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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 96  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0538
GLU 270.0105
PRO 280.0123
CYS 290.0089
VAL 300.0073
GLU 310.0037
VAL 320.0057
VAL 330.0068
PRO 340.0060
ASN 350.0066
ILE 360.0077
THR 370.0063
TYR 380.0054
GLN 390.0086
CYS 400.0101
MET 410.0137
GLU 420.0158
LEU 430.0145
ASN 440.0154
PHE 450.0131
TYR 460.0132
LYS 470.0125
ILE 480.0093
PRO 490.0074
ASP 500.0057
ASN 510.0064
LEU 520.0038
PRO 530.0035
PHE 540.0041
SER 550.0061
THR 560.0051
LYS 570.0066
ASN 580.0071
LEU 590.0067
ASP 600.0088
LEU 610.0100
SER 620.0121
PHE 630.0134
ASN 640.0129
PRO 650.0137
LEU 660.0127
ARG 670.0120
HIS 680.0105
LEU 690.0092
GLY 700.0081
SER 710.0079
TYR 720.0080
SER 730.0076
PHE 740.0067
PHE 750.0059
SER 760.0041
PHE 770.0047
PRO 780.0056
GLU 790.0060
LEU 800.0062
GLN 810.0075
VAL 820.0057
LEU 830.0059
ASP 840.0069
LEU 850.0082
SER 860.0096
ARG 870.0101
CYS 880.0102
GLU 890.0105
ILE 900.0108
GLN 910.0115
THR 920.0098
ILE 930.0091
GLU 940.0089
ASP 950.0093
GLY 960.0083
ALA 970.0083
TYR 980.0079
GLN 990.0083
SER 1000.0075
LEU 1010.0072
SER 1020.0071
HIS 1030.0061
LEU 1040.0057
SER 1050.0052
THR 1060.0047
LEU 1070.0037
ILE 1080.0042
LEU 1090.0052
THR 1100.0061
GLY 1110.0072
ASN 1120.0079
PRO 1130.0080
ILE 1140.0081
GLN 1150.0083
SER 1160.0084
LEU 1170.0073
ALA 1180.0074
LEU 1190.0064
GLY 1200.0072
ALA 1210.0072
PHE 1220.0060
SER 1230.0065
GLY 1240.0064
LEU 1250.0054
SER 1260.0054
SER 1270.0037
LEU 1280.0031
GLN 1290.0033
LYS 1300.0028
LEU 1310.0026
VAL 1320.0017
ALA 1330.0024
VAL 1340.0036
GLU 1350.0046
THR 1360.0040
ASN 1370.0078
LEU 1380.0072
ALA 1390.0077
SER 1400.0070
LEU 1410.0065
GLU 1420.0094
ASN 1430.0094
PHE 1440.0071
PRO 1450.0066
ILE 1460.0050
GLY 1470.0081
HIS 1480.0078
LEU 1490.0062
LYS 1500.0063
THR 1510.0049
LEU 1520.0057
LYS 1530.0056
GLU 1540.0040
LEU 1550.0026
ASN 1560.0012
VAL 1570.0023
ALA 1580.0034
HIS 1590.0060
ASN 1600.0063
LEU 1610.0079
ILE 1620.0097
GLN 1630.0099
SER 1640.0080
PHE 1650.0056
LYS 1660.0087
LEU 1670.0108
PRO 1680.0127
GLU 1690.0142
TYR 1700.0132
PHE 1710.0116
SER 1720.0138
ASN 1730.0133
LEU 1740.0108
THR 1750.0113
ASN 1760.0090
LEU 1770.0083
GLU 1780.0077
HIS 1790.0051
LEU 1800.0033
ASP 1810.0012
LEU 1820.0025
SER 1830.0045
SER 1840.0078
ASN 1850.0079
LYS 1860.0094
ILE 1870.0075
GLN 1880.0090
SER 1890.0062
ILE 1900.0034
TYR 1910.0038
CYS 1920.0076
THR 1930.0105
ASP 1940.0095
LEU 1950.0107
ARG 1960.0148
VAL 1970.0152
LEU 1980.0139
