CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0740
GLU 270.0167
PRO 280.0161
CYS 290.0148
VAL 300.0148
GLU 310.0151
VAL 320.0139
VAL 330.0142
PRO 340.0157
ASN 350.0154
ILE 360.0136
THR 370.0127
TYR 380.0130
GLN 390.0125
CYS 400.0126
MET 410.0118
GLU 420.0123
LEU 430.0135
ASN 440.0128
PHE 450.0125
TYR 460.0118
LYS 470.0119
ILE 480.0119
PRO 490.0136
ASP 500.0148
ASN 510.0160
LEU 520.0152
PRO 530.0157
PHE 540.0151
SER 550.0146
THR 560.0133
LYS 570.0118
ASN 580.0108
LEU 590.0110
ASP 600.0103
LEU 610.0104
SER 620.0096
PHE 630.0100
ASN 640.0107
PRO 650.0101
LEU 660.0096
ARG 670.0082
HIS 680.0081
LEU 690.0084
GLY 700.0093
SER 710.0100
TYR 720.0112
SER 730.0108
PHE 740.0112
PHE 750.0127
SER 760.0137
PHE 770.0129
PRO 780.0131
GLU 790.0127
LEU 800.0112
GLN 810.0098
VAL 820.0088
LEU 830.0087
ASP 840.0081
LEU 850.0079
SER 860.0073
ARG 870.0077
CYS 880.0083
GLU 890.0076
ILE 900.0067
GLN 910.0056
THR 920.0058
ILE 930.0064
GLU 940.0073
ASP 950.0080
GLY 960.0092
ALA 970.0089
TYR 980.0091
GLN 990.0103
SER 1000.0116
LEU 1010.0105
SER 1020.0108
HIS 1030.0106
LEU 1040.0091
SER 1050.0079
THR 1060.0068
LEU 1070.0065
ILE 1080.0059
LEU 1090.0054
THR 1100.0052
GLY 1110.0057
ASN 1120.0056
PRO 1130.0049
ILE 1140.0040
GLN 1150.0034
SER 1160.0038
LEU 1170.0042
ALA 1180.0054
LEU 1190.0061
GLY 1200.0074
ALA 1210.0066
PHE 1220.0068
SER 1230.0084
GLY 1240.0097
LEU 1250.0086
SER 1260.0094
SER 1270.0088
LEU 1280.0072
GLN 1290.0061
LYS 1300.0049
LEU 1310.0044
VAL 1320.0038
ALA 1330.0031
VAL 1340.0032
GLU 1350.0038
THR 1360.0033
ASN 1370.0027
LEU 1380.0013
ALA 1390.0015
SER 1400.0020
LEU 1410.0025
GLU 1420.0037
ASN 1430.0030
PHE 1440.0031
PRO 1450.0048
ILE 1460.0051
GLY 1470.0062
HIS 1480.0075
LEU 1490.0069
LYS 1500.0075
THR 1510.0073
LEU 1520.0056
LYS 1530.0047
GLU 1540.0033
LEU 1550.0026
ASN 1560.0019
VAL 1570.0013
ALA 1580.0021
HIS 1590.0033
ASN 1600.0025
LEU 1610.0028
ILE 1620.0024
GLN 1630.0039
SER 1640.0044
PHE 1650.0044
LYS 1660.0050
LEU 1670.0047
PRO 1680.0052
GLU 1690.0067
TYR 1700.0061
PHE 1710.0056
SER 1720.0072
ASN 1730.0074
LEU 1740.0062
THR 1750.0070
ASN 1760.0062
LEU 1770.0046
GLU 1780.0037
HIS 1790.0023
LEU 1800.0019
ASP 1810.0011
LEU 1820.0018
SER 1830.0027
SER 1840.0038
ASN 1850.0034
LYS 1860.0044
ILE 1870.0046
GLN 1880.0061
SER 1890.0066
ILE 1900.0064
TYR 1910.0075
CYS 1920.0082
THR 1930.0079
ASP 1940.0063
LEU 1950.0065
ARG 1960.0076
VAL 1970.0069
LEU 1980.0066
HIS 1990.0081
GLN 2000.0085
MET 2010.0078
PRO 2020.0080
LEU 2030.0075
LEU 2040.0061
ASN 2050.0049
