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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 90  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0835
GLU 270.0062
PRO 280.0075
CYS 290.0053
VAL 300.0056
GLU 310.0043
VAL 320.0072
VAL 330.0079
PRO 340.0064
ASN 350.0069
ILE 360.0075
THR 370.0055
TYR 380.0037
GLN 390.0056
CYS 400.0057
MET 410.0084
GLU 420.0100
LEU 430.0093
ASN 440.0095
PHE 450.0074
TYR 460.0076
LYS 470.0074
ILE 480.0047
PRO 490.0049
ASP 500.0058
ASN 510.0060
LEU 520.0043
PRO 530.0055
PHE 540.0064
SER 550.0067
THR 560.0045
LYS 570.0045
ASN 580.0042
LEU 590.0031
ASP 600.0044
LEU 610.0047
SER 620.0061
PHE 630.0068
ASN 640.0062
PRO 650.0061
LEU 660.0050
ARG 670.0042
HIS 680.0040
LEU 690.0036
GLY 700.0034
SER 710.0031
TYR 720.0031
SER 730.0037
PHE 740.0020
PHE 750.0019
SER 760.0030
PHE 770.0028
PRO 780.0029
GLU 790.0033
LEU 800.0024
GLN 810.0031
VAL 820.0021
LEU 830.0023
ASP 840.0030
LEU 850.0035
SER 860.0042
ARG 870.0040
CYS 880.0039
GLU 890.0039
ILE 900.0041
GLN 910.0044
THR 920.0045
ILE 930.0042
GLU 940.0043
ASP 950.0044
GLY 960.0040
ALA 970.0037
TYR 980.0031
GLN 990.0031
SER 1000.0023
LEU 1010.0023
SER 1020.0027
HIS 1030.0020
LEU 1040.0020
SER 1050.0024
THR 1060.0020
LEU 1070.0022
ILE 1080.0019
LEU 1090.0022
THR 1100.0020
GLY 1110.0024
ASN 1120.0032
PRO 1130.0038
ILE 1140.0039
GLN 1150.0047
SER 1160.0050
LEU 1170.0049
ALA 1180.0054
LEU 1190.0053
GLY 1200.0053
ALA 1210.0046
PHE 1220.0040
SER 1230.0048
GLY 1240.0046
LEU 1250.0037
SER 1260.0043
SER 1270.0039
LEU 1280.0030
GLN 1290.0027
LYS 1300.0017
LEU 1310.0012
VAL 1320.0011
ALA 1330.0007
VAL 1340.0008
GLU 1350.0015
THR 1360.0016
ASN 1370.0021
LEU 1380.0022
ALA 1390.0032
SER 1400.0032
LEU 1410.0027
GLU 1420.0034
ASN 1430.0041
PHE 1440.0032
PRO 1450.0036
ILE 1460.0028
GLY 1470.0041
HIS 1480.0049
LEU 1490.0038
LYS 1500.0040
THR 1510.0040
LEU 1520.0023
LYS 1530.0023
GLU 1540.0016
LEU 1550.0007
ASN 1560.0007
VAL 1570.0010
ALA 1580.0017
HIS 1590.0022
ASN 1600.0024
LEU 1610.0033
ILE 1620.0043
GLN 1630.0046
SER 1640.0047
PHE 1650.0045
LYS 1660.0048
LEU 1670.0039
PRO 1680.0040
GLU 1690.0030
TYR 1700.0030
PHE 1710.0017
SER 1720.0017
ASN 1730.0026
LEU 1740.0018
THR 1750.0019
ASN 1760.0023
LEU 1770.0012
GLU 1780.0015
HIS 1790.0013
LEU 1800.0011
ASP 1810.0014
LEU 1820.0021
SER 1830.0020
SER 1840.0025
ASN 1850.0032
LYS 1860.0041
ILE 1870.0054
GLN 1880.0056
SER 1890.0060
ILE 1900.0061
TYR 1910.0071
CYS 1920.0072
THR 1930.0071
ASP 1940.0063
LEU 1950.0056
ARG 1960.0058
VAL 1970.0042
LEU 1980.0039
