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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 94  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0767
GLU 270.0124
PRO 280.0151
CYS 290.0105
VAL 300.0111
GLU 310.0070
VAL 320.0114
VAL 330.0113
PRO 340.0078
ASN 350.0099
ILE 360.0117
THR 370.0088
TYR 380.0063
GLN 390.0100
CYS 400.0098
MET 410.0145
GLU 420.0169
LEU 430.0153
ASN 440.0148
PHE 450.0107
TYR 460.0097
LYS 470.0092
ILE 480.0054
PRO 490.0066
ASP 500.0085
ASN 510.0100
LEU 520.0065
PRO 530.0087
PHE 540.0106
SER 550.0114
THR 560.0077
LYS 570.0085
ASN 580.0080
LEU 590.0060
ASP 600.0082
LEU 610.0081
SER 620.0106
PHE 630.0116
ASN 640.0099
PRO 650.0094
LEU 660.0072
ARG 670.0082
HIS 680.0077
LEU 690.0071
GLY 700.0068
SER 710.0065
TYR 720.0053
SER 730.0058
PHE 740.0037
PHE 750.0035
SER 760.0051
PHE 770.0048
PRO 780.0057
GLU 790.0068
LEU 800.0054
GLN 810.0068
VAL 820.0043
LEU 830.0047
ASP 840.0057
LEU 850.0068
SER 860.0082
ARG 870.0075
CYS 880.0075
GLU 890.0080
ILE 900.0081
GLN 910.0087
THR 920.0088
ILE 930.0079
GLU 940.0084
ASP 950.0085
GLY 960.0075
ALA 970.0064
TYR 980.0054
GLN 990.0059
SER 1000.0047
LEU 1010.0045
SER 1020.0042
HIS 1030.0037
LEU 1040.0034
SER 1050.0045
THR 1060.0039
LEU 1070.0034
ILE 1080.0031
LEU 1090.0040
THR 1100.0042
GLY 1110.0053
ASN 1120.0067
PRO 1130.0076
ILE 1140.0074
GLN 1150.0084
SER 1160.0086
LEU 1170.0080
ALA 1180.0086
LEU 1190.0076
GLY 1200.0081
ALA 1210.0070
PHE 1220.0052
SER 1230.0066
GLY 1240.0065
LEU 1250.0050
SER 1260.0061
SER 1270.0065
LEU 1280.0052
GLN 1290.0051
LYS 1300.0038
LEU 1310.0028
VAL 1320.0027
ALA 1330.0020
VAL 1340.0029
GLU 1350.0034
THR 1360.0028
ASN 1370.0058
LEU 1380.0056
ALA 1390.0059
SER 1400.0057
LEU 1410.0054
GLU 1420.0058
ASN 1430.0058
PHE 1440.0043
PRO 1450.0036
ILE 1460.0027
GLY 1470.0050
HIS 1480.0053
LEU 1490.0048
LYS 1500.0046
THR 1510.0050
LEU 1520.0055
LYS 1530.0054
GLU 1540.0048
LEU 1550.0037
ASN 1560.0036
VAL 1570.0057
ALA 1580.0062
HIS 1590.0061
ASN 1600.0059
LEU 1610.0063
ILE 1620.0088
GLN 1630.0080
SER 1640.0079
PHE 1650.0079
LYS 1660.0087
LEU 1670.0093
PRO 1680.0090
GLU 1690.0085
TYR 1700.0076
PHE 1710.0074
SER 1720.0078
ASN 1730.0070
LEU 1740.0063
THR 1750.0057
ASN 1760.0052
LEU 1770.0065
GLU 1780.0065
HIS 1790.0063
LEU 1800.0057
ASP 1810.0060
LEU 1820.0078
SER 1830.0075
SER 1840.0077
ASN 1850.0078
LYS 1860.0074
ILE 1870.0077
GLN 1880.0059
SER 1890.0044
ILE 1900.0050
TYR 1910.0050
CYS 1920.0079
THR 1930.0092
ASP 1940.0094
LEU 1950.0102
ARG 1960.0117
VAL 1970.0111
LEU 1980.0104
