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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 92  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0683
GLU 270.0114
PRO 280.0129
CYS 290.0088
VAL 300.0080
GLU 310.0038
VAL 320.0067
VAL 330.0065
PRO 340.0045
ASN 350.0067
ILE 360.0069
THR 370.0042
TYR 380.0025
GLN 390.0061
CYS 400.0069
MET 410.0101
GLU 420.0125
LEU 430.0120
ASN 440.0124
PHE 450.0096
TYR 460.0098
LYS 470.0089
ILE 480.0056
PRO 490.0073
ASP 500.0090
ASN 510.0103
LEU 520.0066
PRO 530.0074
PHE 540.0087
SER 550.0082
THR 560.0043
LYS 570.0049
ASN 580.0042
LEU 590.0025
ASP 600.0046
LEU 610.0050
SER 620.0063
PHE 630.0076
ASN 640.0066
PRO 650.0069
LEU 660.0051
ARG 670.0050
HIS 680.0054
LEU 690.0050
GLY 700.0055
SER 710.0054
TYR 720.0042
SER 730.0051
PHE 740.0023
PHE 750.0026
SER 760.0050
PHE 770.0033
PRO 780.0039
GLU 790.0044
LEU 800.0025
GLN 810.0039
VAL 820.0031
LEU 830.0031
ASP 840.0035
LEU 850.0041
SER 860.0046
ARG 870.0039
CYS 880.0045
GLU 890.0047
ILE 900.0051
GLN 910.0055
THR 920.0059
ILE 930.0053
GLU 940.0061
ASP 950.0064
GLY 960.0054
ALA 970.0048
TYR 980.0034
GLN 990.0036
SER 1000.0019
LEU 1010.0018
SER 1020.0024
HIS 1030.0021
LEU 1040.0023
SER 1050.0035
THR 1060.0034
LEU 1070.0038
ILE 1080.0031
LEU 1090.0032
THR 1100.0025
GLY 1110.0024
ASN 1120.0033
PRO 1130.0035
ILE 1140.0044
GLN 1150.0051
SER 1160.0062
LEU 1170.0044
ALA 1180.0055
LEU 1190.0060
GLY 1200.0063
ALA 1210.0052
PHE 1220.0046
SER 1230.0054
GLY 1240.0051
LEU 1250.0044
SER 1260.0051
SER 1270.0047
LEU 1280.0041
GLN 1290.0041
LYS 1300.0034
LEU 1310.0029
VAL 1320.0038
ALA 1330.0035
VAL 1340.0029
GLU 1350.0021
THR 1360.0026
ASN 1370.0037
LEU 1380.0036
ALA 1390.0036
SER 1400.0035
LEU 1410.0034
GLU 1420.0035
ASN 1430.0037
PHE 1440.0036
PRO 1450.0039
ILE 1460.0042
GLY 1470.0035
HIS 1480.0041
LEU 1490.0041
LYS 1500.0046
THR 1510.0047
LEU 1520.0038
LYS 1530.0038
GLU 1540.0036
LEU 1550.0035
ASN 1560.0034
VAL 1570.0039
ALA 1580.0041
HIS 1590.0044
ASN 1600.0044
LEU 1610.0048
ILE 1620.0058
GLN 1630.0064
SER 1640.0056
PHE 1650.0040
LYS 1660.0049
LEU 1670.0033
PRO 1680.0036
GLU 1690.0036
TYR 1700.0023
PHE 1710.0023
SER 1720.0027
ASN 1730.0025
LEU 1740.0027
THR 1750.0033
ASN 1760.0037
LEU 1770.0021
GLU 1780.0025
HIS 1790.0026
LEU 1800.0025
ASP 1810.0032
LEU 1820.0034
SER 1830.0044
SER 1840.0060
ASN 1850.0060
LYS 1860.0067
ILE 1870.0059
GLN 1880.0067
SER 1890.0059
ILE 1900.0049
TYR 1910.0068
CYS 1920.0079
THR 1930.0087
ASP 1940.0063
LEU 1950.0055
ARG 1960.0077
VAL 1970.0056
LEU 1980.0054
