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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 93  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0620
GLU 270.0097
PRO 280.0079
CYS 290.0056
VAL 300.0084
GLU 310.0111
VAL 320.0143
VAL 330.0153
PRO 340.0142
ASN 350.0100
ILE 360.0098
THR 370.0086
TYR 380.0051
GLN 390.0041
CYS 400.0014
MET 410.0039
GLU 420.0051
LEU 430.0043
ASN 440.0048
PHE 450.0035
TYR 460.0041
LYS 470.0054
ILE 480.0039
PRO 490.0021
ASP 500.0046
ASN 510.0057
LEU 520.0037
PRO 530.0032
PHE 540.0013
SER 550.0028
THR 560.0033
LYS 570.0054
ASN 580.0052
LEU 590.0040
ASP 600.0041
LEU 610.0043
SER 620.0049
PHE 630.0055
ASN 640.0049
PRO 650.0049
LEU 660.0038
ARG 670.0019
HIS 680.0026
LEU 690.0023
GLY 700.0042
SER 710.0043
TYR 720.0031
SER 730.0032
PHE 740.0034
PHE 750.0036
SER 760.0041
PHE 770.0035
PRO 780.0042
GLU 790.0041
LEU 800.0041
GLN 810.0048
VAL 820.0051
LEU 830.0047
ASP 840.0043
LEU 850.0041
SER 860.0043
ARG 870.0037
CYS 880.0032
GLU 890.0018
ILE 900.0011
GLN 910.0020
THR 920.0035
ILE 930.0023
GLU 940.0039
ASP 950.0040
GLY 960.0025
ALA 970.0024
TYR 980.0023
GLN 990.0027
SER 1000.0037
LEU 1010.0034
SER 1020.0036
HIS 1030.0042
LEU 1040.0041
SER 1050.0040
THR 1060.0043
LEU 1070.0031
ILE 1080.0037
LEU 1090.0024
THR 1100.0044
GLY 1110.0044
ASN 1120.0030
PRO 1130.0033
ILE 1140.0042
GLN 1150.0061
SER 1160.0064
LEU 1170.0055
ALA 1180.0058
LEU 1190.0062
GLY 1200.0040
ALA 1210.0027
PHE 1220.0023
SER 1230.0024
GLY 1240.0022
LEU 1250.0023
SER 1260.0023
SER 1270.0016
LEU 1280.0018
GLN 1290.0038
LYS 1300.0042
LEU 1310.0028
VAL 1320.0067
ALA 1330.0065
VAL 1340.0077
GLU 1350.0078
THR 1360.0067
ASN 1370.0096
LEU 1380.0097
ALA 1390.0099
SER 1400.0101
LEU 1410.0101
GLU 1420.0086
ASN 1430.0085
PHE 1440.0084
PRO 1450.0079
ILE 1460.0079
GLY 1470.0082
HIS 1480.0083
LEU 1490.0072
LYS 1500.0082
THR 1510.0073
LEU 1520.0052
LYS 1530.0061
GLU 1540.0061
LEU 1550.0059
ASN 1560.0059
VAL 1570.0107
ALA 1580.0116
HIS 1590.0127
ASN 1600.0122
LEU 1610.0122
ILE 1620.0130
GLN 1630.0116
SER 1640.0090
PHE 1650.0065
LYS 1660.0062
LEU 1670.0073
PRO 1680.0078
GLU 1690.0073
TYR 1700.0089
PHE 1710.0086
SER 1720.0095
ASN 1730.0095
LEU 1740.0087
THR 1750.0092
ASN 1760.0085
LEU 1770.0068
GLU 1780.0075
HIS 1790.0083
LEU 1800.0084
ASP 1810.0094
LEU 1820.0112
SER 1830.0127
SER 1840.0146
ASN 1850.0139
LYS 1860.0135
ILE 1870.0108
GLN 1880.0104
SER 1890.0081
ILE 1900.0048
TYR 1910.0085
CYS 1920.0088
THR 1930.0075
ASP 1940.0037
LEU 1950.0030
ARG 1960.0032
VAL 1970.0033
LEU 1980.0063
