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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 97  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0847
GLU 270.0068
PRO 280.0068
CYS 290.0051
VAL 300.0066
GLU 310.0062
VAL 320.0072
VAL 330.0056
PRO 340.0046
ASN 350.0021
ILE 360.0019
THR 370.0029
TYR 380.0023
GLN 390.0032
CYS 400.0018
MET 410.0030
GLU 420.0034
LEU 430.0027
ASN 440.0026
PHE 450.0013
TYR 460.0016
LYS 470.0016
ILE 480.0020
PRO 490.0014
ASP 500.0042
ASN 510.0052
LEU 520.0029
PRO 530.0028
PHE 540.0037
SER 550.0028
THR 560.0016
LYS 570.0031
ASN 580.0030
LEU 590.0025
ASP 600.0028
LEU 610.0023
SER 620.0027
PHE 630.0031
ASN 640.0029
PRO 650.0032
LEU 660.0030
ARG 670.0034
HIS 680.0035
LEU 690.0031
GLY 700.0034
SER 710.0032
TYR 720.0026
SER 730.0025
PHE 740.0026
PHE 750.0028
SER 760.0034
PHE 770.0033
PRO 780.0042
GLU 790.0041
LEU 800.0036
GLN 810.0041
VAL 820.0033
LEU 830.0030
ASP 840.0029
LEU 850.0026
SER 860.0027
ARG 870.0023
CYS 880.0026
GLU 890.0028
ILE 900.0029
GLN 910.0034
THR 920.0033
ILE 930.0028
GLU 940.0032
ASP 950.0032
GLY 960.0025
ALA 970.0025
TYR 980.0025
GLN 990.0025
SER 1000.0028
LEU 1010.0030
SER 1020.0026
HIS 1030.0031
LEU 1040.0028
SER 1050.0032
THR 1060.0030
LEU 1070.0018
ILE 1080.0019
LEU 1090.0015
THR 1100.0019
GLY 1110.0017
ASN 1120.0017
PRO 1130.0020
ILE 1140.0025
GLN 1150.0032
SER 1160.0037
LEU 1170.0021
ALA 1180.0025
LEU 1190.0028
GLY 1200.0027
ALA 1210.0022
PHE 1220.0017
SER 1230.0017
GLY 1240.0017
LEU 1250.0018
SER 1260.0018
SER 1270.0014
LEU 1280.0015
GLN 1290.0024
LYS 1300.0025
LEU 1310.0019
VAL 1320.0019
ALA 1330.0021
VAL 1340.0027
GLU 1350.0029
THR 1360.0025
ASN 1370.0042
LEU 1380.0040
ALA 1390.0042
SER 1400.0039
LEU 1410.0036
GLU 1420.0040
ASN 1430.0040
PHE 1440.0034
PRO 1450.0030
ILE 1460.0026
GLY 1470.0029
HIS 1480.0021
LEU 1490.0019
LYS 1500.0021
THR 1510.0018
LEU 1520.0026
LYS 1530.0030
GLU 1540.0030
LEU 1550.0028
ASN 1560.0028
VAL 1570.0029
ALA 1580.0034
HIS 1590.0041
ASN 1600.0042
LEU 1610.0047
ILE 1620.0037
GLN 1630.0034
SER 1640.0030
PHE 1650.0026
LYS 1660.0029
LEU 1670.0032
PRO 1680.0035
GLU 1690.0035
TYR 1700.0035
PHE 1710.0031
SER 1720.0036
ASN 1730.0030
LEU 1740.0028
THR 1750.0024
ASN 1760.0020
LEU 1770.0026
GLU 1780.0025
HIS 1790.0024
LEU 1800.0025
ASP 1810.0026
LEU 1820.0019
SER 1830.0023
SER 1840.0031
ASN 1850.0030
LYS 1860.0031
ILE 1870.0029
GLN 1880.0029
SER 1890.0028
ILE 1900.0029
TYR 1910.0029
CYS 1920.0032
THR 1930.0034
ASP 1940.0032
LEU 1950.0030
ARG 1960.0035
VAL 1970.0033
LEU 1980.0029
