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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 91  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0961
GLU 270.0088
PRO 280.0089
CYS 290.0062
VAL 300.0056
GLU 310.0056
VAL 320.0087
VAL 330.0107
PRO 340.0101
ASN 350.0101
ILE 360.0094
THR 370.0070
TYR 380.0048
GLN 390.0069
CYS 400.0078
MET 410.0111
GLU 420.0134
LEU 430.0124
ASN 440.0129
PHE 450.0103
TYR 460.0107
LYS 470.0114
ILE 480.0081
PRO 490.0075
ASP 500.0085
ASN 510.0084
LEU 520.0067
PRO 530.0076
PHE 540.0075
SER 550.0076
THR 560.0052
LYS 570.0046
ASN 580.0049
LEU 590.0043
ASP 600.0063
LEU 610.0074
SER 620.0091
PHE 630.0103
ASN 640.0094
PRO 650.0094
LEU 660.0078
ARG 670.0060
HIS 680.0051
LEU 690.0048
GLY 700.0039
SER 710.0034
TYR 720.0050
SER 730.0054
PHE 740.0036
PHE 750.0030
SER 760.0032
PHE 770.0036
PRO 780.0030
GLU 790.0024
LEU 800.0021
GLN 810.0031
VAL 820.0037
LEU 830.0043
ASP 840.0051
LEU 850.0059
SER 860.0068
ARG 870.0066
CYS 880.0062
GLU 890.0057
ILE 900.0055
GLN 910.0052
THR 920.0048
ILE 930.0046
GLU 940.0046
ASP 950.0046
GLY 960.0043
ALA 970.0046
TYR 980.0040
GLN 990.0042
SER 1000.0035
LEU 1010.0032
SER 1020.0045
HIS 1030.0037
LEU 1040.0036
SER 1050.0039
THR 1060.0035
LEU 1070.0040
ILE 1080.0038
LEU 1090.0036
THR 1100.0040
GLY 1110.0043
ASN 1120.0048
PRO 1130.0048
ILE 1140.0046
GLN 1150.0049
SER 1160.0048
LEU 1170.0052
ALA 1180.0056
LEU 1190.0050
GLY 1200.0052
ALA 1210.0044
PHE 1220.0037
SER 1230.0051
GLY 1240.0053
LEU 1250.0042
SER 1260.0052
SER 1270.0060
LEU 1280.0046
GLN 1290.0044
LYS 1300.0033
LEU 1310.0021
VAL 1320.0027
ALA 1330.0019
VAL 1340.0032
GLU 1350.0037
THR 1360.0028
ASN 1370.0047
LEU 1380.0048
ALA 1390.0062
SER 1400.0063
LEU 1410.0054
GLU 1420.0058
ASN 1430.0058
PHE 1440.0038
PRO 1450.0036
ILE 1460.0017
GLY 1470.0043
HIS 1480.0051
LEU 1490.0037
LYS 1500.0035
THR 1510.0042
LEU 1520.0033
LYS 1530.0036
GLU 1540.0033
LEU 1550.0022
ASN 1560.0029
VAL 1570.0045
ALA 1580.0055
HIS 1590.0056
ASN 1600.0055
LEU 1610.0067
ILE 1620.0081
GLN 1630.0078
SER 1640.0079
PHE 1650.0081
LYS 1660.0084
LEU 1670.0082
PRO 1680.0080
GLU 1690.0070
TYR 1700.0061
PHE 1710.0054
SER 1720.0050
ASN 1730.0045
LEU 1740.0033
THR 1750.0026
ASN 1760.0029
LEU 1770.0037
GLU 1780.0044
HIS 1790.0046
LEU 1800.0043
ASP 1810.0050
LEU 1820.0063
SER 1830.0065
SER 1840.0066
ASN 1850.0066
LYS 1860.0072
ILE 1870.0077
GLN 1880.0065
SER 1890.0070
ILE 1900.0083
TYR 1910.0090
CYS 1920.0098
THR 1930.0099
ASP 1940.0099
LEU 1950.0101
ARG 1960.0103
VAL 1970.0090
LEU 1980.0087
