060
SER 860.0067
ARG 870.0066
CYS 880.0063
GLU 890.0051
ILE 900.0050
GLN 910.0042
THR 920.0038
ILE 930.0038
GLU 940.0037
ASP 950.0037
GLY 960.0038
ALA 970.0044
TYR 980.0042
GLN 990.0043
SER 1000.0041
LEU 1010.0040
SER 1020.0049
HIS 1030.0047
LEU 1040.0043
SER 1050.0042
THR 1060.0038
LEU 1070.0041
ILE 1080.0041
LEU 1090.0035
THR 1100.0042
GLY 1110.0042
ASN 1120.0043
PRO 1130.0040
ILE 1140.0037
GLN 1150.0043
SER 1160.0043
LEU 1170.0051
ALA 1180.0056
LEU 1190.0052
GLY 1200.0048
ALA 1210.0041
PHE 1220.0035
SER 1230.0045
GLY 1240.0048
LEU 1250.0037
SER 1260.0043
SER 1270.0043
LEU 1280.0030
GLN 1290.0031
LYS 1300.0029
LEU 1310.0018
VAL 1320.0033
ALA 1330.0028
VAL 1340.0041
GLU 1350.0044
THR 1360.0035
ASN 1370.0056
LEU 1380.0060
ALA 1390.0077
SER 1400.0079
LEU 1410.0071
GLU 1420.0074
ASN 1430.0071
PHE 1440.0053
PRO 1450.0044
ILE 1460.0029
GLY 1470.0048
HIS 1480.0041
LEU 1490.0020
LYS 1500.0015
THR 1510.0014
LEU 1520.0010
LYS 1530.0028
GLU 1540.0034
LEU 1550.0031
ASN 1560.0040
VAL 1570.0057
ALA 1580.0068
HIS 1590.0072
ASN 1600.0071
LEU 1610.0082
ILE 1620.0086
GLN 1630.0082
SER 1640.0079
PHE 1650.0079
LYS 1660.0077
LEU 1670.0084
PRO 1680.0080
GLU 1690.0070
TYR 1700.0063
PHE 1710.0059
SER 1720.0057
ASN 1730.0042
LEU 1740.0034
THR 1750.0028
ASN 1760.0024
LEU 1770.0031
GLU 1780.0042
HIS 1790.0049
LEU 1800.0052
ASP 1810.0060
LEU 1820.0067
SER 1830.0073
SER 1840.0077
ASN 1850.0075
LYS 1860.0081
ILE 1870.0075
GLN 1880.0062
SER 1890.0063
ILE 1900.0073
TYR 1910.0073
CYS 1920.0075
THR 1930.0072
ASP 1940.0082
LEU 1950.0087
ARG 1960.0080
VAL 1970.0074
LEU 1980.0077
HIS 1990.0070
GLN 2000.0062
MET 2010.0064
PRO 2020.0057
LEU 2030.0053
LEU 2040.0050
ASN 2050.0045
LEU 2060.0044
SER 2070.0058
LEU 2080.0058
ASP 2090.0060
LEU 2100.0060
SER 2110.0064
LEU 2120.0068
ASN 2130.0066
PRO 2140.0056
MET 2150.0055
ASN 2160.0046
PHE 2170.0057
ILE 2180.0073
GLN 2190.0073
PRO 2200.0086
GLY 2210.0101
ALA 2220.0095
PHE 2230.0104
LYS 2240.0112
GLU 2250.0126
ILE 2260.0123
ARG 2270.0086
LEU 2280.0082
HIS 2290.0084
LYS 2300.0075
LEU 2310.0068
THR 2320.0070
LEU 2330.0063
ARG 2340.0057
ASN 2350.0051
ASN 2360.0053
PHE 2370.0038
ASP 2380.0020
SER 2390.0010
LEU 2400.0034
ASN 2410.0041
VAL 2420.0037
MET 2430.0051
LYS 2440.0066
THR 2450.0067
CYS 2460.0073
ILE 2470.0079
GLN 2480.0088
GLY 2490.0092
LEU 2500.0101
ALA 2510.0111
GLY 2520.0112