HIS 1990.0032
GLN 2000.0035
MET 2010.0031
PRO 2020.0028
LEU 2030.0027
LEU 2040.0021
ASN 2050.0014
LEU 2060.0011
SER 2070.0006
LEU 2080.0008
ASP 2090.0017
LEU 2100.0020
SER 2110.0029
LEU 2120.0035
ASN 2130.0035
PRO 2140.0037
MET 2150.0035
ASN 2160.0036
PHE 2170.0041
ILE 2180.0038
GLN 2190.0035
PRO 2200.0039
GLY 2210.0038
ALA 2220.0030
PHE 2230.0032
LYS 2240.0036
GLU 2250.0037
ILE 2260.0032
ARG 2270.0026
LEU 2280.0024
HIS 2290.0025
LYS 2300.0023
LEU 2310.0022
THR 2320.0032
LEU 2330.0036
ARG 2340.0037
ASN 2350.0043
ASN 2360.0050
PHE 2370.0055
ASP 2380.0061
SER 2390.0057
LEU 2400.0049
ASN 2410.0056
VAL 2420.0057
MET 2430.0049
LYS 2440.0047
THR 2450.0053
CYS 2460.0051
ILE 2470.0043
GLN 2480.0044
GLY 2490.0044
LEU 2500.0040
ALA 2510.0037
GLY 2520.0028
LEU 2530.0028
GLU 2540.0029
VAL 2550.0029
HIS 2560.0030
ARG 2570.0025
LEU 2580.0025
VAL 2590.0026
LEU 2600.0026
GLY 2610.0026
GLU 2620.0034
PHE 2630.0048
ARG 2640.0052
ASN 2650.0067
GLU 2660.0064
GLY 2670.0064
ASN 2680.0049
LEU 2690.0041
GLU 2700.0037
LYS 2710.0028
PHE 2720.0011
ASP 2730.0010
LYS 2740.0015
SER 2750.0023
ALA 2760.0020
LEU 2770.0016
GLU 2780.0019
GLY 2790.0027
LEU 2800.0021
CYS 2810.0018
ASN 2820.0025
LEU 2830.0025
THR 2840.0022
ILE 2850.0023
GLU 2860.0023
GLU 2870.0019
PHE 2880.0016
ARG 2890.0021
LEU 2900.0018
ALA 2910.0024
TYR 2920.0032
LEU 2930.0025
ASP 2940.0034
TYR 2950.0022
TYR 2960.0032
LEU 2970.0046
ASP 2980.0053
GLY 2990.0048
ILE 3000.0038
ILE 3010.0041
ASP 3020.0025
LEU 3030.0019
PHE 3040.0015
ASN 3050.0016
CYS 3060.0009
LEU 3070.0010
THR 3080.0012
ASN 3090.0008
VAL 3100.0010
SER 3110.0013
SER 3120.0016
PHE 3130.0018
SER 3140.0023
LEU 3150.0027
VAL 3160.0032
SER 3170.0045
VAL 3180.0043
THR 3190.0051
ILE 3200.0050
GLU 3210.0060
ARG 3220.0056
VAL 3230.0046
LYS 3240.0047
ASP 3250.0045
PHE 3260.0035
SER 3270.0037
TYR 3280.0037
ASN 3290.0030
PHE 3300.0024
GLY 3310.0018
TRP 3320.0014
GLN 3330.0012
HIS 3340.0013
LEU 3350.0016
GLU 3360.0020
LEU 3370.0025
VAL 3380.0033
ASN 3390.0043
CYS 3400.0042
LYS 3410.0048
PHE 3420.0046
GLY 3430.0053
GLN 3440.0041
PHE 3450.0028
PRO 3460.0027
THR 3470.0026
LEU 3480.0020
LYS 3490.0023
LEU 3500.0020
LYS 3510.0025
SER 3520.0020
LEU 3530.0013
LYS 3540.0015
ARG 3550.0013
LEU 3560.0012
THR 3570.0014
PHE 3580.0013
THR 3590.0025
SER 3600.0032
ASN 3610.0026
LYS 3620.0042
GLY 3630.0039
GLY 3640.0032
ASN 3650.0021
ALA 3660.0019
PHE 3670.0018
SER 3680.0011
GLU 3690.0016
VAL 3700.0012
ASP 3710.0018
LEU 3720.0020
PRO 3730.0029
SER 3740.0025
LEU 3750.0021
GLU 3760.0026
PHE 3770.0027
LEU 3780.0028
