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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 95  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0922
GLU 270.0023
PRO 280.0023
CYS 290.0019
VAL 300.0014
GLU 310.0010
VAL 320.0006
VAL 330.0003
PRO 340.0005
ASN 350.0006
ILE 360.0007
THR 370.0009
TYR 380.0011
GLN 390.0013
CYS 400.0017
MET 410.0018
GLU 420.0020
LEU 430.0022
ASN 440.0027
PHE 450.0028
TYR 460.0033
LYS 470.0030
ILE 480.0025
PRO 490.0022
ASP 500.0023
ASN 510.0021
LEU 520.0014
PRO 530.0010
PHE 540.0011
SER 550.0009
THR 560.0010
LYS 570.0010
ASN 580.0011
LEU 590.0013
ASP 600.0014
LEU 610.0017
SER 620.0018
PHE 630.0020
ASN 640.0022
PRO 650.0027
LEU 660.0028
ARG 670.0028
HIS 680.0023
LEU 690.0018
GLY 700.0014
SER 710.0011
TYR 720.0013
SER 730.0014
PHE 740.0015
PHE 750.0013
SER 760.0014
PHE 770.0013
PRO 780.0014
GLU 790.0012
LEU 800.0013
GLN 810.0013
VAL 820.0009
LEU 830.0011
ASP 840.0012
LEU 850.0014
SER 860.0015
ARG 870.0019
CYS 880.0020
GLU 890.0022
ILE 900.0025
GLN 910.0028
THR 920.0021
ILE 930.0017
GLU 940.0014
ASP 950.0012
GLY 960.0010
ALA 970.0013
TYR 980.0014
GLN 990.0013
SER 1000.0012
LEU 1010.0014
SER 1020.0015
HIS 1030.0012
LEU 1040.0011
SER 1050.0008
THR 1060.0008
LEU 1070.0005
ILE 1080.0008
LEU 1090.0011
THR 1100.0014
GLY 1110.0017
ASN 1120.0018
PRO 1130.0021
ILE 1140.0021
GLN 1150.0024
SER 1160.0023
LEU 1170.0014
ALA 1180.0012
LEU 1190.0013
GLY 1200.0013
ALA 1210.0014
PHE 1220.0014
SER 1230.0014
GLY 1240.0014
LEU 1250.0014
SER 1260.0014
SER 1270.0008
LEU 1280.0008
GLN 1290.0008
LYS 1300.0008
LEU 1310.0009
VAL 1320.0008
ALA 1330.0010
VAL 1340.0014
GLU 1350.0017
THR 1360.0015
ASN 1370.0019
LEU 1380.0013
ALA 1390.0013
SER 1400.0011
LEU 1410.0014
GLU 1420.0013
ASN 1430.0014
PHE 1440.0012
PRO 1450.0012
ILE 1460.0012
GLY 1470.0024
HIS 1480.0023
LEU 1490.0018
LYS 1500.0021
THR 1510.0015
LEU 1520.0014
LYS 1530.0015
GLU 1540.0013
LEU 1550.0011
ASN 1560.0010
VAL 1570.0013
ALA 1580.0019
HIS 1590.0023
ASN 1600.0020
LEU 1610.0020
ILE 1620.0023
GLN 1630.0022
SER 1640.0019
PHE 1650.0019
LYS 1660.0022
LEU 1670.0026
PRO 1680.0027
GLU 1690.0030
TYR 1700.0028
PHE 1710.0027
SER 1720.0032
ASN 1730.0029
LEU 1740.0025
THR 1750.0027
ASN 1760.0023
LEU 1770.0021
GLU 1780.0024
HIS 1790.0021
LEU 1800.0017
ASP 1810.0017
LEU 1820.0021
SER 1830.0029
SER 1840.0033
ASN 1850.0028
LYS 1860.0028
ILE 1870.0028
GLN 1880.0027
SER 1890.0021
ILE 1900.0020
TYR 1910.0026
CYS 1920.0033
THR 1930.0036
ASP 1940.0029
LEU 1950.0030
ARG 1960.0037
VAL 1970.0035
LEU 1980.0035