LEU 2060.0038
SER 2070.0025
LEU 2080.0026
ASP 2090.0022
LEU 2100.0034
SER 2110.0039
LEU 2120.0048
ASN 2130.0048
PRO 2140.0062
MET 2150.0065
ASN 2160.0078
PHE 2170.0080
ILE 2180.0075
GLN 2190.0086
PRO 2200.0094
GLY 2210.0093
ALA 2220.0079
PHE 2230.0073
LYS 2240.0086
GLU 2250.0085
ILE 2260.0071
ARG 2270.0062
LEU 2280.0048
HIS 2290.0038
LYS 2300.0030
LEU 2310.0036
THR 2320.0034
LEU 2330.0046
ARG 2340.0048
ASN 2350.0059
ASN 2360.0060
PHE 2370.0072
ASP 2380.0083
SER 2390.0092
LEU 2400.0093
ASN 2410.0099
VAL 2420.0089
MET 2430.0081
LYS 2440.0090
THR 2450.0091
CYS 2460.0078
ILE 2470.0077
GLN 2480.0089
GLY 2490.0082
LEU 2500.0073
ALA 2510.0084
GLY 2520.0084
LEU 2530.0070
GLU 2540.0064
VAL 2550.0051
HIS 2560.0042
ARG 2570.0035
LEU 2580.0042
VAL 2590.0040
LEU 2600.0051
GLY 2610.0057
GLU 2620.0060
PHE 2630.0060
ARG 2640.0071
ASN 2650.0073
GLU 2660.0071
GLY 2670.0080
ASN 2680.0081
LEU 2690.0086
GLU 2700.0099
LYS 2710.0100
PHE 2720.0091
ASP 2730.0098
LYS 2740.0097
SER 2750.0098
ALA 2760.0088
LEU 2770.0081
GLU 2780.0091
GLY 2790.0086
LEU 2800.0076
CYS 2810.0084
ASN 2820.0087
LEU 2830.0074
THR 2840.0068
ILE 2850.0057
GLU 2860.0049
GLU 2870.0040
PHE 2880.0045
ARG 2890.0042
LEU 2900.0052
ALA 2910.0049
TYR 2920.0059
LEU 2930.0070
ASP 2940.0080
TYR 2950.0088
TYR 2960.0091
LEU 2970.0087
ASP 2980.0095
GLY 2990.0089
ILE 3000.0082
ILE 3010.0090
ASP 3020.0091
LEU 3030.0084
PHE 3040.0074
ASN 3050.0081
CYS 3060.0078
LEU 3070.0066
THR 3080.0068
ASN 3090.0064
VAL 3100.0054
SER 3110.0045
SER 3120.0038
PHE 3130.0044
SER 3140.0042
LEU 3150.0050
VAL 3160.0049
SER 3170.0059
VAL 3180.0066
THR 3190.0076
ILE 3200.0078
GLU 3210.0086
ARG 3220.0086
VAL 3230.0076
LYS 3240.0079
ASP 3250.0079
PHE 3260.0067
SER 3270.0071
TYR 3280.0074
ASN 3290.0067
PHE 3300.0063
GLY 3310.0058
TRP 3320.0049
GLN 3330.0040
HIS 3340.0034
LEU 3350.0040
GLU 3360.0038
LEU 3370.0047
VAL 3380.0047
ASN 3390.0055
CYS 3400.0061
LYS 3410.0071
PHE 3420.0072
GLY 3430.0081
GLN 3440.0075
PHE 3450.0065
PRO 3460.0063
THR 3470.0064
LEU 3480.0057
LYS 3490.0057
LEU 3500.0053
LYS 3510.0050
SER 3520.0047
LEU 3530.0041
LYS 3540.0031
ARG 3550.0028
LEU 3560.0035
THR 3570.0036
PHE 3580.0044
THR 3590.0044
SER 3600.0051
ASN 3610.0057
LYS 3620.0066
GLY 3630.0072
GLY 3640.0072
ASN 3650.0063
ALA 3660.0063
PHE 3670.0057
SER 3680.0059
GLU 3690.0054
VAL 3700.0050
ASP 3710.0047
LEU 3720.0043
PRO 3730.0040
SER 3740.0035
LEU 3750.0032
GLU 3760.0025
PHE 3770.0026
LEU 3780.0032
ASP 3790.0035
LEU 3800.0042
SER 3810.0043
ARG 3820.0049