ASP 3790.0029
LEU 3800.0029
SER 3810.0035
ARG 3820.0035
ASN 3830.0033
GLY 3840.0035
LEU 3850.0033
SER 3860.0033
PHE 3870.0045
LYS 3880.0046
GLY 3890.0043
CYS 3900.0040
CYS 3910.0037
SER 3920.0037
GLN 3930.0034
SER 3940.0032
ASP 3950.0030
PHE 3960.0028
GLY 3970.0032
THR 3980.0034
ILE 3990.0043
SER 4000.0039
LEU 4010.0037
LYS 4020.0039
TYR 4030.0039
LEU 4040.0039
ASP 4050.0040
LEU 4060.0040
SER 4070.0043
PHE 4080.0044
ASN 4090.0048
GLY 4100.0048
VAL 4110.0047
ILE 4120.0045
THR 4130.0046
MET 4140.0039
SER 4150.0042
SER 4160.0035
ASN 4170.0034
PHE 4180.0034
LEU 4190.0034
GLY 4200.0037
LEU 4210.0037
GLU 4220.0034
GLN 4230.0035
LEU 4240.0035
GLU 4250.0035
HIS 4260.0036
LEU 4270.0029
ASP 4280.0033
PHE 4290.0034
GLN 4300.0035
HIS 4310.0039
SER 4320.0041
ASN 4330.0040
LEU 4340.0030
LYS 4350.0037
GLN 4360.0038
MET 4370.0025
SER 4380.0029
GLU 4390.0039
PHE 4400.0037
SER 4410.0028
VAL 4420.0027
PHE 4430.0024
LEU 4440.0025
SER 4450.0026
LEU 4460.0024
ARG 4470.0020
ASN 4480.0021
LEU 4490.0022
ILE 4500.0023
TYR 4510.0024
LEU 4520.0014
ASP 4530.0021
ILE 4540.0017
SER 4550.0025
HIS 4560.0027
THR 4570.0029
HIS 4580.0018
THR 4590.0015
ARG 4600.0008
VAL 4610.0014
ALA 4620.0022
PHE 4630.0026
ASN 4640.0030
GLY 4650.0029
ILE 4660.0021
PHE 4670.0019
ASN 4680.0023
GLY 4690.0023
LEU 4700.0018
SER 4710.0019
SER 4720.0014
LEU 4730.0015
GLU 4740.0018
VAL 4750.0020
LEU 4760.0019
LYS 4770.0023
MET 4780.0021
ALA 4790.0028
GLY 4800.0029
ASN 4810.0022
SER 4820.0032
PHE 4830.0029
GLN 4840.0031
GLU 4850.0038
ASN 4860.0037
PHE 4870.0035
LEU 4880.0031
PRO 4890.0029
ASP 4900.0027
ILE 4910.0027
PHE 4920.0024
THR 4930.0027
GLU 4940.0026
LEU 4950.0024
ARG 4960.0026
ASN 4970.0023
LEU 4980.0022
THR 4990.0022
PHE 5000.0023
LEU 5010.0023
ASP 5020.0025
LEU 5030.0026
SER 5040.0032
GLN 5050.0036
CYS 5060.0031
GLN 5070.0041
LEU 5080.0035
GLU 5090.0036
GLN 5100.0033
LEU 5110.0028
SER 5120.0026
PRO 5130.0024
THR 5140.0021
ALA 5150.0021
PHE 5160.0020
ASN 5170.0018
SER 5180.0020
LEU 5190.0021
SER 5200.0023
SER 5210.0027
LEU 5220.0026
GLN 5230.0028
VAL 5240.0024
LEU 5250.0017
ASN 5260.0019
MET 5270.0015
SER 5280.0023
HIS 5290.0029
ASN 5300.0026
ASN 5310.0029
PHE 5320.0013
PHE 5330.0013
SER 5340.0012
LEU 5350.0012
ASP 5360.0014
THR 5370.0019
PHE 5380.0020
PRO 5390.0017
TYR 5400.0022
LYS 5410.0027
CYS 5420.0024
LEU 5430.0025
ASN 5440.0033
SER 5450.0036
LEU 5460.0031
GLN 5470.0038
VAL 5480.0031
LEU 5490.0022
ASP 5500.0018
TYR 5510.0010
SER 5520.0016
LEU 5530.0017
ASN 5540.0011
HIS 5550.0013
ILE 5560.0009
MET 5570.0011