HIS 1990.0041
GLN 2000.0042
MET 2010.0040
PRO 2020.0041
LEU 2030.0040
LEU 2040.0032
ASN 2050.0031
LEU 2060.0025
SER 2070.0027
LEU 2080.0021
ASP 2090.0025
LEU 2100.0023
SER 2110.0032
LEU 2120.0039
ASN 2130.0032
PRO 2140.0032
MET 2150.0024
ASN 2160.0022
PHE 2170.0018
ILE 2180.0017
GLN 2190.0024
PRO 2200.0030
GLY 2210.0035
ALA 2220.0030
PHE 2230.0029
LYS 2240.0040
GLU 2250.0044
ILE 2260.0033
ARG 2270.0028
LEU 2280.0024
HIS 2290.0027
LYS 2300.0025
LEU 2310.0021
THR 2320.0025
LEU 2330.0024
ARG 2340.0031
ASN 2350.0033
ASN 2360.0026
PHE 2370.0027
ASP 2380.0029
SER 2390.0024
LEU 2400.0020
ASN 2410.0014
VAL 2420.0016
MET 2430.0017
LYS 2440.0013
THR 2450.0010
CYS 2460.0012
ILE 2470.0018
GLN 2480.0020
GLY 2490.0016
LEU 2500.0019
ALA 2510.0027
GLY 2520.0033
LEU 2530.0029
GLU 2540.0029
VAL 2550.0027
HIS 2560.0027
ARG 2570.0023
LEU 2580.0018
VAL 2590.0020
LEU 2600.0020
GLY 2610.0027
GLU 2620.0037
PHE 2630.0040
ARG 2640.0037
ASN 2650.0040
GLU 2660.0039
GLY 2670.0035
ASN 2680.0031
LEU 2690.0026
GLU 2700.0022
LYS 2710.0019
PHE 2720.0017
ASP 2730.0015
LYS 2740.0017
SER 2750.0014
ALA 2760.0016
LEU 2770.0014
GLU 2780.0014
GLY 2790.0014
LEU 2800.0016
CYS 2810.0018
ASN 2820.0025
LEU 2830.0023
THR 2840.0024
ILE 2850.0023
GLU 2860.0024
GLU 2870.0021
PHE 2880.0016
ARG 2890.0017
LEU 2900.0021
ALA 2910.0025
TYR 2920.0034
LEU 2930.0031
ASP 2940.0026
TYR 2950.0025
TYR 2960.0024
LEU 2970.0032
ASP 2980.0032
GLY 2990.0030
ILE 3000.0028
ILE 3010.0029
ASP 3020.0021
LEU 3030.0022
PHE 3040.0020
ASN 3050.0020
CYS 3060.0022
LEU 3070.0020
THR 3080.0018
ASN 3090.0020
VAL 3100.0021
SER 3110.0020
SER 3120.0019
PHE 3130.0016
SER 3140.0016
LEU 3150.0020
VAL 3160.0025
SER 3170.0030
VAL 3180.0032
THR 3190.0031
ILE 3200.0034
GLU 3210.0034
ARG 3220.0036
VAL 3230.0030
LYS 3240.0028
ASP 3250.0029
PHE 3260.0023
SER 3270.0016
TYR 3280.0019
ASN 3290.0018
PHE 3300.0021
GLY 3310.0023
TRP 3320.0018
GLN 3330.0020
HIS 3340.0018
LEU 3350.0014
GLU 3360.0017
LEU 3370.0024
VAL 3380.0027
ASN 3390.0031
CYS 3400.0032
LYS 3410.0035
PHE 3420.0037
GLY 3430.0039
GLN 3440.0035
PHE 3450.0030
PRO 3460.0030
THR 3470.0016
LEU 3480.0013
LYS 3490.0012
LEU 3500.0018
LYS 3510.0021
SER 3520.0023
LEU 3530.0020
LYS 3540.0023
ARG 3550.0021
LEU 3560.0013
THR 3570.0019
PHE 3580.0020
THR 3590.0023
SER 3600.0030
ASN 3610.0034
LYS 3620.0036
GLY 3630.0040
GLY 3640.0042
ASN 3650.0039
ALA 3660.0043
PHE 3670.0022
SER 3680.0017
GLU 3690.0009
VAL 3700.0014
ASP 3710.0018
LEU 3720.0019
PRO 3730.0025
SER 3740.0029
LEU 3750.0024
GLU 3760.0027
PHE 3770.0024
LEU 3780.0015