HIS 1990.0111
GLN 2000.0116
MET 2010.0110
PRO 2020.0111
LEU 2030.0109
LEU 2040.0096
ASN 2050.0077
LEU 2060.0067
SER 2070.0073
LEU 2080.0067
ASP 2090.0067
LEU 2100.0061
SER 2110.0065
LEU 2120.0070
ASN 2130.0069
PRO 2140.0065
MET 2150.0040
ASN 2160.0049
PHE 2170.0026
ILE 2180.0015
GLN 2190.0027
PRO 2200.0061
GLY 2210.0088
ALA 2220.0078
PHE 2230.0088
LYS 2240.0115
GLU 2250.0144
ILE 2260.0131
ARG 2270.0092
LEU 2280.0080
HIS 2290.0079
LYS 2300.0061
LEU 2310.0048
THR 2320.0053
LEU 2330.0030
ARG 2340.0036
ASN 2350.0039
ASN 2360.0041
PHE 2370.0060
ASP 2380.0105
SER 2390.0114
LEU 2400.0114
ASN 2410.0138
VAL 2420.0087
MET 2430.0065
LYS 2440.0095
THR 2450.0080
CYS 2460.0039
ILE 2470.0055
GLN 2480.0074
GLY 2490.0046
LEU 2500.0063
ALA 2510.0094
GLY 2520.0103
LEU 2530.0087
GLU 2540.0093
VAL 2550.0070
HIS 2560.0069
ARG 2570.0054
LEU 2580.0044
VAL 2590.0038
LEU 2600.0029
GLY 2610.0022
GLU 2620.0019
PHE 2630.0061
ARG 2640.0063
ASN 2650.0113
GLU 2660.0110
GLY 2670.0108
ASN 2680.0075
LEU 2690.0086
GLU 2700.0126
LYS 2710.0135
PHE 2720.0095
ASP 2730.0115
LYS 2740.0127
SER 2750.0128
ALA 2760.0107
LEU 2770.0085
GLU 2780.0103
GLY 2790.0082
LEU 2800.0083
CYS 2810.0108
ASN 2820.0092
LEU 2830.0083
THR 2840.0091
ILE 2850.0071
GLU 2860.0075
GLU 2870.0046
PHE 2880.0047
ARG 2890.0049
LEU 2900.0051
ALA 2910.0052
TYR 2920.0049
LEU 2930.0046
ASP 2940.0029
TYR 2950.0059
TYR 2960.0076
LEU 2970.0097
ASP 2980.0110
GLY 2990.0111
ILE 3000.0102
ILE 3010.0110
ASP 3020.0101
LEU 3030.0087
PHE 3040.0082
ASN 3050.0089
CYS 3060.0073
LEU 3070.0052
THR 3080.0054
ASN 3090.0058
VAL 3100.0055
SER 3110.0056
SER 3120.0044
PHE 3130.0051
SER 3140.0060
LEU 3150.0069
VAL 3160.0077
SER 3170.0086
VAL 3180.0087
THR 3190.0097
ILE 3200.0106
GLU 3210.0119
ARG 3220.0108
VAL 3230.0100
LYS 3240.0106
ASP 3250.0094
PHE 3260.0086
SER 3270.0070
TYR 3280.0064
ASN 3290.0054
PHE 3300.0048
GLY 3310.0040
TRP 3320.0028
GLN 3330.0031
HIS 3340.0036
LEU 3350.0039
GLU 3360.0052
LEU 3370.0077
VAL 3380.0089
ASN 3390.0105
CYS 3400.0102
LYS 3410.0116
PHE 3420.0112
GLY 3430.0123
GLN 3440.0108
PHE 3450.0088
PRO 3460.0076
THR 3470.0072
LEU 3480.0057
LYS 3490.0047
LEU 3500.0040
LYS 3510.0042
SER 3520.0035
LEU 3530.0030
LYS 3540.0037
ARG 3550.0037
LEU 3560.0034
THR 3570.0046
PHE 3580.0056
THR 3590.0075
SER 3600.0095
ASN 3610.0092
LYS 3620.0116
GLY 3630.0115
GLY 3640.0102
ASN 3650.0076
ALA 3660.0061
PHE 3670.0038
SER 3680.0036
GLU 3690.0032
VAL 3700.0028
ASP 3710.0035
LEU 3720.0033
PRO 3730.0033
SER 3740.0032
LEU 3750.0027
GLU 3760.0028
PHE 3770.0029
LEU 3780.0018