HIS 1990.0158
GLN 2000.0185
MET 2010.0183
PRO 2020.0191
LEU 2030.0197
LEU 2040.0151
ASN 2050.0123
LEU 2060.0079
SER 2070.0058
LEU 2080.0037
ASP 2090.0027
LEU 2100.0034
SER 2110.0055
LEU 2120.0077
ASN 2130.0073
PRO 2140.0099
MET 2150.0086
ASN 2160.0105
PHE 2170.0085
ILE 2180.0058
GLN 2190.0053
PRO 2200.0088
GLY 2210.0106
ALA 2220.0082
PHE 2230.0099
LYS 2240.0146
GLU 2250.0182
ILE 2260.0149
ARG 2270.0110
LEU 2280.0086
HIS 2290.0088
LYS 2300.0061
LEU 2310.0045
THR 2320.0047
LEU 2330.0057
ARG 2340.0061
ASN 2350.0078
ASN 2360.0079
PHE 2370.0106
ASP 2380.0121
SER 2390.0133
LEU 2400.0138
ASN 2410.0148
VAL 2420.0119
MET 2430.0112
LYS 2440.0123
THR 2450.0113
CYS 2460.0093
ILE 2470.0090
GLN 2480.0098
GLY 2490.0069
LEU 2500.0074
ALA 2510.0102
GLY 2520.0119
LEU 2530.0095
GLU 2540.0101
VAL 2550.0075
HIS 2560.0072
ARG 2570.0050
LEU 2580.0041
VAL 2590.0039
LEU 2600.0049
GLY 2610.0065
GLU 2620.0068
PHE 2630.0049
ARG 2640.0041
ASN 2650.0047
GLU 2660.0063
GLY 2670.0084
ASN 2680.0084
LEU 2690.0102
GLU 2700.0110
LYS 2710.0120
PHE 2720.0086
ASP 2730.0090
LYS 2740.0098
SER 2750.0107
ALA 2760.0106
LEU 2770.0068
GLU 2780.0078
GLY 2790.0064
LEU 2800.0057
CYS 2810.0069
ASN 2820.0082
LEU 2830.0066
THR 2840.0073
ILE 2850.0057
GLU 2860.0061
GLU 2870.0029
PHE 2880.0020
ARG 2890.0023
LEU 2900.0034
ALA 2910.0038
TYR 2920.0054
LEU 2930.0062
ASP 2940.0042
TYR 2950.0061
TYR 2960.0073
LEU 2970.0091
ASP 2980.0106
GLY 2990.0098
ILE 3000.0088
ILE 3010.0101
ASP 3020.0071
LEU 3030.0066
PHE 3040.0052
ASN 3050.0056
CYS 3060.0053
LEU 3070.0028
THR 3080.0030
ASN 3090.0028
VAL 3100.0023
SER 3110.0022
SER 3120.0021
PHE 3130.0013
SER 3140.0013
LEU 3150.0032
VAL 3160.0039
SER 3170.0051
VAL 3180.0063
THR 3190.0081
ILE 3200.0095
GLU 3210.0114
ARG 3220.0117
VAL 3230.0098
LYS 3240.0107
ASP 3250.0107
PHE 3260.0085
SER 3270.0075
TYR 3280.0085
ASN 3290.0079
PHE 3300.0073
GLY 3310.0073
TRP 3320.0047
GLN 3330.0047
HIS 3340.0031
LEU 3350.0015
GLU 3360.0008
LEU 3370.0037
VAL 3380.0038
ASN 3390.0058
CYS 3400.0067
LYS 3410.0086
PHE 3420.0101
GLY 3430.0120
GLN 3440.0104
PHE 3450.0081
PRO 3460.0082
THR 3470.0063
LEU 3480.0051
LYS 3490.0062
LEU 3500.0068
LYS 3510.0084
SER 3520.0077
LEU 3530.0059
LYS 3540.0068
ARG 3550.0053
LEU 3560.0030
THR 3570.0017
PHE 3580.0023
THR 3590.0028
SER 3600.0051
ASN 3610.0059
LYS 3620.0091
GLY 3630.0103
GLY 3640.0104
ASN 3650.0080
ALA 3660.0081
PHE 3670.0032
SER 3680.0039
GLU 3690.0041
VAL 3700.0051
ASP 3710.0064
LEU 3720.0060
PRO 3730.0077
SER 3740.0090
LEU 3750.0078
GLU 3760.0089
PHE 3770.0063
LEU 3780.0044