HIS 1990.0067
GLN 2000.0055
MET 2010.0093
PRO 2020.0087
LEU 2030.0103
LEU 2040.0088
ASN 2050.0091
LEU 2060.0074
SER 2070.0111
LEU 2080.0092
ASP 2090.0105
LEU 2100.0088
SER 2110.0106
LEU 2120.0130
ASN 2130.0105
PRO 2140.0102
MET 2150.0059
ASN 2160.0089
PHE 2170.0094
ILE 2180.0073
GLN 2190.0124
PRO 2200.0168
GLY 2210.0177
ALA 2220.0109
PHE 2230.0127
LYS 2240.0191
GLU 2250.0225
ILE 2260.0185
ARG 2270.0159
LEU 2280.0146
HIS 2290.0171
LYS 2300.0148
LEU 2310.0113
THR 2320.0126
LEU 2330.0091
ARG 2340.0101
ASN 2350.0086
ASN 2360.0066
PHE 2370.0045
ASP 2380.0076
SER 2390.0071
LEU 2400.0078
ASN 2410.0114
VAL 2420.0069
MET 2430.0056
LYS 2440.0101
THR 2450.0104
CYS 2460.0072
ILE 2470.0100
GLN 2480.0131
GLY 2490.0109
LEU 2500.0123
ALA 2510.0167
GLY 2520.0166
LEU 2530.0154
GLU 2540.0182
VAL 2550.0170
HIS 2560.0196
ARG 2570.0176
LEU 2580.0149
VAL 2590.0139
LEU 2600.0114
GLY 2610.0104
GLU 2620.0089
PHE 2630.0122
ARG 2640.0110
ASN 2650.0155
GLU 2660.0154
GLY 2670.0116
ASN 2680.0077
LEU 2690.0064
GLU 2700.0092
LYS 2710.0097
PHE 2720.0084
ASP 2730.0095
LYS 2740.0111
SER 2750.0115
ALA 2760.0103
LEU 2770.0104
GLU 2780.0121
GLY 2790.0124
LEU 2800.0135
CYS 2810.0157
ASN 2820.0155
LEU 2830.0154
THR 2840.0181
ILE 2850.0174
GLU 2860.0201
GLU 2870.0149
PHE 2880.0136
ARG 2890.0131
LEU 2900.0119
ALA 2910.0119
TYR 2920.0099
LEU 2930.0078
ASP 2940.0068
TYR 2950.0073
TYR 2960.0086
LEU 2970.0095
ASP 2980.0102
GLY 2990.0096
ILE 3000.0089
ILE 3010.0092
ASP 3020.0095
LEU 3030.0093
PHE 3040.0097
ASN 3050.0101
CYS 3060.0107
LEU 3070.0099
THR 3080.0085
ASN 3090.0110
VAL 3100.0110
SER 3110.0103
SER 3120.0091
PHE 3130.0088
SER 3140.0087
LEU 3150.0084
VAL 3160.0085
SER 3170.0085
VAL 3180.0080
THR 3190.0080
ILE 3200.0083
GLU 3210.0098
ARG 3220.0088
VAL 3230.0082
LYS 3240.0081
ASP 3250.0065
PHE 3260.0067
SER 3270.0073
TYR 3280.0060
ASN 3290.0069
PHE 3300.0058
GLY 3310.0065
TRP 3320.0024
GLN 3330.0013
HIS 3340.0027
LEU 3350.0036
GLU 3360.0056
LEU 3370.0054
VAL 3380.0056
ASN 3390.0063
CYS 3400.0065
LYS 3410.0074
PHE 3420.0076
GLY 3430.0083
GLN 3440.0084
PHE 3450.0081
PRO 3460.0065
THR 3470.0084
LEU 3480.0080
LYS 3490.0080
LEU 3500.0075
LYS 3510.0086
SER 3520.0066
LEU 3530.0059
LYS 3540.0066
ARG 3550.0064
LEU 3560.0069
THR 3570.0057
PHE 3580.0056
THR 3590.0066
SER 3600.0071
ASN 3610.0063
LYS 3620.0070
GLY 3630.0061
GLY 3640.0058
ASN 3650.0068
ALA 3660.0081
PHE 3670.0091
SER 3680.0094
GLU 3690.0094
VAL 3700.0093
ASP 3710.0093
LEU 3720.0105
PRO 3730.0114
SER 3740.0103
LEU 3750.0100
GLU 3760.0101
PHE 3770.0073
LEU 3780.0068