HIS 1990.0089
GLN 2000.0082
MET 2010.0074
PRO 2020.0072
LEU 2030.0067
LEU 2040.0061
ASN 2050.0051
LEU 2060.0048
SER 2070.0058
LEU 2080.0057
ASP 2090.0057
LEU 2100.0057
SER 2110.0058
LEU 2120.0061
ASN 2130.0063
PRO 2140.0052
MET 2150.0050
ASN 2160.0041
PHE 2170.0056
ILE 2180.0075
GLN 2190.0082
PRO 2200.0093
GLY 2210.0112
ALA 2220.0108
PHE 2230.0107
LYS 2240.0119
GLU 2250.0131
ILE 2260.0124
ARG 2270.0082
LEU 2280.0074
HIS 2290.0070
LYS 2300.0060
LEU 2310.0055
THR 2320.0055
LEU 2330.0047
ARG 2340.0042
ASN 2350.0037
ASN 2360.0039
PHE 2370.0018
ASP 2380.0021
SER 2390.0026
LEU 2400.0042
ASN 2410.0046
VAL 2420.0022
MET 2430.0038
LYS 2440.0061
THR 2450.0056
CYS 2460.0061
ILE 2470.0065
GLN 2480.0079
GLY 2490.0083
LEU 2500.0092
ALA 2510.0107
GLY 2520.0111
LEU 2530.0097
GLU 2540.0089
VAL 2550.0070
HIS 2560.0059
ARG 2570.0052
LEU 2580.0047
VAL 2590.0042
LEU 2600.0035
GLY 2610.0029
GLU 2620.0021
PHE 2630.0041
ARG 2640.0046
ASN 2650.0074
GLU 2660.0068
GLY 2670.0057
ASN 2680.0037
LEU 2690.0034
GLU 2700.0062
LYS 2710.0068
PHE 2720.0051
ASP 2730.0067
LYS 2740.0077
SER 2750.0080
ALA 2760.0064
LEU 2770.0060
GLU 2780.0077
GLY 2790.0077
LEU 2800.0078
CYS 2810.0097
ASN 2820.0099
LEU 2830.0089
THR 2840.0083
ILE 2850.0060
GLU 2860.0052
GLU 2870.0039
PHE 2880.0035
ARG 2890.0033
LEU 2900.0029
ALA 2910.0031
TYR 2920.0021
LEU 2930.0022
ASP 2940.0024
TYR 2950.0038
TYR 2960.0040
LEU 2970.0042
ASP 2980.0045
GLY 2990.0048
ILE 3000.0052
ILE 3010.0059
ASP 3020.0059
LEU 3030.0051
PHE 3040.0051
ASN 3050.0061
CYS 3060.0062
LEU 3070.0044
THR 3080.0039
ASN 3090.0049
VAL 3100.0051
SER 3110.0054
SER 3120.0044
PHE 3130.0038
SER 3140.0035
LEU 3150.0029
VAL 3160.0028
SER 3170.0021
VAL 3180.0027
THR 3190.0026
ILE 3200.0034
GLU 3210.0034
ARG 3220.0027
VAL 3230.0034
LYS 3240.0041
ASP 3250.0047
PHE 3260.0052
SER 3270.0035
TYR 3280.0036
ASN 3290.0041
PHE 3300.0045
GLY 3310.0050
TRP 3320.0047
GLN 3330.0057
HIS 3340.0053
LEU 3350.0041
GLU 3360.0039
LEU 3370.0033
VAL 3380.0031
ASN 3390.0029
CYS 3400.0028
LYS 3410.0027
PHE 3420.0032
GLY 3430.0035
GLN 3440.0039
PHE 3450.0040
PRO 3460.0044
THR 3470.0054
LEU 3480.0055
LYS 3490.0063
LEU 3500.0067
LYS 3510.0077
SER 3520.0070
LEU 3530.0064
LYS 3540.0067
ARG 3550.0060
LEU 3560.0053
THR 3570.0041
PHE 3580.0032
THR 3590.0032
SER 3600.0037
ASN 3610.0033
LYS 3620.0041
GLY 3630.0041
GLY 3640.0045
ASN 3650.0041
ALA 3660.0047
PHE 3670.0054
SER 3680.0065
GLU 3690.0073
VAL 3700.0071
ASP 3710.0084
LEU 3720.0078
PRO 3730.0083
SER 3740.0081
LEU 3750.0072
GLU 3760.0067
PHE 3770.0062
LEU 3780.0048