ASN 3830.0052
GLY 3840.0055
LEU 3850.0054
SER 3860.0056
PHE 3870.0051
LYS 3880.0053
GLY 3890.0050
CYS 3900.0046
CYS 3910.0042
SER 3920.0041
GLN 3930.0037
SER 3940.0043
ASP 3950.0045
PHE 3960.0041
GLY 3970.0043
THR 3980.0036
ILE 3990.0032
SER 4000.0028
LEU 4010.0029
LYS 4020.0027
TYR 4030.0029
LEU 4040.0033
ASP 4050.0036
LEU 4060.0042
SER 4070.0043
PHE 4080.0047
ASN 4090.0049
GLY 4100.0052
VAL 4110.0052
ILE 4120.0049
THR 4130.0051
MET 4140.0047
SER 4150.0048
SER 4160.0043
ASN 4170.0041
PHE 4180.0037
LEU 4190.0036
GLY 4200.0033
LEU 4210.0032
GLU 4220.0032
GLN 4230.0030
LEU 4240.0031
GLU 4250.0031
HIS 4260.0032
LEU 4270.0036
ASP 4280.0038
PHE 4290.0041
GLN 4300.0042
HIS 4310.0046
SER 4320.0046
ASN 4330.0049
LEU 4340.0048
LYS 4350.0051
GLN 4360.0051
MET 4370.0048
SER 4380.0052
GLU 4390.0052
PHE 4400.0049
SER 4410.0045
VAL 4420.0044
PHE 4430.0041
LEU 4440.0041
SER 4450.0038
LEU 4460.0036
ARG 4470.0037
ASN 4480.0035
LEU 4490.0035
ILE 4500.0035
TYR 4510.0035
LEU 4520.0038
ASP 4530.0039
ILE 4540.0041
SER 4550.0042
HIS 4560.0045
THR 4570.0046
HIS 4580.0049
THR 4590.0048
ARG 4600.0051
VAL 4610.0050
ALA 4620.0054
PHE 4630.0053
ASN 4640.0052
GLY 4650.0050
ILE 4660.0047
PHE 4670.0045
ASN 4680.0046
GLY 4690.0043
LEU 4700.0042
SER 4710.0043
SER 4720.0041
LEU 4730.0040
GLU 4740.0040
VAL 4750.0039
LEU 4760.0040
LYS 4770.0041
MET 4780.0042
ALA 4790.0043
GLY 4800.0045
ASN 4810.0046
SER 4820.0049
PHE 4830.0051
GLN 4840.0054
GLU 4850.0057
ASN 4860.0054
PHE 4870.0054
LEU 4880.0051
PRO 4890.0053
ASP 4900.0053
ILE 4910.0050
PHE 4920.0048
THR 4930.0052
GLU 4940.0050
LEU 4950.0047
ARG 4960.0049
ASN 4970.0046
LEU 4980.0044
THR 4990.0044
PHE 5000.0042
LEU 5010.0042
ASP 5020.0042
LEU 5030.0043
SER 5040.0043
GLN 5050.0045
CYS 5060.0046
GLN 5070.0048
LEU 5080.0049
GLU 5090.0052
GLN 5100.0053
LEU 5110.0053
SER 5120.0055
PRO 5130.0057
THR 5140.0057
ALA 5150.0052
PHE 5160.0051
ASN 5170.0055
SER 5180.0054
LEU 5190.0050
SER 5200.0053
SER 5210.0050
LEU 5220.0047
GLN 5230.0046
VAL 5240.0044
LEU 5250.0044
ASN 5260.0042
MET 5270.0044
SER 5280.0043
HIS 5290.0044
ASN 5300.0046
ASN 5310.0048
PHE 5320.0048
PHE 5330.0050
SER 5340.0050
LEU 5350.0049
ASP 5360.0052
THR 5370.0052
PHE 5380.0056
PRO 5390.0054
TYR 5400.0052
LYS 5410.0056
CYS 5420.0056
LEU 5430.0052
ASN 5440.0055
SER 5450.0052
LEU 5460.0048
GLN 5470.0048
VAL 5480.0045
LEU 5490.0044
ASP 5500.0043
TYR 5510.0043
SER 5520.0042
LEU 5530.0043
ASN 5540.0044
HIS 5550.0046
ILE 5560.0046
MET 5570.0047
THR 5580.0049
SER 5590.0051
LYS 5600.0055