ASP 3790.0025
LEU 3800.0012
SER 3810.0015
ARG 3820.0045
ASN 3830.0052
GLY 3840.0055
LEU 3850.0051
SER 3860.0053
PHE 3870.0017
LYS 3880.0019
GLY 3890.0043
CYS 3900.0042
CYS 3910.0060
SER 3920.0070
GLN 3930.0082
SER 3940.0075
ASP 3950.0056
PHE 3960.0064
GLY 3970.0079
THR 3980.0088
ILE 3990.0106
SER 4000.0108
LEU 4010.0088
LYS 4020.0077
TYR 4030.0059
LEU 4040.0045
ASP 4050.0029
LEU 4060.0019
SER 4070.0027
PHE 4080.0041
ASN 4090.0048
GLY 4100.0055
VAL 4110.0045
ILE 4120.0021
THR 4130.0036
MET 4140.0053
SER 4150.0068
SER 4160.0081
ASN 4170.0088
PHE 4180.0085
LEU 4190.0096
GLY 4200.0099
LEU 4210.0091
GLU 4220.0098
GLN 4230.0092
LEU 4240.0076
GLU 4250.0067
HIS 4260.0053
LEU 4270.0046
ASP 4280.0033
PHE 4290.0020
GLN 4300.0014
HIS 4310.0016
SER 4320.0038
ASN 4330.0040
LEU 4340.0032
LYS 4350.0049
GLN 4360.0072
MET 4370.0056
SER 4380.0065
GLU 4390.0072
PHE 4400.0073
SER 4410.0069
VAL 4420.0074
PHE 4430.0075
LEU 4440.0087
SER 4450.0090
LEU 4460.0082
ARG 4470.0085
ASN 4480.0073
LEU 4490.0062
ILE 4500.0047
TYR 4510.0037
LEU 4520.0040
ASP 4530.0033
ILE 4540.0026
SER 4550.0023
HIS 4560.0016
THR 4570.0021
HIS 4580.0014
THR 4590.0015
ARG 4600.0021
VAL 4610.0028
ALA 4620.0064
PHE 4630.0059
ASN 4640.0056
GLY 4650.0053
ILE 4660.0055
PHE 4670.0066
ASN 4680.0076
GLY 4690.0072
LEU 4700.0058
SER 4710.0057
SER 4720.0050
LEU 4730.0040
GLU 4740.0031
VAL 4750.0024
LEU 4760.0029
LYS 4770.0037
MET 4780.0040
ALA 4790.0045
GLY 4800.0051
ASN 4810.0050
SER 4820.0088
PHE 4830.0082
GLN 4840.0102
GLU 4850.0124
ASN 4860.0106
PHE 4870.0100
LEU 4880.0076
PRO 4890.0087
ASP 4900.0080
ILE 4910.0070
PHE 4920.0067
THR 4930.0091
GLU 4940.0087
LEU 4950.0059
ARG 4960.0073
ASN 4970.0062
LEU 4980.0040
THR 4990.0046
PHE 5000.0032
LEU 5010.0016
ASP 5020.0041
LEU 5030.0046
SER 5040.0061
GLN 5050.0076
CYS 5060.0070
GLN 5070.0095
LEU 5080.0075
GLU 5090.0084
GLN 5100.0076
LEU 5110.0061
SER 5120.0100
PRO 5130.0094
THR 5140.0103
ALA 5150.0082
PHE 5160.0064
ASN 5170.0103
SER 5180.0106
LEU 5190.0079
SER 5200.0101
SER 5210.0090
LEU 5220.0062
GLN 5230.0073
VAL 5240.0053
LEU 5250.0022
ASN 5260.0044
MET 5270.0046
SER 5280.0064
HIS 5290.0079
ASN 5300.0070
ASN 5310.0074
PHE 5320.0050
PHE 5330.0048
SER 5340.0036
LEU 5350.0032
ASP 5360.0030
THR 5370.0029
PHE 5380.0057
PRO 5390.0063
TYR 5400.0050
LYS 5410.0071
CYS 5420.0111
LEU 5430.0086
ASN 5440.0115
SER 5450.0103
LEU 5460.0073
GLN 5470.0077
VAL 5480.0063
LEU 5490.0040
ASP 5500.0051
TYR 5510.0052
SER 5520.0066
LEU 5530.0069
ASN 5540.0061
HIS 5550.0056
ILE 5560.0048
MET 5570.0045