LEU 2530.0105
GLU 2540.0101
VAL 2550.0090
HIS 2560.0087
ARG 2570.0080
LEU 2580.0072
VAL 2590.0066
LEU 2600.0056
GLY 2610.0049
GLU 2620.0037
PHE 2630.0052
ARG 2640.0053
ASN 2650.0076
GLU 2660.0071
GLY 2670.0054
ASN 2680.0033
LEU 2690.0015
GLU 2700.0035
LYS 2710.0041
PHE 2720.0031
ASP 2730.0049
LYS 2740.0061
SER 2750.0071
ALA 2760.0057
LEU 2770.0060
GLU 2780.0078
GLY 2790.0088
LEU 2800.0088
CYS 2810.0103
ASN 2820.0105
LEU 2830.0102
THR 2840.0099
ILE 2850.0082
GLU 2860.0080
GLU 2870.0065
PHE 2880.0055
ARG 2890.0053
LEU 2900.0043
ALA 2910.0048
TYR 2920.0036
LEU 2930.0023
ASP 2940.0030
TYR 2950.0030
TYR 2960.0035
LEU 2970.0035
ASP 2980.0041
GLY 2990.0038
ILE 3000.0039
ILE 3010.0048
ASP 3020.0048
LEU 3030.0039
PHE 3040.0043
ASN 3050.0055
CYS 3060.0066
LEU 3070.0049
THR 3080.0042
ASN 3090.0056
VAL 3100.0062
SER 3110.0068
SER 3120.0058
PHE 3130.0047
SER 3140.0044
LEU 3150.0034
VAL 3160.0036
SER 3170.0036
VAL 3180.0030
THR 3190.0032
ILE 3200.0031
GLU 3210.0037
ARG 3220.0032
VAL 3230.0035
LYS 3240.0036
ASP 3250.0042
PHE 3260.0047
SER 3270.0034
TYR 3280.0031
ASN 3290.0035
PHE 3300.0043
GLY 3310.0049
TRP 3320.0051
GLN 3330.0062
HIS 3340.0060
LEU 3350.0050
GLU 3360.0049
LEU 3370.0035
VAL 3380.0033
ASN 3390.0032
CYS 3400.0033
LYS 3410.0034
PHE 3420.0035
GLY 3430.0034
GLN 3440.0036
PHE 3450.0040
PRO 3460.0046
THR 3470.0057
LEU 3480.0061
LYS 3490.0065
LEU 3500.0069
LYS 3510.0074
SER 3520.0072
LEU 3530.0069
LYS 3540.0072
ARG 3550.0069
LEU 3560.0063
THR 3570.0046
PHE 3580.0037
THR 3590.0026
SER 3600.0017
ASN 3610.0020
LYS 3620.0017
GLY 3630.0024
GLY 3640.0028
ASN 3650.0023
ALA 3660.0029
PHE 3670.0048
SER 3680.0062
GLU 3690.0073
VAL 3700.0074
ASP 3710.0087
LEU 3720.0084
PRO 3730.0088
SER 3740.0087
LEU 3750.0081
GLU 3760.0079
PHE 3770.0071
LEU 3780.0055
ASP 3790.0042
LEU 3800.0028
SER 3810.0023
ARG 3820.0034
ASN 3830.0025
GLY 3840.0029
LEU 3850.0023
SER 3860.0034
PHE 3870.0050
LYS 3880.0084
GLY 3890.0097
CYS 3900.0067
CYS 3910.0058
SER 3920.0083
GLN 3930.0094
SER 3940.0108
ASP 3950.0087
PHE 3960.0083
GLY 3970.0097
THR 3980.0091
ILE 3990.0092
SER 4000.0089
LEU 4010.0078
LYS 4020.0069
TYR 4030.0058
LEU 4040.0040
ASP 4050.0037
LEU 4060.0028
SER 4070.0049
PHE 4080.0067
ASN 4090.0057
GLY 4100.0063
VAL 4110.0065
ILE 4120.0058
THR 4130.0081
MET 4140.0078
SER 4150.0098
SER 4160.0087
ASN 4170.0075
PHE 4180.0059