THR 5580.0014
SER 5590.0016
LYS 5600.0014
LYS 5610.0016
GLN 5620.0027
GLU 5630.0028
LEU 5640.0027
GLN 5650.0032
HIS 5660.0031
PHE 5670.0032
PRO 5680.0038
SER 5690.0044
SER 5700.0045
LEU 5710.0038
ALA 5720.0040
PHE 5730.0032
LEU 5740.0026
ASN 5750.0021
LEU 5760.0015
THR 5770.0022
GLN 5780.0020
ASN 5790.0018
ASP 5800.0015
PHE 5810.0013
ALA 5820.0051
CYS 5830.0035
THR 5840.0047
CYS 5850.0051
GLU 5860.0065
HIS 5870.0039
GLN 5880.0031
SER 5890.0033
PHE 5900.0021
LEU 5910.0013
GLN 5920.0025
TRP 5930.0024
ILE 5940.0014
LYS 5950.0017
ASP 5960.0022
GLN 5970.0028
ARG 5980.0022
GLN 5990.0024
LEU 6000.0024
LEU 6010.0015
VAL 6020.0032
GLU 6030.0020
VAL 6040.0034
GLU 6050.0050
ARG 6060.0046
MET 6070.0033
GLU 6080.0041
CYS 6090.0038
ALA 6100.0058
THR 6110.0066
PRO 6120.0089
SER 6130.0107
ASP 6140.0094
LYS 6150.0065
GLN 6160.0077
GLY 6170.0068
MET 6180.0050
PRO 6190.0043
VAL 6200.0022
LEU 6210.0027
SER 6220.0037
LEU 6230.0016
ASN 6240.0029
ILE 6250.0042
THR 6260.0060
CYS 6270.0073
GLU 10.0049
ALA 20.0039
ALA 30.0021
ALA 40.0028
LYS 50.0024
MET 60.0018
GLN 70.0036
ARG 80.0040
LEU 90.0032
VAL 100.0047
LEU 110.0016
LEU 120.0031
LEU 130.0023
ALA 140.0021
ILE 150.0030
SER 160.0013
LEU 170.0046
LEU 180.0078
LEU 190.0058
TYR 200.0019
GLN 210.0062
ASP 220.0070
LEU 230.0039
PRO 240.0040
VAL 250.0040
ARG 260.0045
SER 270.0034
GLU 280.0049
PHE 290.0043
GLU 300.0026
LEU 310.0035
ASP 320.0039
ARG 330.0028
ILE 340.0026
CYS 350.0032
GLY 360.0029
TYR 370.0038
GLY 380.0028
THR 390.0023
ALA 400.0019
ARG 410.0022
CYS 420.0040
ARG 430.0068
LYS 440.0096
LYS 450.0106
CYS 460.0072
ARG 470.0068
SER 480.0069
GLN 490.0055
GLU 500.0056
TYR 510.0064
ARG 520.0053
ILE 530.0040
GLY 540.0029
ARG 550.0019
CYS 560.0035
PRO 570.0067
ASN 580.0080
THR 590.0049
TYR 600.0062
ALA 610.0048
CYS 620.0034
CYS 630.0039
LEU 640.0033
ARG 650.0040
LYS 660.0063
TRP 670.0066
ASP 680.0050
GLU 690.0038
SER 700.0034
LEU 710.0044
LEU 720.0045
ASN 730.0030
ARG 740.0039
THR 750.0050
LYS 760.0054
PRO 770.0059
GLU 780.0049
ALA 790.0061
ALA 800.0078
ALA 810.0156
LYS 820.0148
LYS 830.0124
GLU 840.0120
MET 850.0116
ASN 860.0098
LEU 870.0084
SER 880.0057
VAL 890.0058
GLY 900.0055
LEU 910.0117
GLY 920.0245
GLY 930.0327
GLY 940.0263
SER 950.0173
ASN 960.0089
LEU 970.0090
SER 980.0064
VAL 990.0076
GLY 1000.0068
LEU 1010.0133
GLY 1020.0129
GLU 1030.0121
ILE 1040.0121
GLY 1050.0129
GLY 1060.0249
GLY 1070.0148
SER 1080.0065
LYS 1090.0094
LEU 1100.0183
LEU 1110.0151
ASP 1120.0191
ILE 1130.0172
ASN 1140.0279
LEU 1150.0282
GLY 1160.0304
ARG 1170.0016
