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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 98  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0724
GLU 270.0233
PRO 280.0232
CYS 290.0151
VAL 300.0157
GLU 310.0124
VAL 320.0136
VAL 330.0091
PRO 340.0040
ASN 350.0058
ILE 360.0073
THR 370.0041
TYR 380.0006
GLN 390.0038
CYS 400.0039
MET 410.0039
GLU 420.0050
LEU 430.0073
ASN 440.0066
PHE 450.0086
TYR 460.0113
LYS 470.0120
ILE 480.0117
PRO 490.0123
ASP 500.0208
ASN 510.0216
LEU 520.0129
PRO 530.0129
PHE 540.0169
SER 550.0144
THR 560.0097
LYS 570.0112
ASN 580.0092
LEU 590.0072
ASP 600.0055
LEU 610.0044
SER 620.0062
PHE 630.0054
ASN 640.0051
PRO 650.0062
LEU 660.0082
ARG 670.0096
HIS 680.0080
LEU 690.0071
GLY 700.0077
SER 710.0074
TYR 720.0042
SER 730.0062
PHE 740.0081
PHE 750.0088
SER 760.0133
PHE 770.0117
PRO 780.0138
GLU 790.0133
LEU 800.0112
GLN 810.0114
VAL 820.0075
LEU 830.0073
ASP 840.0070
LEU 850.0069
SER 860.0068
ARG 870.0097
CYS 880.0098
GLU 890.0092
ILE 900.0083
GLN 910.0075
THR 920.0060
ILE 930.0047
GLU 940.0062
ASP 950.0065
GLY 960.0056
ALA 970.0041
TYR 980.0033
GLN 990.0026
SER 1000.0041
LEU 1010.0053
SER 1020.0037
HIS 1030.0056
LEU 1040.0037
SER 1050.0049
THR 1060.0036
LEU 1070.0024
ILE 1080.0035
LEU 1090.0043
THR 1100.0053
GLY 1110.0067
ASN 1120.0066
PRO 1130.0065
ILE 1140.0046
GLN 1150.0046
SER 1160.0048
LEU 1170.0029
ALA 1180.0059
LEU 1190.0076
GLY 1200.0072
ALA 1210.0039
PHE 1220.0030
SER 1230.0043
GLY 1240.0035
LEU 1250.0027
SER 1260.0042
SER 1270.0035
LEU 1280.0039
GLN 1290.0043
LYS 1300.0045
LEU 1310.0047
VAL 1320.0027
ALA 1330.0021
VAL 1340.0044
GLU 1350.0051
THR 1360.0025
ASN 1370.0033
LEU 1380.0037
ALA 1390.0051
SER 1400.0071
LEU 1410.0089
GLU 1420.0089
ASN 1430.0068
PHE 1440.0071
PRO 1450.0081
ILE 1460.0094
GLY 1470.0133
HIS 1480.0123
LEU 1490.0093
LYS 1500.0122
THR 1510.0091
LEU 1520.0082
LYS 1530.0086
GLU 1540.0081
LEU 1550.0078
ASN 1560.0076
VAL 1570.0062
ALA 1580.0073
HIS 1590.0069
ASN 1600.0052
LEU 1610.0048
ILE 1620.0074
GLN 1630.0082
SER 1640.0096
PHE 1650.0114
LYS 1660.0115
LEU 1670.0138
PRO 1680.0132
GLU 1690.0139
TYR 1700.0141
PHE 1710.0150
SER 1720.0168
ASN 1730.0153
LEU 1740.0136
THR 1750.0145
ASN 1760.0126
LEU 1770.0102
GLU 1780.0110
HIS 1790.0101
LEU 1800.0091
ASP 1810.0087
LEU 1820.0079
SER 1830.0088
SER 1840.0091
ASN 1850.0082
LYS 1860.0078
ILE 1870.0123
GLN 1880.0121
SER 1890.0118
ILE 1900.0119
TYR 1910.0127
CYS 1920.0126
THR 1930.0124
ASP 1940.0133
LEU 1950.0131
ARG 1960.0123
VAL 1970.0139
LEU 1980.0143