HIS 1990.0049
GLN 2000.0038
MET 2010.0029
PRO 2020.0035
LEU 2030.0029
LEU 2040.0021
ASN 2050.0016
LEU 2060.0013
SER 2070.0011
LEU 2080.0015
ASP 2090.0015
LEU 2100.0022
SER 2110.0019
LEU 2120.0031
ASN 2130.0039
PRO 2140.0043
MET 2150.0042
ASN 2160.0047
PHE 2170.0058
ILE 2180.0058
GLN 2190.0068
PRO 2200.0068
GLY 2210.0074
ALA 2220.0070
PHE 2230.0058
LYS 2240.0067
GLU 2250.0065
ILE 2260.0052
ARG 2270.0029
LEU 2280.0019
HIS 2290.0010
LYS 2300.0005
LEU 2310.0011
THR 2320.0013
LEU 2330.0017
ARG 2340.0016
ASN 2350.0021
ASN 2360.0027
PHE 2370.0023
ASP 2380.0024
SER 2390.0020
LEU 2400.0025
ASN 2410.0026
VAL 2420.0027
MET 2430.0027
LYS 2440.0035
THR 2450.0040
CYS 2460.0042
ILE 2470.0031
GLN 2480.0042
GLY 2490.0048
LEU 2500.0045
ALA 2510.0054
GLY 2520.0055
LEU 2530.0040
GLU 2540.0033
VAL 2550.0016
HIS 2560.0012
ARG 2570.0012
LEU 2580.0010
VAL 2590.0013
LEU 2600.0013
GLY 2610.0015
GLU 2620.0019
PHE 2630.0025
ARG 2640.0032
ASN 2650.0038
GLU 2660.0031
GLY 2670.0029
ASN 2680.0024
LEU 2690.0022
GLU 2700.0028
LYS 2710.0034
PHE 2720.0034
ASP 2730.0041
LYS 2740.0045
SER 2750.0044
ALA 2760.0036
LEU 2770.0031
GLU 2780.0038
GLY 2790.0034
LEU 2800.0035
CYS 2810.0045
ASN 2820.0048
LEU 2830.0036
THR 2840.0030
ILE 2850.0018
GLU 2860.0021
GLU 2870.0023
PHE 2880.0022
ARG 2890.0023
LEU 2900.0022
ALA 2910.0024
TYR 2920.0023
LEU 2930.0025
ASP 2940.0027
TYR 2950.0030
TYR 2960.0033
LEU 2970.0033
ASP 2980.0036
GLY 2990.0033
ILE 3000.0033
ILE 3010.0038
ASP 3020.0041
LEU 3030.0036
PHE 3040.0033
ASN 3050.0038
CYS 3060.0037
LEU 3070.0032
THR 3080.0029
ASN 3090.0035
VAL 3100.0033
SER 3110.0031
SER 3120.0027
PHE 3130.0025
SER 3140.0023
LEU 3150.0022
VAL 3160.0021
SER 3170.0021
VAL 3180.0024
THR 3190.0023
ILE 3200.0022
GLU 3210.0020
ARG 3220.0010
VAL 3230.0010
LYS 3240.0017
ASP 3250.0024
PHE 3260.0028
SER 3270.0023
TYR 3280.0027
ASN 3290.0035
PHE 3300.0035
GLY 3310.0042
TRP 3320.0034
GLN 3330.0037
HIS 3340.0030
LEU 3350.0022
GLU 3360.0016
LEU 3370.0014
VAL 3380.0011
ASN 3390.0010
CYS 3400.0009
LYS 3410.0009
PHE 3420.0006
GLY 3430.0012
GLN 3440.0022
PHE 3450.0026
PRO 3460.0028
THR 3470.0039
LEU 3480.0039
LYS 3490.0049
LEU 3500.0051
LYS 3510.0061
SER 3520.0054
LEU 3530.0044
LYS 3540.0043
ARG 3550.0033
LEU 3560.0027
THR 3570.0016
PHE 3580.0012
THR 3590.0006
SER 3600.0011
ASN 3610.0010
LYS 3620.0019
GLY 3630.0017
GLY 3640.0024
ASN 3650.0031
ALA 3660.0043
PHE 3670.0053
SER 3680.0060
GLU 3690.0066
VAL 3700.0061
ASP 3710.0069
LEU 3720.0062
PRO 3730.0071
SER 3740.0066
LEU 3750.0055
GLU 3760.0050
PHE 3770.0029
LEU 3780.0026