ASP 3790.0025
LEU 3800.0026
SER 3810.0039
ARG 3820.0051
ASN 3830.0047
GLY 3840.0038
LEU 3850.0034
SER 3860.0028
PHE 3870.0007
LYS 3880.0015
GLY 3890.0021
CYS 3900.0016
CYS 3910.0015
SER 3920.0022
GLN 3930.0023
SER 3940.0020
ASP 3950.0016
PHE 3960.0017
GLY 3970.0030
THR 3980.0025
ILE 3990.0021
SER 4000.0021
LEU 4010.0019
LYS 4020.0021
TYR 4030.0015
LEU 4040.0010
ASP 4050.0006
LEU 4060.0007
SER 4070.0026
PHE 4080.0025
ASN 4090.0009
GLY 4100.0024
VAL 4110.0039
ILE 4120.0016
THR 4130.0022
MET 4140.0024
SER 4150.0027
SER 4160.0026
ASN 4170.0016
PHE 4180.0018
LEU 4190.0011
GLY 4200.0012
LEU 4210.0016
GLU 4220.0015
GLN 4230.0022
LEU 4240.0027
GLU 4250.0034
HIS 4260.0038
LEU 4270.0035
ASP 4280.0033
PHE 4290.0033
GLN 4300.0031
HIS 4310.0031
SER 4320.0016
ASN 4330.0020
LEU 4340.0019
LYS 4350.0025
GLN 4360.0029
MET 4370.0036
SER 4380.0035
GLU 4390.0031
PHE 4400.0027
SER 4410.0027
VAL 4420.0032
PHE 4430.0038
LEU 4440.0031
SER 4450.0029
LEU 4460.0040
ARG 4470.0047
ASN 4480.0053
LEU 4490.0057
ILE 4500.0069
TYR 4510.0072
LEU 4520.0053
ASP 4530.0051
ILE 4540.0050
SER 4550.0047
HIS 4560.0047
THR 4570.0032
HIS 4580.0040
THR 4590.0039
ARG 4600.0046
VAL 4610.0044
ALA 4620.0050
PHE 4630.0048
ASN 4640.0051
GLY 4650.0049
ILE 4660.0052
PHE 4670.0065
ASN 4680.0062
GLY 4690.0066
LEU 4700.0074
SER 4710.0080
SER 4720.0089
LEU 4730.0083
GLU 4740.0089
VAL 4750.0085
LEU 4760.0073
LYS 4770.0057
MET 4780.0055
ALA 4790.0050
GLY 4800.0049
ASN 4810.0052
SER 4820.0053
PHE 4830.0056
GLN 4840.0061
GLU 4850.0052
ASN 4860.0043
PHE 4870.0049
LEU 4880.0053
PRO 4890.0064
ASP 4900.0072
ILE 4910.0076
PHE 4920.0078
THR 4930.0086
GLU 4940.0095
LEU 4950.0092
ARG 4960.0096
ASN 4970.0102
LEU 4980.0089
THR 4990.0085
PHE 5000.0076
LEU 5010.0065
ASP 5020.0046
LEU 5030.0042
SER 5040.0034
GLN 5050.0037
CYS 5060.0039
GLN 5070.0028
LEU 5080.0024
GLU 5090.0020
GLN 5100.0036
LEU 5110.0046
SER 5120.0054
PRO 5130.0061
THR 5140.0073
ALA 5150.0066
PHE 5160.0067
ASN 5170.0085
SER 5180.0098
LEU 5190.0087
SER 5200.0092
SER 5210.0090
LEU 5220.0073
GLN 5230.0062
VAL 5240.0047
LEU 5250.0037
ASN 5260.0028
MET 5270.0015
SER 5280.0017
HIS 5290.0027
ASN 5300.0014
ASN 5310.0018
PHE 5320.0031
PHE 5330.0042
SER 5340.0040
LEU 5350.0032
ASP 5360.0033
THR 5370.0041
PHE 5380.0048
PRO 5390.0042
TYR 5400.0046
LYS 5410.0060
CYS 5420.0084
LEU 5430.0070
ASN 5440.0083
SER 5450.0072
LEU 5460.0051
GLN 5470.0030
VAL 5480.0016
LEU 5490.0020
ASP 5500.0019
TYR 5510.0033
SER 5520.0044
LEU 5530.0043
ASN 5540.0041
HIS 5550.0042
ILE 5560.0046
MET 5570.0047