ASP 3790.0015
LEU 3800.0015
SER 3810.0018
ARG 3820.0031
ASN 3830.0036
GLY 3840.0038
LEU 3850.0037
SER 3860.0039
PHE 3870.0022
LYS 3880.0018
GLY 3890.0013
CYS 3900.0012
CYS 3910.0018
SER 3920.0024
GLN 3930.0029
SER 3940.0026
ASP 3950.0014
PHE 3960.0018
GLY 3970.0027
THR 3980.0030
ILE 3990.0037
SER 4000.0037
LEU 4010.0027
LYS 4020.0023
TYR 4030.0016
LEU 4040.0009
ASP 4050.0009
LEU 4060.0012
SER 4070.0020
PHE 4080.0035
ASN 4090.0039
GLY 4100.0047
VAL 4110.0044
ILE 4120.0026
THR 4130.0026
MET 4140.0027
SER 4150.0029
SER 4160.0034
ASN 4170.0043
PHE 4180.0034
LEU 4190.0044
GLY 4200.0044
LEU 4210.0033
GLU 4220.0042
GLN 4230.0035
LEU 4240.0023
GLU 4250.0015
HIS 4260.0008
LEU 4270.0008
ASP 4280.0005
PHE 4290.0014
GLN 4300.0021
HIS 4310.0032
SER 4320.0039
ASN 4330.0045
LEU 4340.0035
LYS 4350.0040
GLN 4360.0045
MET 4370.0047
SER 4380.0059
GLU 4390.0058
PHE 4400.0057
SER 4410.0054
VAL 4420.0043
PHE 4430.0040
LEU 4440.0050
SER 4450.0046
LEU 4460.0037
ARG 4470.0044
ASN 4480.0031
LEU 4490.0026
ILE 4500.0022
TYR 4510.0023
LEU 4520.0023
ASP 4530.0017
ILE 4540.0012
SER 4550.0017
HIS 4560.0021
THR 4570.0030
HIS 4580.0036
THR 4590.0033
ARG 4600.0045
VAL 4610.0049
ALA 4620.0056
PHE 4630.0055
ASN 4640.0057
GLY 4650.0054
ILE 4660.0050
PHE 4670.0047
ASN 4680.0049
GLY 4690.0045
LEU 4700.0040
SER 4710.0042
SER 4720.0038
LEU 4730.0036
GLU 4740.0037
VAL 4750.0035
LEU 4760.0036
LYS 4770.0019
MET 4780.0018
ALA 4790.0021
GLY 4800.0020
ASN 4810.0017
SER 4820.0030
PHE 4830.0026
GLN 4840.0029
GLU 4850.0028
ASN 4860.0025
PHE 4870.0022
LEU 4880.0027
PRO 4890.0029
ASP 4900.0033
ILE 4910.0038
PHE 4920.0042
THR 4930.0044
GLU 4940.0044
LEU 4950.0044
ARG 4960.0046
ASN 4970.0046
LEU 4980.0042
THR 4990.0043
PHE 5000.0039
LEU 5010.0035
ASP 5020.0018
LEU 5030.0015
SER 5040.0011
GLN 5050.0004
CYS 5060.0008
GLN 5070.0020
LEU 5080.0017
GLU 5090.0017
GLN 5100.0015
LEU 5110.0014
SER 5120.0026
PRO 5130.0025
THR 5140.0028
ALA 5150.0031
PHE 5160.0033
ASN 5170.0037
SER 5180.0041
LEU 5190.0043
SER 5200.0042
SER 5210.0047
LEU 5220.0044
GLN 5230.0042
VAL 5240.0033
LEU 5250.0025
ASN 5260.0016
MET 5270.0013
SER 5280.0009
HIS 5290.0012
ASN 5300.0015
ASN 5310.0017
PHE 5320.0017
PHE 5330.0019
SER 5340.0019
LEU 5350.0019
ASP 5360.0018
THR 5370.0026
PHE 5380.0025
PRO 5390.0029
TYR 5400.0031
LYS 5410.0030
CYS 5420.0037
LEU 5430.0038
ASN 5440.0040
SER 5450.0043
LEU 5460.0041
GLN 5470.0040
VAL 5480.0032
LEU 5490.0027
ASP 5500.0021
TYR 5510.0018
SER 5520.0018
LEU 5530.0017
ASN 5540.0015
HIS 5550.0013
ILE 5560.0012
MET 5570.0015