ASP 3790.0071
LEU 3800.0066
SER 3810.0071
ARG 3820.0067
ASN 3830.0067
GLY 3840.0057
LEU 3850.0047
SER 3860.0041
PHE 3870.0068
LYS 3880.0081
GLY 3890.0080
CYS 3900.0063
CYS 3910.0053
SER 3920.0068
GLN 3930.0073
SER 3940.0090
ASP 3950.0095
PHE 3960.0094
GLY 3970.0114
THR 3980.0102
ILE 3990.0099
SER 4000.0087
LEU 4010.0082
LYS 4020.0048
TYR 4030.0048
LEU 4040.0047
ASP 4050.0048
LEU 4060.0048
SER 4070.0025
PHE 4080.0043
ASN 4090.0049
GLY 4100.0064
VAL 4110.0067
ILE 4120.0070
THR 4130.0083
MET 4140.0073
SER 4150.0082
SER 4160.0066
ASN 4170.0059
PHE 4180.0044
LEU 4190.0027
GLY 4200.0036
LEU 4210.0035
GLU 4220.0016
GLN 4230.0023
LEU 4240.0026
GLU 4250.0021
HIS 4260.0038
LEU 4270.0024
ASP 4280.0025
PHE 4290.0036
GLN 4300.0031
HIS 4310.0040
SER 4320.0055
ASN 4330.0071
LEU 4340.0074
LYS 4350.0094
GLN 4360.0106
MET 4370.0103
SER 4380.0115
GLU 4390.0118
PHE 4400.0107
SER 4410.0096
VAL 4420.0083
PHE 4430.0070
LEU 4440.0068
SER 4450.0048
LEU 4460.0046
ARG 4470.0047
ASN 4480.0039
LEU 4490.0050
ILE 4500.0059
TYR 4510.0070
LEU 4520.0058
ASP 4530.0055
ILE 4540.0058
SER 4550.0052
HIS 4560.0053
THR 4570.0060
HIS 4580.0070
THR 4590.0072
ARG 4600.0081
VAL 4610.0081
ALA 4620.0109
PHE 4630.0111
ASN 4640.0109
GLY 4650.0111
ILE 4660.0109
PHE 4670.0093
ASN 4680.0093
GLY 4690.0090
LEU 4700.0089
SER 4710.0089
SER 4720.0086
LEU 4730.0084
GLU 4740.0088
VAL 4750.0088
LEU 4760.0081
LYS 4770.0068
MET 4780.0066
ALA 4790.0061
GLY 4800.0063
ASN 4810.0064
SER 4820.0063
PHE 4830.0043
GLN 4840.0038
GLU 4850.0020
ASN 4860.0021
PHE 4870.0013
LEU 4880.0020
PRO 4890.0036
ASP 4900.0059
ILE 4910.0071
PHE 4920.0074
THR 4930.0081
GLU 4940.0097
LEU 4950.0095
ARG 4960.0100
ASN 4970.0103
LEU 4980.0089
THR 4990.0089
PHE 5000.0081
LEU 5010.0068
ASP 5020.0057
LEU 5030.0042
SER 5040.0052
GLN 5050.0062
CYS 5060.0049
GLN 5070.0066
LEU 5080.0046
GLU 5090.0060
GLN 5100.0050
LEU 5110.0037
SER 5120.0036
PRO 5130.0059
THR 5140.0064
ALA 5150.0041
PHE 5160.0052
ASN 5170.0074
SER 5180.0093
LEU 5190.0084
SER 5200.0098
SER 5210.0102
LEU 5220.0070
GLN 5230.0067
VAL 5240.0052
LEU 5250.0031
ASN 5260.0039
MET 5270.0032
SER 5280.0052
HIS 5290.0076
ASN 5300.0074
ASN 5310.0091
PHE 5320.0090
PHE 5330.0104
SER 5340.0096
LEU 5350.0079
ASP 5360.0081
THR 5370.0068
PHE 5380.0076
PRO 5390.0052
TYR 5400.0046
LYS 5410.0069
CYS 5420.0084
LEU 5430.0064
ASN 5440.0088
SER 5450.0076
LEU 5460.0044
GLN 5470.0024
VAL 5480.0017
LEU 5490.0026
ASP 5500.0042
TYR 5510.0061
SER 5520.0067
LEU 5530.0080
ASN 5540.0086
HIS 5550.0095
ILE 5560.0089
MET 5570.0079