THR 5580.0040
SER 5590.0033
LYS 5600.0046
LYS 5610.0044
GLN 5620.0049
GLU 5630.0040
LEU 5640.0039
GLN 5650.0055
HIS 5660.0045
PHE 5670.0050
PRO 5680.0062
SER 5690.0077
SER 5700.0063
LEU 5710.0041
ALA 5720.0039
PHE 5730.0041
LEU 5740.0046
ASN 5750.0048
LEU 5760.0056
THR 5770.0052
GLN 5780.0052
ASN 5790.0047
ASP 5800.0043
PHE 5810.0034
ALA 5820.0038
CYS 5830.0062
THR 5840.0095
CYS 5850.0156
GLU 5860.0160
HIS 5870.0075
GLN 5880.0082
SER 5890.0085
PHE 5900.0048
LEU 5910.0033
GLN 5920.0046
TRP 5930.0031
ILE 5940.0011
LYS 5950.0033
ASP 5960.0023
GLN 5970.0028
ARG 5980.0024
GLN 5990.0036
LEU 6000.0049
LEU 6010.0048
VAL 6020.0075
GLU 6030.0067
VAL 6040.0056
GLU 6050.0052
ARG 6060.0058
MET 6070.0052
GLU 6080.0067
CYS 6090.0063
ALA 6100.0073
THR 6110.0064
PRO 6120.0089
SER 6130.0129
ASP 6140.0175
LYS 6150.0163
GLN 6160.0160
GLY 6170.0138
MET 6180.0123
PRO 6190.0092
VAL 6200.0056
LEU 6210.0062
SER 6220.0156
LEU 6230.0122
ASN 6240.0151
ILE 6250.0148
THR 6260.0193
CYS 6270.0240
GLU 10.0094
ALA 20.0081
ALA 30.0026
ALA 40.0028
LYS 50.0081
MET 60.0055
GLN 70.0065
ARG 80.0066
LEU 90.0051
VAL 100.0052
LEU 110.0032
LEU 120.0006
LEU 130.0024
ALA 140.0049
ILE 150.0045
SER 160.0057
LEU 170.0052
LEU 180.0056
LEU 190.0056
TYR 200.0049
GLN 210.0048
ASP 220.0037
LEU 230.0016
PRO 240.0032
VAL 250.0035
ARG 260.0191
SER 270.0123
GLU 280.0187
PHE 290.0160
GLU 300.0071
LEU 310.0105
ASP 320.0103
ARG 330.0080
ILE 340.0099
CYS 350.0124
GLY 360.0081
TYR 370.0092
GLY 380.0117
THR 390.0114
ALA 400.0115
ARG 410.0090
CYS 420.0086
ARG 430.0065
LYS 440.0062
LYS 450.0098
CYS 460.0110
ARG 470.0094
SER 480.0114
GLN 490.0098
GLU 500.0109
TYR 510.0182
ARG 520.0183
ILE 530.0204
GLY 540.0200
ARG 550.0180
CYS 560.0162
PRO 570.0168
ASN 580.0128
THR 590.0130
TYR 600.0114
ALA 610.0119
CYS 620.0125
CYS 630.0112
LEU 640.0122
ARG 650.0105
LYS 660.0128
TRP 670.0109
ASP 680.0080
GLU 690.0060
SER 700.0040
LEU 710.0074
LEU 720.0064
ASN 730.0042
ARG 740.0056
THR 750.0069
LYS 760.0046
PRO 770.0048
GLU 780.0066
ALA 790.0091
ALA 800.0096
ALA 810.0128
LYS 820.0109
LYS 830.0113
GLU 840.0124
MET 850.0127
ASN 860.0138
LEU 870.0121
SER 880.0121
VAL 890.0109
GLY 900.0109
LEU 910.0102
GLY 920.0112
GLY 930.0154
GLY 940.0183
SER 950.0169
ASN 960.0125
LEU 970.0122
SER 980.0133
VAL 990.0138
GLY 1000.0148
LEU 1010.0190
GLY 1020.0188
GLU 1030.0173
ILE 1040.0165
GLY 1050.0161
GLY 1060.0126
GLY 1070.0117
SER 1080.0132
LYS 1090.0140
LEU 1100.0152
LEU 1110.0108
ASP 1120.0145
ILE 1130.0095
ASN 1140.0159
LEU 1150.0112
GLY 1160.0189
ARG 1170.0227