HIS 1990.0080
GLN 2000.0080
MET 2010.0073
PRO 2020.0076
LEU 2030.0080
LEU 2040.0055
ASN 2050.0054
LEU 2060.0032
SER 2070.0040
LEU 2080.0029
ASP 2090.0039
LEU 2100.0034
SER 2110.0047
LEU 2120.0066
ASN 2130.0056
PRO 2140.0062
MET 2150.0045
ASN 2160.0052
PHE 2170.0050
ILE 2180.0038
GLN 2190.0055
PRO 2200.0058
GLY 2210.0070
ALA 2220.0053
PHE 2230.0043
LYS 2240.0070
GLU 2250.0081
ILE 2260.0059
ARG 2270.0051
LEU 2280.0047
HIS 2290.0063
LYS 2300.0059
LEU 2310.0046
THR 2320.0057
LEU 2330.0049
ARG 2340.0061
ASN 2350.0066
ASN 2360.0056
PHE 2370.0057
ASP 2380.0063
SER 2390.0052
LEU 2400.0044
ASN 2410.0053
VAL 2420.0045
MET 2430.0041
LYS 2440.0038
THR 2450.0041
CYS 2460.0039
ILE 2470.0031
GLN 2480.0029
GLY 2490.0028
LEU 2500.0033
ALA 2510.0044
GLY 2520.0049
LEU 2530.0041
GLU 2540.0054
VAL 2550.0056
HIS 2560.0072
ARG 2570.0068
LEU 2580.0058
VAL 2590.0063
LEU 2600.0056
GLY 2610.0060
GLU 2620.0068
PHE 2630.0082
ARG 2640.0078
ASN 2650.0097
GLU 2660.0099
GLY 2670.0084
ASN 2680.0069
LEU 2690.0063
GLU 2700.0066
LYS 2710.0060
PHE 2720.0056
ASP 2730.0058
LYS 2740.0053
SER 2750.0058
ALA 2760.0057
LEU 2770.0053
GLU 2780.0052
GLY 2790.0053
LEU 2800.0053
CYS 2810.0053
ASN 2820.0051
LEU 2830.0048
THR 2840.0054
ILE 2850.0059
GLU 2860.0070
GLU 2870.0060
PHE 2880.0056
ARG 2890.0058
LEU 2900.0054
ALA 2910.0059
TYR 2920.0051
LEU 2930.0045
ASP 2940.0051
TYR 2950.0055
TYR 2960.0051
LEU 2970.0061
ASP 2980.0073
GLY 2990.0056
ILE 3000.0037
ILE 3010.0042
ASP 3020.0043
LEU 3030.0047
PHE 3040.0039
ASN 3050.0038
CYS 3060.0047
LEU 3070.0047
THR 3080.0035
ASN 3090.0051
VAL 3100.0050
SER 3110.0047
SER 3120.0035
PHE 3130.0032
SER 3140.0031
LEU 3150.0030
VAL 3160.0030
SER 3170.0031
VAL 3180.0032
THR 3190.0042
ILE 3200.0044
GLU 3210.0065
ARG 3220.0066
VAL 3230.0054
LYS 3240.0057
ASP 3250.0034
PHE 3260.0035
SER 3270.0048
TYR 3280.0029
ASN 3290.0041
PHE 3300.0033
GLY 3310.0051
TRP 3320.0031
GLN 3330.0040
HIS 3340.0030
LEU 3350.0019
GLU 3360.0018
LEU 3370.0027
VAL 3380.0026
ASN 3390.0029
CYS 3400.0033
LYS 3410.0047
PHE 3420.0057
GLY 3430.0070
GLN 3440.0074
PHE 3450.0071
PRO 3460.0056
THR 3470.0071
LEU 3480.0064
LYS 3490.0069
LEU 3500.0065
LYS 3510.0078
SER 3520.0067
LEU 3530.0057
LYS 3540.0062
ARG 3550.0052
LEU 3560.0051
THR 3570.0053
PHE 3580.0053
THR 3590.0058
SER 3600.0061
ASN 3610.0057
LYS 3620.0063
GLY 3630.0060
GLY 3640.0063
ASN 3650.0071
ALA 3660.0080
PHE 3670.0079
SER 3680.0083
GLU 3690.0086
VAL 3700.0082
ASP 3710.0085
LEU 3720.0085
PRO 3730.0096
SER 3740.0087
LEU 3750.0080
GLU 3760.0080
PHE 3770.0059
LEU 3780.0060