THR 5580.0081
SER 5590.0084
LYS 5600.0100
LYS 5610.0105
GLN 5620.0108
GLU 5630.0093
LEU 5640.0080
GLN 5650.0081
HIS 5660.0069
PHE 5670.0065
PRO 5680.0056
SER 5690.0074
SER 5700.0048
LEU 5710.0034
ALA 5720.0075
PHE 5730.0074
LEU 5740.0073
ASN 5750.0073
LEU 5760.0074
THR 5770.0066
GLN 5780.0062
ASN 5790.0060
ASP 5800.0046
PHE 5810.0032
ALA 5820.0046
CYS 5830.0081
THR 5840.0128
CYS 5850.0171
GLU 5860.0167
HIS 5870.0082
GLN 5880.0104
SER 5890.0127
PHE 5900.0096
LEU 5910.0069
GLN 5920.0092
TRP 5930.0101
ILE 5940.0080
LYS 5950.0088
ASP 5960.0119
GLN 5970.0100
ARG 5980.0090
GLN 5990.0113
LEU 6000.0112
LEU 6010.0092
VAL 6020.0082
GLU 6030.0073
VAL 6040.0059
GLU 6050.0060
ARG 6060.0062
MET 6070.0069
GLU 6080.0062
CYS 6090.0057
ALA 6100.0086
THR 6110.0097
PRO 6120.0188
SER 6130.0251
ASP 6140.0280
LYS 6150.0197
GLN 6160.0186
GLY 6170.0144
MET 6180.0102
PRO 6190.0048
VAL 6200.0016
LEU 6210.0043
SER 6220.0064
LEU 6230.0086
ASN 6240.0139
ILE 6250.0150
THR 6260.0202
CYS 6270.0341
GLU 10.0171
ALA 20.0145
ALA 30.0099
ALA 40.0093
LYS 50.0050
MET 60.0068
GLN 70.0076
ARG 80.0120
LEU 90.0130
VAL 100.0126
LEU 110.0080
LEU 120.0078
LEU 130.0068
ALA 140.0022
ILE 150.0035
SER 160.0071
LEU 170.0100
LEU 180.0108
LEU 190.0111
TYR 200.0126
GLN 210.0139
ASP 220.0139
LEU 230.0139
PRO 240.0153
VAL 250.0149
ARG 260.0384
SER 270.0234
GLU 280.0315
PHE 290.0232
GLU 300.0075
LEU 310.0125
ASP 320.0126
ARG 330.0085
ILE 340.0129
CYS 350.0192
GLY 360.0119
TYR 370.0124
GLY 380.0136
THR 390.0127
ALA 400.0132
ARG 410.0121
CYS 420.0188
ARG 430.0234
LYS 440.0309
LYS 450.0309
CYS 460.0174
ARG 470.0162
SER 480.0167
GLN 490.0147
GLU 500.0149
TYR 510.0200
ARG 520.0208
ILE 530.0172
GLY 540.0208
ARG 550.0254
CYS 560.0280
PRO 570.0322
ASN 580.0352
THR 590.0350
TYR 600.0324
ALA 610.0212
CYS 620.0174
CYS 630.0160
LEU 640.0128
ARG 650.0131
LYS 660.0181
TRP 670.0187
ASP 680.0142
GLU 690.0119
SER 700.0098
LEU 710.0138
LEU 720.0117
ASN 730.0071
ARG 740.0092
THR 750.0095
LYS 760.0063
PRO 770.0148
GLU 780.0165
ALA 790.0271
ALA 800.0303
ALA 810.0460
LYS 820.0359
LYS 830.0330
GLU 840.0238
MET 850.0199
ASN 860.0118
LEU 870.0093
SER 880.0093
VAL 890.0082
GLY 900.0083
LEU 910.0086
GLY 920.0094
GLY 930.0163
GLY 940.0184
SER 950.0162
ASN 960.0107
LEU 970.0101
SER 980.0115
VAL 990.0110
GLY 1000.0130
LEU 1010.0147
GLY 1020.0144
GLU 1030.0162
ILE 1040.0243
GLY 1050.0314
GLY 1060.0105
GLY 1070.0128
SER 1080.0140
LYS 1090.0150
LEU 1100.0175
LEU 1110.0088
ASP 1120.0113
ILE 1130.0088
ASN 1140.0160
LEU 1150.0140
GLY 1160.0140
ARG 1170.0192