ASP 3790.0015
LEU 3800.0021
SER 3810.0019
ARG 3820.0023
ASN 3830.0023
GLY 3840.0031
LEU 3850.0033
SER 3860.0042
PHE 3870.0053
LYS 3880.0073
GLY 3890.0077
CYS 3900.0058
CYS 3910.0048
SER 3920.0065
GLN 3930.0069
SER 3940.0082
ASP 3950.0072
PHE 3960.0062
GLY 3970.0075
THR 3980.0066
ILE 3990.0067
SER 4000.0059
LEU 4010.0047
LYS 4020.0024
TYR 4030.0013
LEU 4040.0015
ASP 4050.0012
LEU 4060.0025
SER 4070.0032
PHE 4080.0033
ASN 4090.0032
GLY 4100.0039
VAL 4110.0045
ILE 4120.0049
THR 4130.0062
MET 4140.0056
SER 4150.0065
SER 4160.0054
ASN 4170.0048
PHE 4180.0039
LEU 4190.0048
GLY 4200.0049
LEU 4210.0035
GLU 4220.0026
GLN 4230.0025
LEU 4240.0011
GLU 4250.0011
HIS 4260.0012
LEU 4270.0019
ASP 4280.0026
PHE 4290.0033
GLN 4300.0041
HIS 4310.0046
SER 4320.0035
ASN 4330.0047
LEU 4340.0048
LYS 4350.0059
GLN 4360.0065
MET 4370.0046
SER 4380.0055
GLU 4390.0055
PHE 4400.0042
SER 4410.0031
VAL 4420.0040
PHE 4430.0028
LEU 4440.0026
SER 4450.0016
LEU 4460.0010
ARG 4470.0012
ASN 4480.0014
LEU 4490.0019
ILE 4500.0032
TYR 4510.0035
LEU 4520.0038
ASP 4530.0041
ILE 4540.0042
SER 4550.0047
HIS 4560.0049
THR 4570.0048
HIS 4580.0045
THR 4590.0043
ARG 4600.0039
VAL 4610.0038
ALA 4620.0041
PHE 4630.0040
ASN 4640.0040
GLY 4650.0039
ILE 4660.0040
PHE 4670.0038
ASN 4680.0038
GLY 4690.0034
LEU 4700.0034
SER 4710.0037
SER 4720.0038
LEU 4730.0039
GLU 4740.0040
VAL 4750.0041
LEU 4760.0041
LYS 4770.0039
MET 4780.0038
ALA 4790.0036
GLY 4800.0036
ASN 4810.0037
SER 4820.0030
PHE 4830.0029
GLN 4840.0037
GLU 4850.0035
ASN 4860.0023
PHE 4870.0032
LEU 4880.0024
PRO 4890.0031
ASP 4900.0030
ILE 4910.0040
PHE 4920.0038
THR 4930.0041
GLU 4940.0046
LEU 4950.0042
ARG 4960.0041
ASN 4970.0039
LEU 4980.0035
THR 4990.0031
PHE 5000.0029
LEU 5010.0028
ASP 5020.0021
LEU 5030.0019
SER 5040.0017
GLN 5050.0021
CYS 5060.0026
GLN 5070.0025
LEU 5080.0024
GLU 5090.0032
GLN 5100.0032
LEU 5110.0024
SER 5120.0033
PRO 5130.0026
THR 5140.0020
ALA 5150.0023
PHE 5160.0013
ASN 5170.0016
SER 5180.0023
LEU 5190.0021
SER 5200.0021
SER 5210.0027
LEU 5220.0011
GLN 5230.0013
VAL 5240.0008
LEU 5250.0007
ASN 5260.0010
MET 5270.0016
SER 5280.0017
HIS 5290.0023
ASN 5300.0028
ASN 5310.0037
PHE 5320.0040
PHE 5330.0047
SER 5340.0047
LEU 5350.0043
ASP 5360.0043
THR 5370.0040
PHE 5380.0039
PRO 5390.0029
TYR 5400.0024
LYS 5410.0030
CYS 5420.0013
LEU 5430.0012
ASN 5440.0021
SER 5450.0020
LEU 5460.0014
GLN 5470.0022
VAL 5480.0023
LEU 5490.0026
ASP 5500.0029
TYR 5510.0035
SER 5520.0039
LEU 5530.0040
ASN 5540.0042
HIS 5550.0045
ILE 5560.0046
MET 5570.0041