ASP 3790.0060
LEU 3800.0061
SER 3810.0064
ARG 3820.0079
ASN 3830.0073
GLY 3840.0061
LEU 3850.0050
SER 3860.0037
PHE 3870.0040
LYS 3880.0050
GLY 3890.0053
CYS 3900.0042
CYS 3910.0042
SER 3920.0062
GLN 3930.0067
SER 3940.0082
ASP 3950.0079
PHE 3960.0078
GLY 3970.0092
THR 3980.0083
ILE 3990.0084
SER 4000.0073
LEU 4010.0066
LYS 4020.0042
TYR 4030.0043
LEU 4040.0043
ASP 4050.0044
LEU 4060.0044
SER 4070.0052
PHE 4080.0042
ASN 4090.0028
GLY 4100.0027
VAL 4110.0036
ILE 4120.0028
THR 4130.0043
MET 4140.0043
SER 4150.0049
SER 4160.0039
ASN 4170.0048
PHE 4180.0039
LEU 4190.0038
GLY 4200.0042
LEU 4210.0040
GLU 4220.0036
GLN 4230.0038
LEU 4240.0036
GLU 4250.0038
HIS 4260.0039
LEU 4270.0049
ASP 4280.0049
PHE 4290.0046
GLN 4300.0054
HIS 4310.0049
SER 4320.0021
ASN 4330.0035
LEU 4340.0047
LYS 4350.0062
GLN 4360.0078
MET 4370.0059
SER 4380.0068
GLU 4390.0065
PHE 4400.0062
SER 4410.0059
VAL 4420.0058
PHE 4430.0054
LEU 4440.0052
SER 4450.0044
LEU 4460.0046
ARG 4470.0041
ASN 4480.0043
LEU 4490.0052
ILE 4500.0062
TYR 4510.0073
LEU 4520.0076
ASP 4530.0080
ILE 4540.0081
SER 4550.0087
HIS 4560.0088
THR 4570.0076
HIS 4580.0071
THR 4590.0077
ARG 4600.0073
VAL 4610.0077
ALA 4620.0056
PHE 4630.0051
ASN 4640.0043
GLY 4650.0048
ILE 4660.0058
PHE 4670.0053
ASN 4680.0041
GLY 4690.0038
LEU 4700.0048
SER 4710.0042
SER 4720.0053
LEU 4730.0060
GLU 4740.0076
VAL 4750.0089
LEU 4760.0080
LYS 4770.0095
MET 4780.0095
ALA 4790.0102
GLY 4800.0112
ASN 4810.0107
SER 4820.0125
PHE 4830.0102
GLN 4840.0127
GLU 4850.0153
ASN 4860.0123
PHE 4870.0103
LEU 4880.0066
PRO 4890.0065
ASP 4900.0046
ILE 4910.0030
PHE 4920.0007
THR 4930.0026
GLU 4940.0022
LEU 4950.0039
ARG 4960.0063
ASN 4970.0082
LEU 4980.0071
THR 4990.0097
PHE 5000.0094
LEU 5010.0069
ASP 5020.0080
LEU 5030.0074
SER 5040.0093
GLN 5050.0113
CYS 5060.0103
GLN 5070.0118
LEU 5080.0088
GLU 5090.0104
GLN 5100.0096
LEU 5110.0072
SER 5120.0091
PRO 5130.0101
THR 5140.0096
ALA 5150.0056
PHE 5160.0055
ASN 5170.0089
SER 5180.0091
LEU 5190.0081
SER 5200.0119
SER 5210.0127
LEU 5220.0096
GLN 5230.0115
VAL 5240.0093
LEU 5250.0055
ASN 5260.0065
MET 5270.0041
SER 5280.0064
HIS 5290.0090
ASN 5300.0084
ASN 5310.0098
PHE 5320.0058
PHE 5330.0071
SER 5340.0063
LEU 5350.0047
ASP 5360.0061
THR 5370.0066
PHE 5380.0092
PRO 5390.0075
TYR 5400.0071
LYS 5410.0102
CYS 5420.0124
LEU 5430.0105
ASN 5440.0142
SER 5450.0138
LEU 5460.0101
GLN 5470.0091
VAL 5480.0068
LEU 5490.0038
ASP 5500.0037
TYR 5510.0033
SER 5520.0034
LEU 5530.0047
ASN 5540.0051
HIS 5550.0057
ILE 5560.0050
MET 5570.0036