GLY 1180.0220
GLY 1190.0211
GLY 1200.0150
SER 1210.0055
MET 1220.0055
VAL 1230.0052
ASP 1240.0053
LEU 1250.0050
THR 1260.0039
PHE 1270.0069
GLY 1280.0115
GLY 1290.0151
VAL 1300.0185
GLY 1310.0409
GLY 1320.0315
GLY 1330.0180
SER 1340.0181
THR 1350.0077
PHE 1360.0102
THR 1370.0087
PHE 1380.0096
PHE 1390.0084
PRO 1400.0095
LEU 1410.0119
VAL 1420.0170
ILE 1430.0201
GLY 1440.0314
GLY 1450.0357
GLY 1460.0368
SER 1470.0309
ASP 1480.0218
ALA 1490.0201
MET 1500.0112
TYR 1510.0078
LEU 1520.0074
GLY 1530.0073
PHE 1540.0073
ALA 1550.0074
ALA 1560.0235
GLY 1570.0205
GLY 1580.0230
GLY 1590.0137
SER 1600.0130
ALA 1610.0215
GLY 1620.0180
GLY 1630.0121
GLU 1640.0094
ASN 1650.0063
HIS 1660.0070
VAL 1670.0072
ALA 1680.0082
PHE 1690.0089
GLY 1700.0100
PRO 1710.0096
GLY 1720.0110
PRO 1730.0105
GLY 1740.0091
VAL 1750.0099
ASP 1760.0102
LEU 1770.0106
THR 1780.0101
PHE 1790.0111
GLY 1800.0111
GLY 1810.0110
VAL 1820.0112
GLN 1830.0112
PHE 1840.0134
ALA 1850.0145
MET 1860.0160
VAL 1870.0129
ASN 1880.0114
ASN 1890.0158
GLY 1900.0202
PRO 1910.0277
GLY 1920.0176
PRO 1930.0015
GLY 1940.0141
GLU 1950.0036
SER 1960.0044
PHE 1970.0041
THR 1980.0030
ALA 1990.0035
GLN 2000.0035
PRO 2010.0042
ALA 2020.0026
ASP 2030.0059
MET 2040.0081
GLN 2050.0075
ALA 2060.0121
GLY 2070.0086
ILE 2080.0071
LYS 2090.0036
GLY 2100.0019
PRO 2110.0076
GLY 2120.0034
PRO 2130.0020
GLY 2140.0049
GLY 2150.0057
SER 2160.0083
ILE 2170.0071
GLN 2180.0166
VAL 2190.0240
ILE 2200.0338
ASN 2210.0620
GLY 2220.0448
SER 2230.0233
THR 2240.0172
ILE 2250.0264
GLY 2260.0247
THR 2270.0194
GLY 2280.0155
SER 2290.0168
LYS 2300.0119
LYS 2310.0117
THR 2320.0126
ILE 2330.0081
LEU 2340.0106
ILE 2350.0076
TYR 2360.0125
SER 2370.0123
ILE 2380.0141
ILE 2390.0123
GLY 2400.0168
VAL 2410.0084
LYS 2420.0088
LYS 2430.0104
GLY 2440.0104
THR 2450.0088
LEU 2460.0053
ALA 2470.0058
TRP 2480.0041
ALA 2490.0052
ARG 2500.0043
THR 2510.0134
GLY 2520.0124
PHE 2530.0139
SER 2540.0135
PRO 2550.0148
ALA 2560.0030
LYS 2570.0070
LYS 2580.0143
LEU 2590.0185
ASN 2600.0262
ALA 2610.0368
GLY 2620.0256
VAL 2630.0276
VAL 2640.0371
ARG 2650.0189
VAL 2660.0059
PHE 2670.0078
PHE 2680.0011
LEU 2690.0049
ASN 2700.0046
GLN 2710.0055
LYS 2720.0032
LYS 2730.0049
ALA 2740.0076
LYS 2750.0104
ASP 2760.0113
VAL 2770.0099
LEU 2780.0077
ARG 2790.0057
LYS 2800.0071
THR 2810.0103
SER 2820.0045
ARG 2830.0054
PRO 2840.0088
MET 2850.0082
VAL 2860.0070
ASP 2870.0066
LEU 2880.0048
THR 2890.0047
PHE 2900.0033
GLY 2910.0046
GLY 2920.0048

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.