LEU 4190.0083
GLY 4200.0089
LEU 4210.0064
GLU 4220.0064
GLN 4230.0067
LEU 4240.0048
GLU 4250.0054
HIS 4260.0056
LEU 4270.0041
ASP 4280.0050
PHE 4290.0052
GLN 4300.0068
HIS 4310.0077
SER 4320.0071
ASN 4330.0082
LEU 4340.0074
LYS 4350.0091
GLN 4360.0107
MET 4370.0076
SER 4380.0096
GLU 4390.0097
PHE 4400.0080
SER 4410.0059
VAL 4420.0064
PHE 4430.0047
LEU 4440.0056
SER 4450.0048
LEU 4460.0031
ARG 4470.0037
ASN 4480.0034
LEU 4490.0039
ILE 4500.0059
TYR 4510.0068
LEU 4520.0066
ASP 4530.0068
ILE 4540.0068
SER 4550.0071
HIS 4560.0072
THR 4570.0076
HIS 4580.0076
THR 4590.0072
ARG 4600.0070
VAL 4610.0066
ALA 4620.0068
PHE 4630.0066
ASN 4640.0064
GLY 4650.0063
ILE 4660.0066
PHE 4670.0067
ASN 4680.0068
GLY 4690.0060
LEU 4700.0057
SER 4710.0060
SER 4720.0065
LEU 4730.0068
GLU 4740.0071
VAL 4750.0073
LEU 4760.0074
LYS 4770.0064
MET 4780.0062
ALA 4790.0058
GLY 4800.0057
ASN 4810.0060
SER 4820.0046
PHE 4830.0044
GLN 4840.0053
GLU 4850.0048
ASN 4860.0031
PHE 4870.0042
LEU 4880.0036
PRO 4890.0053
ASP 4900.0059
ILE 4910.0075
PHE 4920.0071
THR 4930.0079
GLU 4940.0087
LEU 4950.0080
ARG 4960.0084
ASN 4970.0083
LEU 4980.0073
THR 4990.0068
PHE 5000.0060
LEU 5010.0055
ASP 5020.0042
LEU 5030.0034
SER 5040.0022
GLN 5050.0018
CYS 5060.0030
GLN 5070.0024
LEU 5080.0024
GLU 5090.0036
GLN 5100.0035
LEU 5110.0025
SER 5120.0052
PRO 5130.0039
THR 5140.0042
ALA 5150.0043
PHE 5160.0033
ASN 5170.0043
SER 5180.0061
LEU 5190.0057
SER 5200.0060
SER 5210.0071
LEU 5220.0046
GLN 5230.0049
VAL 5240.0037
LEU 5250.0022
ASN 5260.0015
MET 5270.0020
SER 5280.0030
HIS 5290.0034
ASN 5300.0030
ASN 5310.0038
PHE 5320.0041
PHE 5330.0052
SER 5340.0055
LEU 5350.0051
ASP 5360.0051
THR 5370.0050
PHE 5380.0051
PRO 5390.0033
TYR 5400.0020
LYS 5410.0030
CYS 5420.0015
LEU 5430.0020
ASN 5440.0041
SER 5450.0048
LEU 5460.0033
GLN 5470.0039
VAL 5480.0035
LEU 5490.0031
ASP 5500.0034
TYR 5510.0042
SER 5520.0054
LEU 5530.0058
ASN 5540.0052
HIS 5550.0051
ILE 5560.0045
MET 5570.0045
THR 5580.0060
SER 5590.0071
LYS 5600.0083
LYS 5610.0093
GLN 5620.0102
GLU 5630.0095
LEU 5640.0083
GLN 5650.0093
HIS 5660.0078
PHE 5670.0048
PRO 5680.0036
SER 5690.0058
SER 5700.0051
LEU 5710.0048
ALA 5720.0046
PHE 5730.0049
LEU 5740.0048
ASN 5750.0052
LEU 5760.0054
THR 5770.0058
GLN 5780.0055
ASN 5790.0048
ASP 5800.0043
PHE 5810.0031
ALA 5820.0025
CYS 5830.0033