ASP 3790.0037
LEU 3800.0029
SER 3810.0030
ARG 3820.0044
ASN 3830.0039
GLY 3840.0048
LEU 3850.0041
SER 3860.0050
PHE 3870.0053
LYS 3880.0074
GLY 3890.0079
CYS 3900.0057
CYS 3910.0049
SER 3920.0071
GLN 3930.0080
SER 3940.0092
ASP 3950.0078
PHE 3960.0073
GLY 3970.0087
THR 3980.0080
ILE 3990.0080
SER 4000.0076
LEU 4010.0064
LYS 4020.0053
TYR 4030.0042
LEU 4040.0031
ASP 4050.0025
LEU 4060.0026
SER 4070.0037
PHE 4080.0044
ASN 4090.0041
GLY 4100.0046
VAL 4110.0048
ILE 4120.0046
THR 4130.0060
MET 4140.0055
SER 4150.0067
SER 4160.0059
ASN 4170.0049
PHE 4180.0041
LEU 4190.0055
GLY 4200.0059
LEU 4210.0045
GLU 4220.0036
GLN 4230.0039
LEU 4240.0028
GLU 4250.0031
HIS 4260.0029
LEU 4270.0013
ASP 4280.0020
PHE 4290.0028
GLN 4300.0038
HIS 4310.0047
SER 4320.0031
ASN 4330.0039
LEU 4340.0042
LYS 4350.0053
GLN 4360.0063
MET 4370.0043
SER 4380.0055
GLU 4390.0054
PHE 4400.0043
SER 4410.0033
VAL 4420.0038
PHE 4430.0028
LEU 4440.0033
SER 4450.0022
LEU 4460.0015
ARG 4470.0030
ASN 4480.0023
LEU 4490.0024
ILE 4500.0041
TYR 4510.0037
LEU 4520.0027
ASP 4530.0029
ILE 4540.0031
SER 4550.0034
HIS 4560.0036
THR 4570.0033
HIS 4580.0024
THR 4590.0030
ARG 4600.0031
VAL 4610.0037
ALA 4620.0062
PHE 4630.0063
ASN 4640.0065
GLY 4650.0063
ILE 4660.0053
PHE 4670.0052
ASN 4680.0065
GLY 4690.0062
LEU 4700.0055
SER 4710.0070
SER 4720.0072
LEU 4730.0060
GLU 4740.0064
VAL 4750.0051
LEU 4760.0041
LYS 4770.0024
MET 4780.0019
ALA 4790.0009
GLY 4800.0005
ASN 4810.0015
SER 4820.0032
PHE 4830.0045
GLN 4840.0069
GLU 4850.0080
ASN 4860.0060
PHE 4870.0066
LEU 4880.0047
PRO 4890.0063
ASP 4900.0066
ILE 4910.0068
PHE 4920.0066
THR 4930.0087
GLU 4940.0095
LEU 4950.0078
ARG 4960.0092
ASN 4970.0089
LEU 4980.0068
THR 4990.0067
PHE 5000.0050
LEU 5010.0032
ASP 5020.0017
LEU 5030.0014
SER 5040.0021
GLN 5050.0026
CYS 5060.0026
GLN 5070.0054
LEU 5080.0048
GLU 5090.0063
GLN 5100.0056
LEU 5110.0041
SER 5120.0067
PRO 5130.0054
THR 5140.0057
ALA 5150.0050
PHE 5160.0035
ASN 5170.0055
SER 5180.0070
LEU 5190.0058
SER 5200.0067
SER 5210.0073
LEU 5220.0049
GLN 5230.0055
VAL 5240.0047
LEU 5250.0033
ASN 5260.0039
MET 5270.0046
SER 5280.0055
HIS 5290.0059
ASN 5300.0057
ASN 5310.0065
PHE 5320.0064
PHE 5330.0072
SER 5340.0070
LEU 5350.0065
ASP 5360.0059
THR 5370.0055
PHE 5380.0050
PRO 5390.0041
TYR 5400.0034
LYS 5410.0032
CYS 5420.0027
LEU 5430.0028
ASN 5440.0044
SER 5450.0050
LEU 5460.0044
GLN 5470.0059
VAL 5480.0061
LEU 5490.0057
ASP 5500.0066
TYR 5510.0070
SER 5520.0076
LEU 5530.0076
ASN 5540.0076
HIS 5550.0076
ILE 5560.0076
MET 5570.0065