HIS 1990.0135
GLN 2000.0134
MET 2010.0142
PRO 2020.0130
LEU 2030.0117
LEU 2040.0103
ASN 2050.0090
LEU 2060.0086
SER 2070.0082
LEU 2080.0069
ASP 2090.0084
LEU 2100.0083
SER 2110.0108
LEU 2120.0129
ASN 2130.0122
PRO 2140.0122
MET 2150.0103
ASN 2160.0103
PHE 2170.0122
ILE 2180.0112
GLN 2190.0120
PRO 2200.0109
GLY 2210.0107
ALA 2220.0106
PHE 2230.0091
LYS 2240.0095
GLU 2250.0090
ILE 2260.0082
ARG 2270.0044
LEU 2280.0039
HIS 2290.0039
LYS 2300.0039
LEU 2310.0039
THR 2320.0080
LEU 2330.0078
ARG 2340.0095
ASN 2350.0105
ASN 2360.0103
PHE 2370.0112
ASP 2380.0131
SER 2390.0107
LEU 2400.0075
ASN 2410.0088
VAL 2420.0103
MET 2430.0073
LYS 2440.0059
THR 2450.0090
CYS 2460.0088
ILE 2470.0051
GLN 2480.0073
GLY 2490.0088
LEU 2500.0057
ALA 2510.0061
GLY 2520.0058
LEU 2530.0045
GLU 2540.0032
VAL 2550.0027
HIS 2560.0022
ARG 2570.0022
LEU 2580.0018
VAL 2590.0042
LEU 2600.0051
GLY 2610.0079
GLU 2620.0129
PHE 2630.0155
ARG 2640.0153
ASN 2650.0169
GLU 2660.0153
GLY 2670.0149
ASN 2680.0123
LEU 2690.0095
GLU 2700.0077
LYS 2710.0058
PHE 2720.0080
ASP 2730.0068
LYS 2740.0068
SER 2750.0057
ALA 2760.0064
LEU 2770.0056
GLU 2780.0056
GLY 2790.0064
LEU 2800.0056
CYS 2810.0064
ASN 2820.0074
LEU 2830.0060
THR 2840.0059
ILE 2850.0049
GLU 2860.0054
GLU 2870.0058
PHE 2880.0062
ARG 2890.0075
LEU 2900.0093
ALA 2910.0113
TYR 2920.0144
LEU 2930.0139
ASP 2940.0144
TYR 2950.0138
TYR 2960.0140
LEU 2970.0172
ASP 2980.0173
GLY 2990.0154
ILE 3000.0140
ILE 3010.0136
ASP 3020.0101
LEU 3030.0110
PHE 3040.0102
ASN 3050.0092
CYS 3060.0096
LEU 3070.0089
THR 3080.0077
ASN 3090.0082
VAL 3100.0085
SER 3110.0079
SER 3120.0079
PHE 3130.0080
SER 3140.0091
LEU 3150.0106
VAL 3160.0121
SER 3170.0148
VAL 3180.0155
THR 3190.0159
ILE 3200.0158
GLU 3210.0162
ARG 3220.0162
VAL 3230.0123
LYS 3240.0126
ASP 3250.0127
PHE 3260.0087
SER 3270.0073
TYR 3280.0075
ASN 3290.0047
PHE 3300.0056
GLY 3310.0055
TRP 3320.0053
GLN 3330.0056
HIS 3340.0062
LEU 3350.0054
GLU 3360.0067
LEU 3370.0082
VAL 3380.0095
ASN 3390.0110
CYS 3400.0117
LYS 3410.0130
PHE 3420.0116
GLY 3430.0140
GLN 3440.0113
PHE 3450.0075
PRO 3460.0077
THR 3470.0063
LEU 3480.0037
LYS 3490.0038
LEU 3500.0018
LYS 3510.0024
SER 3520.0034
LEU 3530.0038
LYS 3540.0063
ARG 3550.0066
LEU 3560.0045
THR 3570.0049
PHE 3580.0033
THR 3590.0048
SER 3600.0051
ASN 3610.0054
LYS 3620.0067
GLY 3630.0080
GLY 3640.0084
ASN 3650.0059
ALA 3660.0087
PHE 3670.0060
SER 3680.0066
GLU 3690.0068
VAL 3700.0051
ASP 3710.0049
LEU 3720.0051
PRO 3730.0060
SER 3740.0063
LEU 3750.0067
GLU 3760.0083
PHE 3770.0083
LEU 3780.0077