THR 5840.0045
CYS 5850.0049
GLU 5860.0033
HIS 5870.0019
GLN 5880.0032
SER 5890.0047
PHE 5900.0054
LEU 5910.0049
GLN 5920.0062
TRP 5930.0073
ILE 5940.0071
LYS 5950.0082
ASP 5960.0096
GLN 5970.0073
ARG 5980.0058
GLN 5990.0069
LEU 6000.0070
LEU 6010.0049
VAL 6020.0087
GLU 6030.0069
VAL 6040.0059
GLU 6050.0043
ARG 6060.0040
MET 6070.0041
GLU 6080.0019
CYS 6090.0024
ALA 6100.0038
THR 6110.0058
PRO 6120.0084
SER 6130.0110
ASP 6140.0122
LYS 6150.0088
GLN 6160.0067
GLY 6170.0048
MET 6180.0061
PRO 6190.0058
VAL 6200.0052
LEU 6210.0087
SER 6220.0128
LEU 6230.0098
ASN 6240.0126
ILE 6250.0098
THR 6260.0134
CYS 6270.0216
GLU 10.0121
ALA 20.0101
ALA 30.0084
ALA 40.0107
LYS 50.0114
MET 60.0081
GLN 70.0097
ARG 80.0097
LEU 90.0083
VAL 100.0090
LEU 110.0055
LEU 120.0040
LEU 130.0057
ALA 140.0072
ILE 150.0063
SER 160.0036
LEU 170.0029
LEU 180.0051
LEU 190.0044
TYR 200.0026
GLN 210.0057
ASP 220.0066
LEU 230.0063
PRO 240.0072
VAL 250.0063
ARG 260.0085
SER 270.0076
GLU 280.0087
PHE 290.0080
GLU 300.0070
LEU 310.0073
ASP 320.0075
ARG 330.0074
ILE 340.0073
CYS 350.0075
GLY 360.0063
TYR 370.0081
GLY 380.0083
THR 390.0087
ALA 400.0067
ARG 410.0063
CYS 420.0068
ARG 430.0088
LYS 440.0112
LYS 450.0108
CYS 460.0078
ARG 470.0072
SER 480.0067
GLN 490.0061
GLU 500.0067
TYR 510.0073
ARG 520.0061
ILE 530.0040
GLY 540.0038
ARG 550.0041
CYS 560.0046
PRO 570.0051
ASN 580.0068
THR 590.0055
TYR 600.0084
ALA 610.0064
CYS 620.0058
CYS 630.0061
LEU 640.0055
ARG 650.0060
LYS 660.0107
TRP 670.0117
ASP 680.0090
GLU 690.0085
SER 700.0071
LEU 710.0101
LEU 720.0104
ASN 730.0074
ARG 740.0082
THR 750.0104
LYS 760.0101
PRO 770.0094
GLU 780.0070
ALA 790.0073
ALA 800.0090
ALA 810.0158
LYS 820.0107
LYS 830.0095
GLU 840.0068
MET 850.0088
ASN 860.0149
LEU 870.0154
SER 880.0152
VAL 890.0155
GLY 900.0160
LEU 910.0097
GLY 920.0135
GLY 930.0178
GLY 940.0164
SER 950.0096
ASN 960.0127
LEU 970.0117
SER 980.0115
VAL 990.0130
GLY 1000.0128
LEU 1010.0124
GLY 1020.0111
GLU 1030.0159
ILE 1040.0240
GLY 1050.0306
GLY 1060.0061
GLY 1070.0123
SER 1080.0184
LYS 1090.0212
LEU 1100.0281
LEU 1110.0229
ASP 1120.0216
ILE 1130.0171
ASN 1140.0170
LEU 1150.0141
GLY 1160.0063
ARG 1170.0289
GLY 1180.0246
GLY 1190.0214
GLY 1200.0045
SER 1210.0070
MET 1220.0065
VAL 1230.0112
ASP 1240.0122
LEU 1250.0158
THR 1260.0155
PHE 1270.0100
GLY 1280.0089
GLY 1290.0062
VAL 1300.0057