THR 5580.0046
SER 5590.0049
LYS 5600.0053
LYS 5610.0055
GLN 5620.0056
GLU 5630.0053
LEU 5640.0049
GLN 5650.0050
HIS 5660.0048
PHE 5670.0038
PRO 5680.0029
SER 5690.0039
SER 5700.0029
LEU 5710.0031
ALA 5720.0047
PHE 5730.0048
LEU 5740.0045
ASN 5750.0049
LEU 5760.0047
THR 5770.0056
GLN 5780.0053
ASN 5790.0048
ASP 5800.0042
PHE 5810.0036
ALA 5820.0031
CYS 5830.0017
THR 5840.0040
CYS 5850.0063
GLU 5860.0057
HIS 5870.0017
GLN 5880.0034
SER 5890.0032
PHE 5900.0028
LEU 5910.0037
GLN 5920.0046
TRP 5930.0047
ILE 5940.0056
LYS 5950.0069
ASP 5960.0075
GLN 5970.0057
ARG 5980.0058
GLN 5990.0070
LEU 6000.0068
LEU 6010.0061
VAL 6020.0062
GLU 6030.0059
VAL 6040.0053
GLU 6050.0051
ARG 6060.0053
MET 6070.0061
GLU 6080.0047
CYS 6090.0029
ALA 6100.0043
THR 6110.0045
PRO 6120.0060
SER 6130.0071
ASP 6140.0061
LYS 6150.0037
GLN 6160.0040
GLY 6170.0041
MET 6180.0031
PRO 6190.0051
VAL 6200.0043
LEU 6210.0065
SER 6220.0096
LEU 6230.0066
ASN 6240.0099
ILE 6250.0096
THR 6260.0138
CYS 6270.0202
GLU 10.0107
ALA 20.0061
ALA 30.0056
ALA 40.0089
LYS 50.0066
MET 60.0044
GLN 70.0066
ARG 80.0082
LEU 90.0073
VAL 100.0079
LEU 110.0042
LEU 120.0041
LEU 130.0047
ALA 140.0043
ILE 150.0033
SER 160.0021
LEU 170.0040
LEU 180.0057
LEU 190.0047
TYR 200.0044
GLN 210.0073
ASP 220.0075
LEU 230.0069
PRO 240.0078
VAL 250.0073
ARG 260.0102
SER 270.0072
GLU 280.0083
PHE 290.0073
GLU 300.0045
LEU 310.0032
ASP 320.0028
ARG 330.0025
ILE 340.0016
CYS 350.0007
GLY 360.0011
TYR 370.0019
GLY 380.0025
THR 390.0027
ALA 400.0023
ARG 410.0021
CYS 420.0019
ARG 430.0032
LYS 440.0048
LYS 450.0052
CYS 460.0041
ARG 470.0042
SER 480.0050
GLN 490.0049
GLU 500.0046
TYR 510.0053
ARG 520.0032
ILE 530.0019
GLY 540.0022
ARG 550.0039
CYS 560.0038
PRO 570.0061
ASN 580.0061
THR 590.0072
TYR 600.0055
ALA 610.0027
CYS 620.0022
CYS 630.0028
LEU 640.0033
ARG 650.0042
LYS 660.0062
TRP 670.0058
ASP 680.0045
GLU 690.0038
SER 700.0031
LEU 710.0041
LEU 720.0049
ASN 730.0036
ARG 740.0038
THR 750.0053
LYS 760.0059
PRO 770.0055
GLU 780.0051
ALA 790.0048
ALA 800.0051
ALA 810.0159
LYS 820.0120
LYS 830.0103
GLU 840.0068
MET 850.0057
ASN 860.0093
LEU 870.0101
SER 880.0115
VAL 890.0126
GLY 900.0146
LEU 910.0133
GLY 920.0296
GLY 930.0475
GLY 940.0470
SER 950.0297
ASN 960.0132
LEU 970.0107
SER 980.0103
VAL 990.0102
GLY 1000.0101
LEU 1010.0051
GLY 1020.0137
GLU 1030.0220
ILE 1040.0251
GLY 1050.0318
GLY 1060.0145
GLY 1070.0186
SER 1080.0233
LYS 1090.0223
LEU 1100.0279
LEU 1110.0190
ASP 1120.0184
ILE 1130.0176
ASN 1140.0173
LEU 1150.0166
GLY 1160.0177
ARG 1170.0194