THR 5580.0038
SER 5590.0044
LYS 5600.0049
LYS 5610.0057
GLN 5620.0072
GLU 5630.0074
LEU 5640.0055
GLN 5650.0062
HIS 5660.0073
PHE 5670.0073
PRO 5680.0088
SER 5690.0105
SER 5700.0101
LEU 5710.0068
ALA 5720.0036
PHE 5730.0036
LEU 5740.0031
ASN 5750.0036
LEU 5760.0037
THR 5770.0045
GLN 5780.0042
ASN 5790.0040
ASP 5800.0044
PHE 5810.0047
ALA 5820.0120
CYS 5830.0088
THR 5840.0140
CYS 5850.0171
GLU 5860.0206
HIS 5870.0106
GLN 5880.0115
SER 5890.0134
PHE 5900.0078
LEU 5910.0073
GLN 5920.0107
TRP 5930.0091
ILE 5940.0086
LYS 5950.0127
ASP 5960.0141
GLN 5970.0094
ARG 5980.0105
GLN 5990.0115
LEU 6000.0092
LEU 6010.0090
VAL 6020.0073
GLU 6030.0081
VAL 6040.0090
GLU 6050.0104
ARG 6060.0092
MET 6070.0108
GLU 6080.0118
CYS 6090.0106
ALA 6100.0152
THR 6110.0176
PRO 6120.0253
SER 6130.0317
ASP 6140.0290
LYS 6150.0192
GLN 6160.0223
GLY 6170.0203
MET 6180.0150
PRO 6190.0134
VAL 6200.0076
LEU 6210.0111
SER 6220.0156
LEU 6230.0082
ASN 6240.0126
ILE 6250.0161
THR 6260.0224
CYS 6270.0366
GLU 10.0151
ALA 20.0090
ALA 30.0084
ALA 40.0109
LYS 50.0063
MET 60.0045
GLN 70.0070
ARG 80.0110
LEU 90.0113
VAL 100.0115
LEU 110.0069
LEU 120.0065
LEU 130.0061
ALA 140.0041
ILE 150.0030
SER 160.0048
LEU 170.0066
LEU 180.0077
LEU 190.0084
TYR 200.0095
GLN 210.0107
ASP 220.0110
LEU 230.0114
PRO 240.0118
VAL 250.0117
ARG 260.0211
SER 270.0143
GLU 280.0185
PHE 290.0156
GLU 300.0080
LEU 310.0067
ASP 320.0064
ARG 330.0041
ILE 340.0026
CYS 350.0038
GLY 360.0025
TYR 370.0025
GLY 380.0010
THR 390.0016
ALA 400.0006
ARG 410.0019
CYS 420.0039
ARG 430.0053
LYS 440.0084
LYS 450.0088
CYS 460.0043
ARG 470.0052
SER 480.0067
GLN 490.0062
GLU 500.0047
TYR 510.0055
ARG 520.0048
ILE 530.0037
GLY 540.0079
ARG 550.0109
CYS 560.0098
PRO 570.0125
ASN 580.0114
THR 590.0138
TYR 600.0105
ALA 610.0057
CYS 620.0033
CYS 630.0025
LEU 640.0017
ARG 650.0043
LYS 660.0084
TRP 670.0080
ASP 680.0071
GLU 690.0047
SER 700.0054
LEU 710.0096
LEU 720.0084
ASN 730.0042
ARG 740.0062
THR 750.0103
LYS 760.0159
PRO 770.0307
GLU 780.0279
ALA 790.0485
ALA 800.0572
ALA 810.0683
LYS 820.0521
LYS 830.0458
GLU 840.0306
MET 850.0243
ASN 860.0144
LEU 870.0123
SER 880.0127
VAL 890.0127
GLY 900.0127
LEU 910.0134
GLY 920.0177
GLY 930.0346
GLY 940.0384
SER 950.0318
ASN 960.0181
LEU 970.0172
SER 980.0185
VAL 990.0176
GLY 1000.0196
LEU 1010.0177
GLY 1020.0175
GLU 1030.0204
ILE 1040.0237
GLY 1050.0324
GLY 1060.0163
GLY 1070.0169
SER 1080.0162
LYS 1090.0178
LEU 1100.0192
LEU 1110.0073
ASP 1120.0097
ILE 1130.0119
ASN 1140.0178
LEU 1150.0175
GLY 1160.0191
ARG 1170.0358