ASP 3790.0076
LEU 3800.0074
SER 3810.0079
ARG 3820.0073
ASN 3830.0067
GLY 3840.0074
LEU 3850.0078
SER 3860.0088
PHE 3870.0114
LYS 3880.0111
GLY 3890.0094
CYS 3900.0080
CYS 3910.0063
SER 3920.0069
GLN 3930.0070
SER 3940.0080
ASP 3950.0083
PHE 3960.0082
GLY 3970.0072
THR 3980.0072
ILE 3990.0074
SER 4000.0074
LEU 4010.0075
LYS 4020.0069
TYR 4030.0074
LEU 4040.0081
ASP 4050.0088
LEU 4060.0096
SER 4070.0110
PHE 4080.0118
ASN 4090.0118
GLY 4100.0119
VAL 4110.0114
ILE 4120.0104
THR 4130.0094
MET 4140.0065
SER 4150.0080
SER 4160.0069
ASN 4170.0060
PHE 4180.0051
LEU 4190.0072
GLY 4200.0071
LEU 4210.0050
GLU 4220.0057
GLN 4230.0037
LEU 4240.0028
GLU 4250.0015
HIS 4260.0032
LEU 4270.0039
ASP 4280.0066
PHE 4290.0079
GLN 4300.0099
HIS 4310.0122
SER 4320.0114
ASN 4330.0108
LEU 4340.0075
LYS 4350.0071
GLN 4360.0055
MET 4370.0014
SER 4380.0033
GLU 4390.0062
PHE 4400.0077
SER 4410.0074
VAL 4420.0039
PHE 4430.0038
LEU 4440.0072
SER 4450.0074
LEU 4460.0048
ARG 4470.0088
ASN 4480.0063
LEU 4490.0051
ILE 4500.0066
TYR 4510.0059
LEU 4520.0049
ASP 4530.0054
ILE 4540.0043
SER 4550.0072
HIS 4560.0084
THR 4570.0089
HIS 4580.0079
THR 4590.0048
ARG 4600.0044
VAL 4610.0061
ALA 4620.0072
PHE 4630.0083
ASN 4640.0114
GLY 4650.0107
ILE 4660.0077
PHE 4670.0095
ASN 4680.0109
GLY 4690.0109
LEU 4700.0101
SER 4710.0124
SER 4720.0119
LEU 4730.0111
GLU 4740.0115
VAL 4750.0107
LEU 4760.0102
LYS 4770.0078
MET 4780.0077
ALA 4790.0094
GLY 4800.0097
ASN 4810.0080
SER 4820.0124
PHE 4830.0121
GLN 4840.0137
GLU 4850.0163
ASN 4860.0151
PHE 4870.0136
LEU 4880.0125
PRO 4890.0125
ASP 4900.0119
ILE 4910.0123
PHE 4920.0118
THR 4930.0120
GLU 4940.0123
LEU 4950.0124
ARG 4960.0129
ASN 4970.0123
LEU 4980.0116
THR 4990.0119
PHE 5000.0116
LEU 5010.0106
ASP 5020.0088
LEU 5030.0091
SER 5040.0095
GLN 5050.0098
CYS 5060.0093
GLN 5070.0124
LEU 5080.0105
GLU 5090.0113
GLN 5100.0106
LEU 5110.0089
SER 5120.0111
PRO 5130.0099
THR 5140.0094
ALA 5150.0093
PHE 5160.0082
ASN 5170.0075
SER 5180.0080
LEU 5190.0091
SER 5200.0088
SER 5210.0113
LEU 5220.0100
GLN 5230.0119
VAL 5240.0102
LEU 5250.0072
ASN 5260.0070
MET 5270.0047
SER 5280.0062
HIS 5290.0078
ASN 5300.0073
ASN 5310.0084
PHE 5320.0044
PHE 5330.0035
SER 5340.0027
LEU 5350.0039
ASP 5360.0049
THR 5370.0079
PHE 5380.0082
PRO 5390.0061
TYR 5400.0077
LYS 5410.0101
CYS 5420.0088
LEU 5430.0092
ASN 5440.0121
SER 5450.0135
LEU 5460.0125
GLN 5470.0150
VAL 5480.0123
LEU 5490.0088
ASP 5500.0075
TYR 5510.0042
SER 5520.0055
LEU 5530.0060
ASN 5540.0045
HIS 5550.0041
ILE 5560.0031
MET 5570.0041