THR 5580.0064
SER 5590.0063
LYS 5600.0065
LYS 5610.0067
GLN 5620.0068
GLU 5630.0069
LEU 5640.0063
GLN 5650.0067
HIS 5660.0065
PHE 5670.0050
PRO 5680.0038
SER 5690.0051
SER 5700.0050
LEU 5710.0057
ALA 5720.0074
PHE 5730.0075
LEU 5740.0068
ASN 5750.0076
LEU 5760.0074
THR 5770.0073
GLN 5780.0071
ASN 5790.0066
ASP 5800.0060
PHE 5810.0049
ALA 5820.0053
CYS 5830.0035
THR 5840.0091
CYS 5850.0125
GLU 5860.0127
HIS 5870.0052
GLN 5880.0047
SER 5890.0021
PHE 5900.0024
LEU 5910.0032
GLN 5920.0044
TRP 5930.0050
ILE 5940.0063
LYS 5950.0081
ASP 5960.0091
GLN 5970.0071
ARG 5980.0067
GLN 5990.0088
LEU 6000.0087
LEU 6010.0070
VAL 6020.0080
GLU 6030.0063
VAL 6040.0052
GLU 6050.0041
ARG 6060.0045
MET 6070.0064
GLU 6080.0044
CYS 6090.0025
ALA 6100.0040
THR 6110.0051
PRO 6120.0053
SER 6130.0038
ASP 6140.0063
LYS 6150.0048
GLN 6160.0035
GLY 6170.0027
MET 6180.0044
PRO 6190.0059
VAL 6200.0046
LEU 6210.0072
SER 6220.0140
LEU 6230.0100
ASN 6240.0159
ILE 6250.0142
THR 6260.0216
CYS 6270.0311
GLU 10.0123
ALA 20.0094
ALA 30.0072
ALA 40.0102
LYS 50.0112
MET 60.0074
GLN 70.0092
ARG 80.0097
LEU 90.0080
VAL 100.0087
LEU 110.0051
LEU 120.0033
LEU 130.0052
ALA 140.0069
ILE 150.0058
SER 160.0042
LEU 170.0037
LEU 180.0053
LEU 190.0048
TYR 200.0036
GLN 210.0058
ASP 220.0064
LEU 230.0061
PRO 240.0066
VAL 250.0061
ARG 260.0083
SER 270.0069
GLU 280.0075
PHE 290.0072
GLU 300.0057
LEU 310.0064
ASP 320.0064
ARG 330.0064
ILE 340.0069
CYS 350.0073
GLY 360.0065
TYR 370.0086
GLY 380.0094
THR 390.0093
ALA 400.0078
ARG 410.0069
CYS 420.0061
ARG 430.0063
LYS 440.0067
LYS 450.0066
CYS 460.0079
ARG 470.0072
SER 480.0078
GLN 490.0078
GLU 500.0084
TYR 510.0107
ARG 520.0087
ILE 530.0089
GLY 540.0076
ARG 550.0068
CYS 560.0066
PRO 570.0070
ASN 580.0066
THR 590.0072
TYR 600.0075
ALA 610.0067
CYS 620.0073
CYS 630.0074
LEU 640.0082
ARG 650.0082
LYS 660.0119
TRP 670.0115
ASP 680.0088
GLU 690.0081
SER 700.0063
LEU 710.0090
LEU 720.0091
ASN 730.0063
ARG 740.0071
THR 750.0089
LYS 760.0075
PRO 770.0064
GLU 780.0053
ALA 790.0052
ALA 800.0066
ALA 810.0171
LYS 820.0134
LYS 830.0110
GLU 840.0080
MET 850.0063
ASN 860.0090
LEU 870.0091
SER 880.0095
VAL 890.0101
GLY 900.0111
LEU 910.0080
GLY 920.0157
GLY 930.0234
GLY 940.0216
SER 950.0131
ASN 960.0097
LEU 970.0085
SER 980.0082
VAL 990.0087
GLY 1000.0089
LEU 1010.0067
GLY 1020.0137
GLU 1030.0211
ILE 1040.0282
GLY 1050.0350
GLY 1060.0140
GLY 1070.0179
SER 1080.0211
LYS 1090.0197
LEU 1100.0249
LEU 1110.0172
ASP 1120.0152
ILE 1130.0123
ASN 1140.0110
LEU 1150.0083
GLY 1160.0048
ARG 1170.0100