GLY 1180.0180
GLY 1190.0100
GLY 1200.0034
SER 1210.0103
MET 1220.0084
VAL 1230.0083
ASP 1240.0083
LEU 1250.0112
THR 1260.0154
PHE 1270.0114
GLY 1280.0143
GLY 1290.0147
VAL 1300.0142
GLY 1310.0290
GLY 1320.0234
GLY 1330.0119
SER 1340.0102
THR 1350.0051
PHE 1360.0054
THR 1370.0083
PHE 1380.0108
PHE 1390.0140
PRO 1400.0167
LEU 1410.0238
VAL 1420.0324
ILE 1430.0165
GLY 1440.0243
GLY 1450.0181
GLY 1460.0705
SER 1470.0603
ASP 1480.0553
ALA 1490.0305
MET 1500.0217
TYR 1510.0091
LEU 1520.0076
GLY 1530.0055
PHE 1540.0074
ALA 1550.0075
ALA 1560.0067
GLY 1570.0200
GLY 1580.0295
GLY 1590.0243
SER 1600.0157
ALA 1610.0091
GLY 1620.0118
GLY 1630.0144
GLU 1640.0150
ASN 1650.0151
HIS 1660.0111
VAL 1670.0110
ALA 1680.0094
PHE 1690.0093
GLY 1700.0084
PRO 1710.0151
GLY 1720.0201
PRO 1730.0268
GLY 1740.0152
VAL 1750.0090
ASP 1760.0077
LEU 1770.0105
THR 1780.0113
PHE 1790.0146
GLY 1800.0162
GLY 1810.0152
VAL 1820.0128
GLN 1830.0081
PHE 1840.0103
ALA 1850.0098
MET 1860.0066
VAL 1870.0110
ASN 1880.0150
ASN 1890.0244
GLY 1900.0286
PRO 1910.0307
GLY 1920.0302
PRO 1930.0163
GLY 1940.0153
GLU 1950.0171
SER 1960.0169
PHE 1970.0096
THR 1980.0052
ALA 1990.0114
GLN 2000.0141
PRO 2010.0053
ALA 2020.0056
ASP 2030.0122
MET 2040.0121
GLN 2050.0190
ALA 2060.0050
GLY 2070.0046
ILE 2080.0120
LYS 2090.0104
GLY 2100.0242
PRO 2110.0095
GLY 2120.0257
PRO 2130.0426
GLY 2140.0445
GLY 2150.0427
SER 2160.0502
ILE 2170.0461
GLN 2180.0517
VAL 2190.0610
ILE 2200.0728
ASN 2210.0847
GLY 2220.0571
SER 2230.0729
THR 2240.0560
ILE 2250.0366
GLY 2260.0718
THR 2270.0696
GLY 2280.0458
SER 2290.0436
LYS 2300.0316
LYS 2310.0269
THR 2320.0167
ILE 2330.0237
LEU 2340.0205
ILE 2350.0250
TYR 2360.0309
SER 2370.0400
ILE 2380.0393
ILE 2390.0359
GLY 2400.0383
VAL 2410.0208
LYS 2420.0132
LYS 2430.0127
GLY 2440.0145
THR 2450.0114
LEU 2460.0145
ALA 2470.0107
TRP 2480.0108
ALA 2490.0194
ARG 2500.0211
THR 2510.0375
GLY 2520.0270
PHE 2530.0184
SER 2540.0121
PRO 2550.0150
ALA 2560.0221
LYS 2570.0140
LYS 2580.0212
LEU 2590.0249
ASN 2600.0296
ALA 2610.0144
GLY 2620.0125
VAL 2630.0196
VAL 2640.0338
ARG 2650.0208
VAL 2660.0187
PHE 2670.0189
PHE 2680.0204
LEU 2690.0196
ASN 2700.0216
GLN 2710.0136
LYS 2720.0112
LYS 2730.0177
ALA 2740.0145
LYS 2750.0095
ASP 2760.0162
VAL 2770.0178
LEU 2780.0130
ARG 2790.0107
LYS 2800.0159
THR 2810.0134
SER 2820.0130
ARG 2830.0142
PRO 2840.0178
MET 2850.0257
VAL 2860.0226
ASP 2870.0166
LEU 2880.0186
THR 2890.0162
PHE 2900.0108
GLY 2910.0300
GLY 2920.0593

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.