THR 5580.0042
SER 5590.0061
LYS 5600.0057
LYS 5610.0080
GLN 5620.0101
GLU 5630.0108
LEU 5640.0108
GLN 5650.0139
HIS 5660.0122
PHE 5670.0122
PRO 5680.0144
SER 5690.0181
SER 5700.0181
LEU 5710.0159
ALA 5720.0138
PHE 5730.0116
LEU 5740.0088
ASN 5750.0079
LEU 5760.0050
THR 5770.0056
GLN 5780.0057
ASN 5790.0063
ASP 5800.0071
PHE 5810.0082
ALA 5820.0163
CYS 5830.0128
THR 5840.0154
CYS 5850.0161
GLU 5860.0198
HIS 5870.0132
GLN 5880.0118
SER 5890.0117
PHE 5900.0093
LEU 5910.0080
GLN 5920.0069
TRP 5930.0078
ILE 5940.0073
LYS 5950.0060
ASP 5960.0064
GLN 5970.0062
ARG 5980.0061
GLN 5990.0072
LEU 6000.0073
LEU 6010.0066
VAL 6020.0044
GLU 6030.0034
VAL 6040.0042
GLU 6050.0082
ARG 6060.0096
MET 6070.0041
GLU 6080.0084
CYS 6090.0113
ALA 6100.0167
THR 6110.0203
PRO 6120.0252
SER 6130.0307
ASP 6140.0264
LYS 6150.0174
GLN 6160.0212
GLY 6170.0171
MET 6180.0126
PRO 6190.0086
VAL 6200.0065
LEU 6210.0031
SER 6220.0078
LEU 6230.0046
ASN 6240.0074
ILE 6250.0105
THR 6260.0146
CYS 6270.0186
GLU 10.0102
ALA 20.0107
ALA 30.0087
ALA 40.0090
LYS 50.0108
MET 60.0080
GLN 70.0090
ARG 80.0081
LEU 90.0072
VAL 100.0084
LEU 110.0054
LEU 120.0043
LEU 130.0047
ALA 140.0066
ILE 150.0067
SER 160.0039
LEU 170.0015
LEU 180.0038
LEU 190.0039
TYR 200.0029
GLN 210.0055
ASP 220.0055
LEU 230.0060
PRO 240.0056
VAL 250.0055
ARG 260.0112
SER 270.0098
GLU 280.0142
PHE 290.0148
GLU 300.0112
LEU 310.0107
ASP 320.0129
ARG 330.0133
ILE 340.0129
CYS 350.0145
GLY 360.0158
TYR 370.0154
GLY 380.0142
THR 390.0156
ALA 400.0150
ARG 410.0106
CYS 420.0118
ARG 430.0133
LYS 440.0154
LYS 450.0153
CYS 460.0101
ARG 470.0096
SER 480.0096
GLN 490.0094
GLU 500.0096
TYR 510.0122
ARG 520.0125
ILE 530.0147
GLY 540.0147
ARG 550.0135
CYS 560.0144
PRO 570.0160
ASN 580.0167
THR 590.0139
TYR 600.0152
ALA 610.0111
CYS 620.0107
CYS 630.0106
LEU 640.0113
ARG 650.0113
LYS 660.0040
TRP 670.0059
ASP 680.0047
GLU 690.0059
SER 700.0056
LEU 710.0083
LEU 720.0102
ASN 730.0099
ARG 740.0119
THR 750.0165
LYS 760.0192
PRO 770.0300
GLU 780.0310
ALA 790.0424
ALA 800.0468
ALA 810.0114
LYS 820.0108
LYS 830.0127
GLU 840.0144
MET 850.0153
ASN 860.0144
LEU 870.0105
SER 880.0099
VAL 890.0063
GLY 900.0073
LEU 910.0070
GLY 920.0103
GLY 930.0078
GLY 940.0132
SER 950.0086
ASN 960.0084
LEU 970.0056
SER 980.0104
VAL 990.0084
GLY 1000.0135
LEU 1010.0141
GLY 1020.0171
GLU 1030.0164
ILE 1040.0102
GLY 1050.0084
GLY 1060.0140
GLY 1070.0142
SER 1080.0159
LYS 1090.0097
LEU 1100.0115
LEU 1110.0118
ASP 1120.0115
ILE 1130.0106
ASN 1140.0104
LEU 1150.0095
GLY 1160.0127
ARG 1170.0126