GLY 1180.0133
GLY 1190.0176
GLY 1200.0220
SER 1210.0159
MET 1220.0092
VAL 1230.0087
ASP 1240.0038
LEU 1250.0031
THR 1260.0028
PHE 1270.0029
GLY 1280.0034
GLY 1290.0046
VAL 1300.0061
GLY 1310.0239
GLY 1320.0227
GLY 1330.0196
SER 1340.0143
THR 1350.0102
PHE 1360.0043
THR 1370.0057
PHE 1380.0070
PHE 1390.0088
PRO 1400.0104
LEU 1410.0070
VAL 1420.0036
ILE 1430.0087
GLY 1440.0163
GLY 1450.0238
GLY 1460.0172
SER 1470.0186
ASP 1480.0175
ALA 1490.0133
MET 1500.0082
TYR 1510.0030
LEU 1520.0041
GLY 1530.0036
PHE 1540.0056
ALA 1550.0062
ALA 1560.0100
GLY 1570.0109
GLY 1580.0171
GLY 1590.0197
SER 1600.0215
ALA 1610.0147
GLY 1620.0127
GLY 1630.0098
GLU 1640.0088
ASN 1650.0090
HIS 1660.0115
VAL 1670.0124
ALA 1680.0137
PHE 1690.0140
GLY 1700.0165
PRO 1710.0211
GLY 1720.0218
PRO 1730.0238
GLY 1740.0142
VAL 1750.0231
ASP 1760.0290
LEU 1770.0153
THR 1780.0222
PHE 1790.0219
GLY 1800.0374
GLY 1810.0684
VAL 1820.0510
GLN 1830.0360
PHE 1840.0096
ALA 1850.0259
MET 1860.0531
VAL 1870.0661
ASN 1880.0323
ASN 1890.0361
GLY 1900.0320
PRO 1910.0520
GLY 1920.0436
PRO 1930.0338
GLY 1940.0348
GLU 1950.0168
SER 1960.0567
PHE 1970.0462
THR 1980.0407
ALA 1990.0398
GLN 2000.0293
PRO 2010.0275
ALA 2020.0222
ASP 2030.0326
MET 2040.0467
GLN 2050.0570
ALA 2060.0805
GLY 2070.0601
ILE 2080.0769
LYS 2090.0475
GLY 2100.0835
PRO 2110.0598
GLY 2120.0402
PRO 2130.0324
GLY 2140.0369
GLY 2150.0250
SER 2160.0607
ILE 2170.0429
GLN 2180.0217
VAL 2190.0075
ILE 2200.0235
ASN 2210.0534
GLY 2220.0497
SER 2230.0312
THR 2240.0178
ILE 2250.0199
GLY 2260.0152
THR 2270.0105
GLY 2280.0111
SER 2290.0187
LYS 2300.0181
LYS 2310.0161
THR 2320.0223
ILE 2330.0146
LEU 2340.0189
ILE 2350.0158
TYR 2360.0147
SER 2370.0109
ILE 2380.0089
ILE 2390.0050
GLY 2400.0069
VAL 2410.0013
LYS 2420.0003
LYS 2430.0010
GLY 2440.0029
THR 2450.0031
LEU 2460.0087
ALA 2470.0062
TRP 2480.0080
ALA 2490.0055
ARG 2500.0098
THR 2510.0165
GLY 2520.0126
PHE 2530.0095
SER 2540.0123
PRO 2550.0160
ALA 2560.0280
LYS 2570.0171
LYS 2580.0139
LEU 2590.0144
ASN 2600.0088
ALA 2610.0035
GLY 2620.0112
VAL 2630.0050
VAL 2640.0144
ARG 2650.0096
VAL 2660.0135
PHE 2670.0109
PHE 2680.0118
LEU 2690.0097
ASN 2700.0106
GLN 2710.0064
LYS 2720.0057
LYS 2730.0061
ALA 2740.0062
LYS 2750.0051
ASP 2760.0049
VAL 2770.0051
LEU 2780.0025
ARG 2790.0017
LYS 2800.0046
THR 2810.0056
SER 2820.0040
ARG 2830.0035
PRO 2840.0031
MET 2850.0017
VAL 2860.0012
ASP 2870.0019
LEU 2880.0018
THR 2890.0017
PHE 2900.0009
GLY 2910.0024
GLY 2920.0015

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.