GLY 1180.0328
GLY 1190.0333
GLY 1200.0269
SER 1210.0121
MET 1220.0113
VAL 1230.0108
ASP 1240.0111
LEU 1250.0100
THR 1260.0076
PHE 1270.0084
GLY 1280.0128
GLY 1290.0180
VAL 1300.0223
GLY 1310.0313
GLY 1320.0261
GLY 1330.0146
SER 1340.0183
THR 1350.0089
PHE 1360.0140
THR 1370.0122
PHE 1380.0127
PHE 1390.0117
PRO 1400.0121
LEU 1410.0184
VAL 1420.0272
ILE 1430.0344
GLY 1440.0497
GLY 1450.0586
GLY 1460.0463
SER 1470.0392
ASP 1480.0274
ALA 1490.0258
MET 1500.0134
TYR 1510.0124
LEU 1520.0099
GLY 1530.0098
PHE 1540.0102
ALA 1550.0104
ALA 1560.0242
GLY 1570.0204
GLY 1580.0258
GLY 1590.0170
SER 1600.0101
ALA 1610.0216
GLY 1620.0183
GLY 1630.0130
GLU 1640.0106
ASN 1650.0104
HIS 1660.0111
VAL 1670.0102
ALA 1680.0119
PHE 1690.0114
GLY 1700.0130
PRO 1710.0192
GLY 1720.0214
PRO 1730.0204
GLY 1740.0180
VAL 1750.0153
ASP 1760.0143
LEU 1770.0155
THR 1780.0144
PHE 1790.0161
GLY 1800.0160
GLY 1810.0202
VAL 1820.0216
GLN 1830.0179
PHE 1840.0199
ALA 1850.0180
MET 1860.0211
VAL 1870.0226
ASN 1880.0236
ASN 1890.0240
GLY 1900.0256
PRO 1910.0211
GLY 1920.0180
PRO 1930.0106
GLY 1940.0105
GLU 1950.0078
SER 1960.0289
PHE 1970.0195
THR 1980.0172
ALA 1990.0147
GLN 2000.0060
PRO 2010.0114
ALA 2020.0066
ASP 2030.0059
MET 2040.0104
GLN 2050.0124
ALA 2060.0168
GLY 2070.0148
ILE 2080.0154
LYS 2090.0086
GLY 2100.0133
PRO 2110.0105
GLY 2120.0097
PRO 2130.0091
GLY 2140.0083
GLY 2150.0063
SER 2160.0209
ILE 2170.0187
GLN 2180.0211
VAL 2190.0203
ILE 2200.0206
ASN 2210.0365
GLY 2220.0299
SER 2230.0154
THR 2240.0075
ILE 2250.0187
GLY 2260.0299
THR 2270.0286
GLY 2280.0284
SER 2290.0262
LYS 2300.0272
LYS 2310.0234
THR 2320.0228
ILE 2330.0221
LEU 2340.0208
ILE 2350.0252
TYR 2360.0222
SER 2370.0248
ILE 2380.0294
ILE 2390.0309
GLY 2400.0370
VAL 2410.0223
LYS 2420.0163
LYS 2430.0187
GLY 2440.0216
THR 2450.0197
LEU 2460.0307
ALA 2470.0300
TRP 2480.0261
ALA 2490.0281
ARG 2500.0267
THR 2510.0384
GLY 2520.0335
PHE 2530.0210
SER 2540.0193
PRO 2550.0249
ALA 2560.0254
LYS 2570.0183
LYS 2580.0099
LEU 2590.0167
ASN 2600.0219
ALA 2610.0206
GLY 2620.0138
VAL 2630.0137
VAL 2640.0156
ARG 2650.0103
VAL 2660.0090
PHE 2670.0074
PHE 2680.0145
LEU 2690.0111
ASN 2700.0128
GLN 2710.0082
LYS 2720.0081
LYS 2730.0081
ALA 2740.0094
LYS 2750.0110
ASP 2760.0106
VAL 2770.0089
LEU 2780.0069
ARG 2790.0064
LYS 2800.0076
THR 2810.0089
SER 2820.0042
ARG 2830.0051
PRO 2840.0052
MET 2850.0032
VAL 2860.0024
ASP 2870.0023
LEU 2880.0018
THR 2890.0018
PHE 2900.0015
GLY 2910.0021
GLY 2920.0026

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.