THR 5580.0048
SER 5590.0048
LYS 5600.0057
LYS 5610.0057
GLN 5620.0066
GLU 5630.0047
LEU 5640.0037
GLN 5650.0016
HIS 5660.0027
PHE 5670.0047
PRO 5680.0073
SER 5690.0099
SER 5700.0095
LEU 5710.0068
ALA 5720.0066
PHE 5730.0060
LEU 5740.0048
ASN 5750.0056
LEU 5760.0056
THR 5770.0059
GLN 5780.0051
ASN 5790.0052
ASP 5800.0049
PHE 5810.0048
ALA 5820.0095
CYS 5830.0051
THR 5840.0081
CYS 5850.0105
GLU 5860.0150
HIS 5870.0104
GLN 5880.0097
SER 5890.0113
PHE 5900.0089
LEU 5910.0068
GLN 5920.0085
TRP 5930.0081
ILE 5940.0059
LYS 5950.0064
ASP 5960.0075
GLN 5970.0056
ARG 5980.0044
GLN 5990.0042
LEU 6000.0046
LEU 6010.0037
VAL 6020.0067
GLU 6030.0059
VAL 6040.0054
GLU 6050.0051
ARG 6060.0037
MET 6070.0042
GLU 6080.0050
CYS 6090.0063
ALA 6100.0101
THR 6110.0127
PRO 6120.0164
SER 6130.0249
ASP 6140.0247
LYS 6150.0157
GLN 6160.0161
GLY 6170.0123
MET 6180.0103
PRO 6190.0073
VAL 6200.0044
LEU 6210.0082
SER 6220.0109
LEU 6230.0076
ASN 6240.0090
ILE 6250.0105
THR 6260.0120
CYS 6270.0133
GLU 10.0127
ALA 20.0082
ALA 30.0086
ALA 40.0119
LYS 50.0074
MET 60.0074
GLN 70.0097
ARG 80.0094
LEU 90.0078
VAL 100.0105
LEU 110.0033
LEU 120.0064
LEU 130.0073
ALA 140.0077
ILE 150.0070
SER 160.0040
LEU 170.0144
LEU 180.0187
LEU 190.0110
TYR 200.0051
GLN 210.0159
ASP 220.0174
LEU 230.0111
PRO 240.0135
VAL 250.0108
ARG 260.0245
SER 270.0171
GLU 280.0256
PHE 290.0235
GLU 300.0123
LEU 310.0122
ASP 320.0130
ARG 330.0101
ILE 340.0081
CYS 350.0086
GLY 360.0068
TYR 370.0076
GLY 380.0084
THR 390.0094
ALA 400.0075
ARG 410.0037
CYS 420.0087
ARG 430.0165
LYS 440.0243
LYS 450.0278
CYS 460.0196
ARG 470.0182
SER 480.0201
GLN 490.0144
GLU 500.0148
TYR 510.0195
ARG 520.0175
ILE 530.0186
GLY 540.0163
ARG 550.0103
CYS 560.0107
PRO 570.0222
ASN 580.0231
THR 590.0118
TYR 600.0132
ALA 610.0107
CYS 620.0062
CYS 630.0077
LEU 640.0087
ARG 650.0085
LYS 660.0107
TRP 670.0086
ASP 680.0058
GLU 690.0049
SER 700.0028
LEU 710.0046
LEU 720.0054
ASN 730.0062
ARG 740.0072
THR 750.0079
LYS 760.0141
PRO 770.0200
GLU 780.0197
ALA 790.0261
ALA 800.0296
ALA 810.0325
LYS 820.0261
LYS 830.0206
GLU 840.0153
MET 850.0086
ASN 860.0065
LEU 870.0039
SER 880.0036
VAL 890.0037
GLY 900.0032
LEU 910.0046
GLY 920.0060
GLY 930.0098
GLY 940.0109
SER 950.0064
ASN 960.0053
LEU 970.0061
SER 980.0067
VAL 990.0069
GLY 1000.0082
LEU 1010.0047
GLY 1020.0141
GLU 1030.0258
ILE 1040.0347
GLY 1050.0454
GLY 1060.0286
GLY 1070.0295
SER 1080.0332
LYS 1090.0242
LEU 1100.0282
LEU 1110.0141
ASP 1120.0093
ILE 1130.0102
ASN 1140.0077
LEU 1150.0137
GLY 1160.0180
ARG 1170.0243