GLY 1180.0054
GLY 1190.0042
GLY 1200.0051
SER 1210.0079
MET 1220.0054
VAL 1230.0065
ASP 1240.0051
LEU 1250.0053
THR 1260.0043
PHE 1270.0024
GLY 1280.0020
GLY 1290.0030
VAL 1300.0046
GLY 1310.0147
GLY 1320.0130
GLY 1330.0098
SER 1340.0082
THR 1350.0058
PHE 1360.0040
THR 1370.0034
PHE 1380.0036
PHE 1390.0032
PRO 1400.0036
LEU 1410.0056
VAL 1420.0056
ILE 1430.0051
GLY 1440.0093
GLY 1450.0096
GLY 1460.0105
SER 1470.0076
ASP 1480.0039
ALA 1490.0030
MET 1500.0042
TYR 1510.0063
LEU 1520.0058
GLY 1530.0045
PHE 1540.0044
ALA 1550.0034
ALA 1560.0072
GLY 1570.0080
GLY 1580.0084
GLY 1590.0078
SER 1600.0070
ALA 1610.0076
GLY 1620.0057
GLY 1630.0037
GLU 1640.0049
ASN 1650.0060
HIS 1660.0042
VAL 1670.0032
ALA 1680.0040
PHE 1690.0043
GLY 1700.0068
PRO 1710.0158
GLY 1720.0121
PRO 1730.0129
GLY 1740.0091
VAL 1750.0087
ASP 1760.0082
LEU 1770.0030
THR 1780.0073
PHE 1790.0104
GLY 1800.0165
GLY 1810.0257
VAL 1820.0177
GLN 1830.0089
PHE 1840.0045
ALA 1850.0116
MET 1860.0249
VAL 1870.0319
ASN 1880.0192
ASN 1890.0140
GLY 1900.0208
PRO 1910.0173
GLY 1920.0179
PRO 1930.0159
GLY 1940.0104
GLU 1950.0021
SER 1960.0064
PHE 1970.0054
THR 1980.0042
ALA 1990.0048
GLN 2000.0027
PRO 2010.0043
ALA 2020.0017
ASP 2030.0039
MET 2040.0068
GLN 2050.0053
ALA 2060.0111
GLY 2070.0085
ILE 2080.0084
LYS 2090.0053
GLY 2100.0064
PRO 2110.0112
GLY 2120.0199
PRO 2130.0139
GLY 2140.0281
GLY 2150.0282
SER 2160.0175
ILE 2170.0185
GLN 2180.0185
VAL 2190.0206
ILE 2200.0193
ASN 2210.0520
GLY 2220.0346
SER 2230.0061
THR 2240.0063
ILE 2250.0309
GLY 2260.0273
THR 2270.0213
GLY 2280.0244
SER 2290.0201
LYS 2300.0139
LYS 2310.0443
THR 2320.0584
ILE 2330.0346
LEU 2340.0380
ILE 2350.0329
TYR 2360.0131
SER 2370.0133
ILE 2380.0084
ILE 2390.0065
GLY 2400.0105
VAL 2410.0110
LYS 2420.0090
LYS 2430.0112
GLY 2440.0115
THR 2450.0087
LEU 2460.0163
ALA 2470.0149
TRP 2480.0181
ALA 2490.0204
ARG 2500.0288
THR 2510.0423
GLY 2520.0387
PHE 2530.0555
SER 2540.0619
PRO 2550.0638
ALA 2560.0470
LYS 2570.0297
LYS 2580.0261
LEU 2590.0433
ASN 2600.0693
ALA 2610.0961
GLY 2620.0449
VAL 2630.0455
VAL 2640.0299
ARG 2650.0462
VAL 2660.0211
PHE 2670.0283
PHE 2680.0109
LEU 2690.0259
ASN 2700.0168
GLN 2710.0141
LYS 2720.0115
LYS 2730.0145
ALA 2740.0154
LYS 2750.0119
ASP 2760.0143
VAL 2770.0161
LEU 2780.0085
ARG 2790.0070
LYS 2800.0155
THR 2810.0217
SER 2820.0142
ARG 2830.0144
PRO 2840.0087
MET 2850.0074
VAL 2860.0092
ASP 2870.0116
LEU 2880.0086
THR 2890.0095
PHE 2900.0056
GLY 2910.0112
GLY 2920.0096

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.