GLY 1180.0101
GLY 1190.0118
GLY 1200.0131
SER 1210.0094
MET 1220.0065
VAL 1230.0040
ASP 1240.0029
LEU 1250.0019
THR 1260.0063
PHE 1270.0063
GLY 1280.0089
GLY 1290.0102
VAL 1300.0116
GLY 1310.0356
GLY 1320.0275
GLY 1330.0161
SER 1340.0132
THR 1350.0036
PHE 1360.0039
THR 1370.0029
PHE 1380.0045
PHE 1390.0049
PRO 1400.0068
LEU 1410.0102
VAL 1420.0126
ILE 1430.0110
GLY 1440.0175
GLY 1450.0212
GLY 1460.0404
SER 1470.0319
ASP 1480.0222
ALA 1490.0148
MET 1500.0024
TYR 1510.0088
LEU 1520.0066
GLY 1530.0050
PHE 1540.0028
ALA 1550.0015
ALA 1560.0163
GLY 1570.0164
GLY 1580.0183
GLY 1590.0081
SER 1600.0097
ALA 1610.0153
GLY 1620.0120
GLY 1630.0079
GLU 1640.0077
ASN 1650.0067
HIS 1660.0052
VAL 1670.0041
ALA 1680.0033
PHE 1690.0022
GLY 1700.0031
PRO 1710.0061
GLY 1720.0063
PRO 1730.0053
GLY 1740.0060
VAL 1750.0057
ASP 1760.0045
LEU 1770.0049
THR 1780.0046
PHE 1790.0049
GLY 1800.0044
GLY 1810.0039
VAL 1820.0033
GLN 1830.0035
PHE 1840.0045
ALA 1850.0046
MET 1860.0079
VAL 1870.0076
ASN 1880.0094
ASN 1890.0113
GLY 1900.0134
PRO 1910.0144
GLY 1920.0095
PRO 1930.0017
GLY 1940.0073
GLU 1950.0029
SER 1960.0037
PHE 1970.0041
THR 1980.0024
ALA 1990.0021
GLN 2000.0018
PRO 2010.0034
ALA 2020.0017
ASP 2030.0032
MET 2040.0048
GLN 2050.0045
ALA 2060.0028
GLY 2070.0035
ILE 2080.0033
LYS 2090.0042
GLY 2100.0059
PRO 2110.0028
GLY 2120.0075
PRO 2130.0168
GLY 2140.0191
GLY 2150.0159
SER 2160.0140
ILE 2170.0130
GLN 2180.0179
VAL 2190.0208
ILE 2200.0249
ASN 2210.0301
GLY 2220.0360
SER 2230.0218
THR 2240.0137
ILE 2250.0205
GLY 2260.0342
THR 2270.0357
GLY 2280.0246
SER 2290.0341
LYS 2300.0258
LYS 2310.0126
THR 2320.0177
ILE 2330.0202
LEU 2340.0269
ILE 2350.0379
TYR 2360.0348
SER 2370.0291
ILE 2380.0163
ILE 2390.0104
GLY 2400.0133
VAL 2410.0111
LYS 2420.0104
LYS 2430.0089
GLY 2440.0107
THR 2450.0126
LEU 2460.0194
ALA 2470.0205
TRP 2480.0148
ALA 2490.0174
ARG 2500.0104
THR 2510.0222
GLY 2520.0102
PHE 2530.0125
SER 2540.0086
PRO 2550.0200
ALA 2560.0216
LYS 2570.0147
LYS 2580.0102
LEU 2590.0060
ASN 2600.0130
ALA 2610.0254
GLY 2620.0115
VAL 2630.0027
VAL 2640.0111
ARG 2650.0221
VAL 2660.0159
PHE 2670.0106
PHE 2680.0133
LEU 2690.0201
ASN 2700.0283
GLN 2710.0208
LYS 2720.0220
LYS 2730.0224
ALA 2740.0211
LYS 2750.0214
ASP 2760.0260
VAL 2770.0279
LEU 2780.0184
ARG 2790.0179
LYS 2800.0278
THR 2810.0419
SER 2820.0359
ARG 2830.0329
PRO 2840.0294
MET 2850.0168
VAL 2860.0253
ASP 2870.0179
LEU 2880.0154
THR 2890.0129
PHE 2900.0125
GLY 2910.0376
GLY 2920.0724

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.