GLY 1180.0223
GLY 1190.0290
GLY 1200.0164
SER 1210.0057
MET 1220.0062
VAL 1230.0067
ASP 1240.0075
LEU 1250.0084
THR 1260.0070
PHE 1270.0027
GLY 1280.0052
GLY 1290.0084
VAL 1300.0108
GLY 1310.0129
GLY 1320.0126
GLY 1330.0096
SER 1340.0104
THR 1350.0081
PHE 1360.0037
THR 1370.0042
PHE 1380.0043
PHE 1390.0052
PRO 1400.0057
LEU 1410.0091
VAL 1420.0129
ILE 1430.0134
GLY 1440.0206
GLY 1450.0215
GLY 1460.0538
SER 1470.0501
ASP 1480.0456
ALA 1490.0294
MET 1500.0135
TYR 1510.0157
LEU 1520.0104
GLY 1530.0088
PHE 1540.0047
ALA 1550.0055
ALA 1560.0096
GLY 1570.0150
GLY 1580.0195
GLY 1590.0192
SER 1600.0184
ALA 1610.0110
GLY 1620.0102
GLY 1630.0070
GLU 1640.0060
ASN 1650.0055
HIS 1660.0079
VAL 1670.0085
ALA 1680.0096
PHE 1690.0103
GLY 1700.0115
PRO 1710.0082
GLY 1720.0132
PRO 1730.0153
GLY 1740.0077
VAL 1750.0051
ASP 1760.0055
LEU 1770.0064
THR 1780.0070
PHE 1790.0085
GLY 1800.0096
GLY 1810.0129
VAL 1820.0104
GLN 1830.0068
PHE 1840.0055
ALA 1850.0043
MET 1860.0079
VAL 1870.0085
ASN 1880.0053
ASN 1890.0071
GLY 1900.0047
PRO 1910.0115
GLY 1920.0123
PRO 1930.0103
GLY 1940.0091
GLU 1950.0086
SER 1960.0075
PHE 1970.0031
THR 1980.0051
ALA 1990.0081
GLN 2000.0078
PRO 2010.0026
ALA 2020.0031
ASP 2030.0062
MET 2040.0066
GLN 2050.0101
ALA 2060.0093
GLY 2070.0074
ILE 2080.0105
LYS 2090.0074
GLY 2100.0131
PRO 2110.0120
GLY 2120.0159
PRO 2130.0131
GLY 2140.0223
GLY 2150.0199
SER 2160.0122
ILE 2170.0118
GLN 2180.0119
VAL 2190.0122
ILE 2200.0130
ASN 2210.0271
GLY 2220.0292
SER 2230.0176
THR 2240.0059
ILE 2250.0285
GLY 2260.0320
THR 2270.0290
GLY 2280.0204
SER 2290.0199
LYS 2300.0141
LYS 2310.0355
THR 2320.0401
ILE 2330.0269
LEU 2340.0309
ILE 2350.0227
TYR 2360.0259
SER 2370.0293
ILE 2380.0271
ILE 2390.0343
GLY 2400.0360
VAL 2410.0295
LYS 2420.0232
LYS 2430.0199
GLY 2440.0198
THR 2450.0227
LEU 2460.0348
ALA 2470.0415
TRP 2480.0302
ALA 2490.0346
ARG 2500.0221
THR 2510.0305
GLY 2520.0276
PHE 2530.0278
SER 2540.0252
PRO 2550.0272
ALA 2560.0377
LYS 2570.0303
LYS 2580.0151
LEU 2590.0100
ASN 2600.0144
ALA 2610.0266
GLY 2620.0222
VAL 2630.0103
VAL 2640.0243
ARG 2650.0254
VAL 2660.0231
PHE 2670.0189
PHE 2680.0198
LEU 2690.0161
ASN 2700.0130
GLN 2710.0039
LYS 2720.0050
LYS 2730.0090
ALA 2740.0074
LYS 2750.0086
ASP 2760.0108
VAL 2770.0105
LEU 2780.0073
ARG 2790.0082
LYS 2800.0113
THR 2810.0097
SER 2820.0096
ARG 2830.0109
PRO 2840.0114
MET 2850.0126
VAL 2860.0141
ASP 2870.0104
LEU 2880.0115
THR 2890.0102
PHE 2900.0072
GLY 2910.0186
GLY 2920.0360

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.