LYS 5610.0056
GLN 5620.0056
GLU 5630.0057
LEU 5640.0053
GLN 5650.0055
HIS 5660.0056
PHE 5670.0052
PRO 5680.0053
SER 5690.0054
SER 5700.0053
LEU 5710.0049
ALA 5720.0048
PHE 5730.0045
LEU 5740.0044
ASN 5750.0043
LEU 5760.0043
THR 5770.0042
GLN 5780.0043
ASN 5790.0044
ASP 5800.0045
PHE 5810.0045
ALA 5820.0047
CYS 5830.0045
THR 5840.0048
CYS 5850.0049
GLU 5860.0052
HIS 5870.0049
GLN 5880.0048
SER 5890.0050
PHE 5900.0048
LEU 5910.0045
GLN 5920.0046
TRP 5930.0047
ILE 5940.0045
LYS 5950.0045
ASP 5960.0048
GLN 5970.0047
ARG 5980.0045
GLN 5990.0047
LEU 6000.0046
LEU 6010.0044
VAL 6020.0044
GLU 6030.0044
VAL 6040.0043
GLU 6050.0044
ARG 6060.0044
MET 6070.0042
GLU 6080.0043
CYS 6090.0043
ALA 6100.0045
THR 6110.0047
PRO 6120.0047
SER 6130.0048
ASP 6140.0046
LYS 6150.0043
GLN 6160.0044
GLY 6170.0045
MET 6180.0043
PRO 6190.0042
VAL 6200.0042
LEU 6210.0043
SER 6220.0042
LEU 6230.0042
ASN 6240.0043
ILE 6250.0044
THR 6260.0045
CYS 6270.0048
GLU 10.0107
ALA 20.0099
ALA 30.0106
ALA 40.0100
LYS 50.0085
MET 60.0085
GLN 70.0089
ARG 80.0078
LEU 90.0067
VAL 100.0073
LEU 110.0071
LEU 120.0057
LEU 130.0055
ALA 140.0061
ILE 150.0053
SER 160.0042
LEU 170.0048
LEU 180.0050
LEU 190.0039
TYR 200.0037
GLN 210.0045
ASP 220.0041
LEU 230.0032
PRO 240.0034
VAL 250.0038
ARG 260.0043
SER 270.0038
GLU 280.0037
PHE 290.0042
GLU 300.0034
LEU 310.0024
ASP 320.0025
ARG 330.0023
ILE 340.0013
CYS 350.0015
GLY 360.0020
TYR 370.0022
GLY 380.0018
THR 390.0021
ALA 400.0017
ARG 410.0019
CYS 420.0029
ARG 430.0042
LYS 440.0057
LYS 450.0060
CYS 460.0053
ARG 470.0050
SER 480.0057
GLN 490.0046
GLU 500.0045
TYR 510.0054
ARG 520.0053
ILE 530.0049
GLY 540.0047
ARG 550.0043
CYS 560.0033
PRO 570.0033
ASN 580.0043
THR 590.0050
TYR 600.0048
ALA 610.0047
CYS 620.0036
CYS 630.0036
LEU 640.0033
ARG 650.0033
LYS 660.0048
TRP 670.0049
ASP 680.0044
GLU 690.0056
SER 700.0046
LEU 710.0051
LEU 720.0067
ASN 730.0064
ARG 740.0059
THR 750.0076
LYS 760.0086
PRO 770.0093
GLU 780.0086
ALA 790.0102
ALA 800.0111
ALA 810.0104
LYS 820.0098
LYS 830.0080
GLU 840.0052
MET 850.0048
ASN 860.0032
LEU 870.0046
SER 880.0077
VAL 890.0101
GLY 900.0137
LEU 910.0162
GLY 920.0200
GLY 930.0218
GLY 940.0189
SER 950.0165
ASN 960.0125
LEU 970.0105
SER 980.0070
VAL 990.0051
GLY 1000.0041
LEU 1010.0050
GLY 1020.0082
GLU 1030.0102
ILE 1040.0123
GLY 1050.0146
GLY 1060.0150
GLY 1070.0122
SER 1080.0090
LYS 1090.0068
LEU 1100.0050
LEU 1110.0037
ASP 1120.0068
ILE 1130.0086
ASN 1140.0122
LEU 1150.0143
GLY 1160.0181
ARG 1170.0213
GLY 1180.0226