GLY 1310.0147
GLY 1320.0135
GLY 1330.0147
SER 1340.0125
THR 1350.0160
PHE 1360.0120
THR 1370.0133
PHE 1380.0123
PHE 1390.0142
PRO 1400.0131
LEU 1410.0154
VAL 1420.0179
ILE 1430.0170
GLY 1440.0200
GLY 1450.0213
GLY 1460.0184
SER 1470.0180
ASP 1480.0148
ALA 1490.0133
MET 1500.0102
TYR 1510.0153
LEU 1520.0147
GLY 1530.0158
PHE 1540.0152
ALA 1550.0163
ALA 1560.0206
GLY 1570.0272
GLY 1580.0280
GLY 1590.0330
SER 1600.0327
ALA 1610.0078
GLY 1620.0046
GLY 1630.0086
GLU 1640.0143
ASN 1650.0183
HIS 1660.0120
VAL 1670.0096
ALA 1680.0039
PHE 1690.0039
GLY 1700.0064
PRO 1710.0403
GLY 1720.0372
PRO 1730.0381
GLY 1740.0242
VAL 1750.0175
ASP 1760.0059
LEU 1770.0095
THR 1780.0137
PHE 1790.0232
GLY 1800.0308
GLY 1810.0410
VAL 1820.0335
GLN 1830.0166
PHE 1840.0208
ALA 1850.0212
MET 1860.0398
VAL 1870.0450
ASN 1880.0316
ASN 1890.0208
GLY 1900.0351
PRO 1910.0495
GLY 1920.0255
PRO 1930.0330
GLY 1940.0279
GLU 1950.0067
SER 1960.0322
PHE 1970.0283
THR 1980.0223
ALA 1990.0172
GLN 2000.0202
PRO 2010.0062
ALA 2020.0126
ASP 2030.0187
MET 2040.0142
GLN 2050.0277
ALA 2060.0393
GLY 2070.0268
ILE 2080.0391
LYS 2090.0268
GLY 2100.0510
PRO 2110.0315
GLY 2120.0079
PRO 2130.0247
GLY 2140.0177
GLY 2150.0283
SER 2160.0282
ILE 2170.0104
GLN 2180.0109
VAL 2190.0207
ILE 2200.0239
ASN 2210.0248
GLY 2220.0208
SER 2230.0196
THR 2240.0286
ILE 2250.0329
GLY 2260.0245
THR 2270.0335
GLY 2280.0347
SER 2290.0369
LYS 2300.0111
LYS 2310.0222
THR 2320.0257
ILE 2330.0254
LEU 2340.0239
ILE 2350.0327
TYR 2360.0246
SER 2370.0265
ILE 2380.0245
ILE 2390.0175
GLY 2400.0206
VAL 2410.0254
LYS 2420.0189
LYS 2430.0172
GLY 2440.0194
THR 2450.0207
LEU 2460.0316
ALA 2470.0216
TRP 2480.0167
ALA 2490.0153
ARG 2500.0192
THR 2510.0325
GLY 2520.0268
PHE 2530.0215
SER 2540.0128
PRO 2550.0167
ALA 2560.0191
LYS 2570.0136
LYS 2580.0121
LEU 2590.0217
ASN 2600.0217
ALA 2610.0323
GLY 2620.0348
VAL 2630.0094
VAL 2640.0382
ARG 2650.0229
VAL 2660.0201
PHE 2670.0208
PHE 2680.0158
LEU 2690.0225
ASN 2700.0255
GLN 2710.0150
LYS 2720.0133
LYS 2730.0223
ALA 2740.0213
LYS 2750.0151
ASP 2760.0210
VAL 2770.0211
LEU 2780.0154
ARG 2790.0132
LYS 2800.0185
THR 2810.0183
SER 2820.0094
ARG 2830.0085
PRO 2840.0053
MET 2850.0109
VAL 2860.0148
ASP 2870.0123
LEU 2880.0151
THR 2890.0149
PHE 2900.0109
GLY 2910.0196
GLY 2920.0265

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.