THR 5580.0016
SER 5590.0016
LYS 5600.0017
LYS 5610.0017
GLN 5620.0027
GLU 5630.0024
LEU 5640.0027
GLN 5650.0034
HIS 5660.0032
PHE 5670.0032
PRO 5680.0039
SER 5690.0043
SER 5700.0047
LEU 5710.0041
ALA 5720.0043
PHE 5730.0033
LEU 5740.0026
ASN 5750.0022
LEU 5760.0016
THR 5770.0025
GLN 5780.0021
ASN 5790.0014
ASP 5800.0009
PHE 5810.0009
ALA 5820.0020
CYS 5830.0018
THR 5840.0033
CYS 5850.0050
GLU 5860.0057
HIS 5870.0034
GLN 5880.0037
SER 5890.0036
PHE 5900.0025
LEU 5910.0026
GLN 5920.0033
TRP 5930.0029
ILE 5940.0027
LYS 5950.0033
ASP 5960.0037
GLN 5970.0026
ARG 5980.0028
GLN 5990.0034
LEU 6000.0029
LEU 6010.0024
VAL 6020.0027
GLU 6030.0037
VAL 6040.0037
GLU 6050.0058
ARG 6060.0058
MET 6070.0020
GLU 6080.0017
CYS 6090.0014
ALA 6100.0013
THR 6110.0017
PRO 6120.0027
SER 6130.0060
ASP 6140.0071
LYS 6150.0045
GLN 6160.0031
GLY 6170.0024
MET 6180.0026
PRO 6190.0025
VAL 6200.0021
LEU 6210.0029
SER 6220.0040
LEU 6230.0030
ASN 6240.0036
ILE 6250.0044
THR 6260.0057
CYS 6270.0084
GLU 10.0055
ALA 20.0049
ALA 30.0038
ALA 40.0049
LYS 50.0050
MET 60.0032
GLN 70.0045
ARG 80.0046
LEU 90.0035
VAL 100.0043
LEU 110.0018
LEU 120.0020
LEU 130.0022
ALA 140.0034
ILE 150.0036
SER 160.0020
LEU 170.0036
LEU 180.0063
LEU 190.0048
TYR 200.0007
GLN 210.0051
ASP 220.0056
LEU 230.0034
PRO 240.0037
VAL 250.0039
ARG 260.0044
SER 270.0036
GLU 280.0049
PHE 290.0048
GLU 300.0036
LEU 310.0035
ASP 320.0041
ARG 330.0041
ILE 340.0037
CYS 350.0041
GLY 360.0037
TYR 370.0038
GLY 380.0036
THR 390.0038
ALA 400.0035
ARG 410.0034
CYS 420.0047
ARG 430.0062
LYS 440.0081
LYS 450.0083
CYS 460.0051
ARG 470.0047
SER 480.0050
GLN 490.0040
GLU 500.0041
TYR 510.0047
ARG 520.0043
ILE 530.0037
GLY 540.0035
ARG 550.0036
CYS 560.0051
PRO 570.0069
ASN 580.0083
THR 590.0065
TYR 600.0069
ALA 610.0045
CYS 620.0034
CYS 630.0036
LEU 640.0031
ARG 650.0032
LYS 660.0022
TRP 670.0017
ASP 680.0013
GLU 690.0012
SER 700.0007
LEU 710.0014
LEU 720.0012
ASN 730.0015
ARG 740.0020
THR 750.0023
LYS 760.0031
PRO 770.0054
GLU 780.0061
ALA 790.0084
ALA 800.0089
ALA 810.0081
LYS 820.0047
LYS 830.0108
GLU 840.0124
MET 850.0198
ASN 860.0204
LEU 870.0216
SER 880.0211
VAL 890.0217
GLY 900.0223
LEU 910.0227
GLY 920.0342
GLY 930.0376
GLY 940.0436
SER 950.0246
ASN 960.0147
LEU 970.0102
SER 980.0103
VAL 990.0180
GLY 1000.0168
LEU 1010.0298
GLY 1020.0194
GLU 1030.0114
ILE 1040.0259
GLY 1050.0336
GLY 1060.0178
GLY 1070.0075
SER 1080.0131
LYS 1090.0302
LEU 1100.0437
LEU 1110.0355
ASP 1120.0329
ILE 1130.0325
ASN 1140.0300
LEU 1150.0302
GLY 1160.0477
ARG 1170.0399