GLY 1190.0231
GLY 1200.0229
SER 1210.0193
MET 1220.0181
VAL 1230.0142
ASP 1240.0138
LEU 1250.0106
THR 1260.0109
PHE 1270.0101
GLY 1280.0109
GLY 1290.0143
VAL 1300.0148
GLY 1310.0189
GLY 1320.0189
GLY 1330.0196
SER 1340.0162
THR 1350.0162
PHE 1360.0127
THR 1370.0126
PHE 1380.0113
PHE 1390.0109
PRO 1400.0116
LEU 1410.0095
VAL 1420.0117
ILE 1430.0114
GLY 1440.0132
GLY 1450.0156
GLY 1460.0165
SER 1470.0147
ASP 1480.0146
ALA 1490.0109
MET 1500.0094
TYR 1510.0058
LEU 1520.0054
GLY 1530.0053
PHE 1540.0076
ALA 1550.0101
ALA 1560.0131
GLY 1570.0163
GLY 1580.0200
GLY 1590.0220
SER 1600.0237
ALA 1610.0228
GLY 1620.0220
GLY 1630.0205
GLU 1640.0174
ASN 1650.0164
HIS 1660.0157
VAL 1670.0152
ALA 1680.0175
PHE 1690.0176
GLY 1700.0215
PRO 1710.0240
GLY 1720.0254
PRO 1730.0241
GLY 1740.0228
VAL 1750.0196
ASP 1760.0207
LEU 1770.0190
THR 1780.0206
PHE 1790.0207
GLY 1800.0232
GLY 1810.0254
VAL 1820.0258
GLN 1830.0249
PHE 1840.0235
ALA 1850.0246
MET 1860.0227
VAL 1870.0254
ASN 1880.0249
ASN 1890.0252
GLY 1900.0258
PRO 1910.0294
GLY 1920.0292
PRO 1930.0313
GLY 1940.0368
GLU 1950.0383
SER 1960.0422
PHE 1970.0443
THR 1980.0453
ALA 1990.0479
GLN 2000.0493
PRO 2010.0531
ALA 2020.0544
ASP 2030.0538
MET 2040.0566
GLN 2050.0596
ALA 2060.0615
GLY 2070.0683
ILE 2080.0608
LYS 2090.0661
GLY 2100.0657
PRO 2110.0597
GLY 2120.0740
PRO 2130.0732
GLY 2140.0612
GLY 2150.0469
SER 2160.0292
ILE 2170.0192
GLN 2180.0125
VAL 2190.0029
ILE 2200.0083
ASN 2210.0120
GLY 2220.0109
SER 2230.0120
THR 2240.0124
ILE 2250.0117
GLY 2260.0140
THR 2270.0160
GLY 2280.0152
SER 2290.0150
LYS 2300.0113
LYS 2310.0094
THR 2320.0069
ILE 2330.0068
LEU 2340.0051
ILE 2350.0049
TYR 2360.0049
SER 2370.0049
ILE 2380.0048
ILE 2390.0048
GLY 2400.0048
VAL 2410.0051
LYS 2420.0049
LYS 2430.0050
GLY 2440.0053
THR 2450.0052
LEU 2460.0047
ALA 2470.0044
TRP 2480.0048
ALA 2490.0045
ARG 2500.0050
THR 2510.0046
GLY 2520.0047
PHE 2530.0048
SER 2540.0048
PRO 2550.0058
ALA 2560.0057
LYS 2570.0067
LYS 2580.0104
LEU 2590.0123
ASN 2600.0162
ALA 2610.0179
GLY 2620.0142
VAL 2630.0125
VAL 2640.0095
ARG 2650.0071
VAL 2660.0051
PHE 2670.0051
PHE 2680.0052
LEU 2690.0053
ASN 2700.0052
GLN 2710.0047
LYS 2720.0048
LYS 2730.0051
ALA 2740.0048
LYS 2750.0047
ASP 2760.0052
VAL 2770.0055
LEU 2780.0049
ARG 2790.0049
LYS 2800.0057
THR 2810.0064
SER 2820.0061
ARG 2830.0096
PRO 2840.0121
MET 2850.0149
VAL 2860.0207
ASP 2870.0274
LEU 2880.0292
THR 2890.0371
PHE 2900.0423
GLY 2910.0516
GLY 2920.0552

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.