GLY 1180.0184
GLY 1190.0188
GLY 1200.0177
SER 1210.0028
MET 1220.0029
VAL 1230.0037
ASP 1240.0050
LEU 1250.0063
THR 1260.0068
PHE 1270.0048
GLY 1280.0099
GLY 1290.0121
VAL 1300.0145
GLY 1310.0329
GLY 1320.0272
GLY 1330.0155
SER 1340.0169
THR 1350.0061
PHE 1360.0064
THR 1370.0048
PHE 1380.0061
PHE 1390.0052
PRO 1400.0070
LEU 1410.0091
VAL 1420.0136
ILE 1430.0215
GLY 1440.0341
GLY 1450.0434
GLY 1460.0396
SER 1470.0329
ASP 1480.0252
ALA 1490.0188
MET 1500.0098
TYR 1510.0035
LEU 1520.0036
GLY 1530.0036
PHE 1540.0041
ALA 1550.0045
ALA 1560.0177
GLY 1570.0175
GLY 1580.0246
GLY 1590.0155
SER 1600.0063
ALA 1610.0096
GLY 1620.0087
GLY 1630.0081
GLU 1640.0084
ASN 1650.0087
HIS 1660.0073
VAL 1670.0073
ALA 1680.0066
PHE 1690.0070
GLY 1700.0066
PRO 1710.0076
GLY 1720.0078
PRO 1730.0081
GLY 1740.0086
VAL 1750.0090
ASP 1760.0091
LEU 1770.0096
THR 1780.0102
PHE 1790.0125
GLY 1800.0144
GLY 1810.0177
VAL 1820.0139
GLN 1830.0109
PHE 1840.0120
ALA 1850.0145
MET 1860.0200
VAL 1870.0180
ASN 1880.0071
ASN 1890.0155
GLY 1900.0211
PRO 1910.0312
GLY 1920.0240
PRO 1930.0075
GLY 1940.0154
GLU 1950.0065
SER 1960.0036
PHE 1970.0042
THR 1980.0029
ALA 1990.0057
GLN 2000.0056
PRO 2010.0052
ALA 2020.0036
ASP 2030.0076
MET 2040.0107
GLN 2050.0113
ALA 2060.0137
GLY 2070.0091
ILE 2080.0101
LYS 2090.0050
GLY 2100.0065
PRO 2110.0091
GLY 2120.0046
PRO 2130.0060
GLY 2140.0082
GLY 2150.0075
SER 2160.0143
ILE 2170.0097
GLN 2180.0135
VAL 2190.0172
ILE 2200.0273
ASN 2210.0457
GLY 2220.0291
SER 2230.0200
THR 2240.0200
ILE 2250.0168
GLY 2260.0034
THR 2270.0126
GLY 2280.0183
SER 2290.0281
LYS 2300.0270
LYS 2310.0262
THR 2320.0314
ILE 2330.0273
LEU 2340.0282
ILE 2350.0438
TYR 2360.0431
SER 2370.0440
ILE 2380.0388
ILE 2390.0220
GLY 2400.0236
VAL 2410.0281
LYS 2420.0196
LYS 2430.0225
GLY 2440.0240
THR 2450.0179
LEU 2460.0267
ALA 2470.0143
TRP 2480.0119
ALA 2490.0173
ARG 2500.0185
THR 2510.0246
GLY 2520.0195
PHE 2530.0278
SER 2540.0289
PRO 2550.0391
ALA 2560.0355
LYS 2570.0332
LYS 2580.0281
LEU 2590.0340
ASN 2600.0464
ALA 2610.0767
GLY 2620.0402
VAL 2630.0294
VAL 2640.0163
ARG 2650.0315
VAL 2660.0267
PHE 2670.0229
PHE 2680.0301
LEU 2690.0317
ASN 2700.0401
GLN 2710.0207
LYS 2720.0170
LYS 2730.0228
ALA 2740.0220
LYS 2750.0156
ASP 2760.0211
VAL 2770.0246
LEU 2780.0181
ARG 2790.0178
LYS 2800.0255
THR 2810.0332
SER 2820.0215
ARG 2830.0158
PRO 2840.0159
MET 2850.0241
VAL 2860.0122
ASP 2870.0125
LEU 2880.0145
THR 2890.0138
PHE 2900.0091
GLY 2910.0190
GLY 2920.0290

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.