GLY 1180.0536
GLY 1190.0622
GLY 1200.0593
SER 1210.0303
MET 1220.0170
VAL 1230.0125
ASP 1240.0039
LEU 1250.0073
THR 1260.0093
PHE 1270.0037
GLY 1280.0087
GLY 1290.0099
VAL 1300.0128
GLY 1310.0212
GLY 1320.0196
GLY 1330.0159
SER 1340.0147
THR 1350.0111
PHE 1360.0115
THR 1370.0108
PHE 1380.0145
PHE 1390.0151
PRO 1400.0189
LEU 1410.0272
VAL 1420.0395
ILE 1430.0440
GLY 1440.0823
GLY 1450.0922
GLY 1460.0803
SER 1470.0859
ASP 1480.0871
ALA 1490.0697
MET 1500.0454
TYR 1510.0510
LEU 1520.0378
GLY 1530.0284
PHE 1540.0154
ALA 1550.0115
ALA 1560.0119
GLY 1570.0158
GLY 1580.0208
GLY 1590.0211
SER 1600.0232
ALA 1610.0164
GLY 1620.0176
GLY 1630.0143
GLU 1640.0123
ASN 1650.0128
HIS 1660.0189
VAL 1670.0219
ALA 1680.0214
PHE 1690.0228
GLY 1700.0242
PRO 1710.0144
GLY 1720.0183
PRO 1730.0163
GLY 1740.0048
VAL 1750.0211
ASP 1760.0238
LEU 1770.0209
THR 1780.0205
PHE 1790.0176
GLY 1800.0175
GLY 1810.0242
VAL 1820.0187
GLN 1830.0192
PHE 1840.0136
ALA 1850.0147
MET 1860.0119
VAL 1870.0183
ASN 1880.0184
ASN 1890.0210
GLY 1900.0302
PRO 1910.0276
GLY 1920.0249
PRO 1930.0141
GLY 1940.0168
GLU 1950.0217
SER 1960.0190
PHE 1970.0074
THR 1980.0053
ALA 1990.0137
GLN 2000.0205
PRO 2010.0067
ALA 2020.0079
ASP 2030.0168
MET 2040.0111
GLN 2050.0223
ALA 2060.0096
GLY 2070.0111
ILE 2080.0223
LYS 2090.0198
GLY 2100.0418
PRO 2110.0186
GLY 2120.0177
PRO 2130.0125
GLY 2140.0173
GLY 2150.0153
SER 2160.0280
ILE 2170.0238
GLN 2180.0148
VAL 2190.0106
ILE 2200.0053
ASN 2210.0124
GLY 2220.0155
SER 2230.0109
THR 2240.0112
ILE 2250.0149
GLY 2260.0195
THR 2270.0239
GLY 2280.0151
SER 2290.0189
LYS 2300.0173
LYS 2310.0203
THR 2320.0243
ILE 2330.0169
LEU 2340.0165
ILE 2350.0158
TYR 2360.0111
SER 2370.0112
ILE 2380.0124
ILE 2390.0145
GLY 2400.0156
VAL 2410.0144
LYS 2420.0119
LYS 2430.0106
GLY 2440.0097
THR 2450.0107
LEU 2460.0133
ALA 2470.0132
TRP 2480.0101
ALA 2490.0093
ARG 2500.0084
THR 2510.0259
GLY 2520.0285
PHE 2530.0214
SER 2540.0230
PRO 2550.0209
ALA 2560.0328
LYS 2570.0243
LYS 2580.0122
LEU 2590.0222
ASN 2600.0378
ALA 2610.0416
GLY 2620.0342
VAL 2630.0330
VAL 2640.0318
ARG 2650.0314
VAL 2660.0160
PHE 2670.0119
PHE 2680.0131
LEU 2690.0152
ASN 2700.0231
GLN 2710.0147
LYS 2720.0133
LYS 2730.0140
ALA 2740.0148
LYS 2750.0136
ASP 2760.0185
VAL 2770.0186
LEU 2780.0123
ARG 2790.0114
LYS 2800.0176
THR 2810.0269
SER 2820.0219
ARG 2830.0225
PRO 2840.0193
MET 2850.0154
VAL 2860.0158
ASP 2870.0118
LEU 2880.0066
THR 2890.0045
PHE 2900.0049
GLY 2910.0186
GLY 2920.0393

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.