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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 99  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0484
GLU 270.0151
PRO 280.0171
CYS 290.0117
VAL 300.0089
GLU 310.0037
VAL 320.0020
VAL 330.0062
PRO 340.0080
ASN 350.0081
ILE 360.0080
THR 370.0050
TYR 380.0041
GLN 390.0088
CYS 400.0115
MET 410.0159
GLU 420.0190
LEU 430.0179
ASN 440.0199
PHE 450.0168
TYR 460.0179
LYS 470.0166
ILE 480.0122
PRO 490.0099
ASP 500.0074
ASN 510.0090
LEU 520.0047
PRO 530.0040
PHE 540.0041
SER 550.0071
THR 560.0047
LYS 570.0082
ASN 580.0084
LEU 590.0079
ASP 600.0104
LEU 610.0122
SER 620.0142
PHE 630.0162
ASN 640.0160
PRO 650.0180
LEU 660.0168
ARG 670.0166
HIS 680.0146
LEU 690.0124
GLY 700.0108
SER 710.0098
TYR 720.0096
SER 730.0094
PHE 740.0080
PHE 750.0067
SER 760.0042
PHE 770.0053
PRO 780.0072
GLU 790.0078
LEU 800.0079
GLN 810.0100
VAL 820.0086
LEU 830.0088
ASP 840.0096
LEU 850.0109
SER 860.0122
ARG 870.0115
CYS 880.0128
GLU 890.0137
ILE 900.0150
GLN 910.0161
THR 920.0129
ILE 930.0115
GLU 940.0106
ASP 950.0106
GLY 960.0091
ALA 970.0100
TYR 980.0097
GLN 990.0099
SER 1000.0087
LEU 1010.0090
SER 1020.0090
HIS 1030.0081
LEU 1040.0077
SER 1050.0071
THR 1060.0068
LEU 1070.0062
ILE 1080.0068
LEU 1090.0075
THR 1100.0084
GLY 1110.0091
ASN 1120.0103
PRO 1130.0107
ILE 1140.0112
GLN 1150.0118
SER 1160.0123
LEU 1170.0063
ALA 1180.0062
LEU 1190.0056
GLY 1200.0073
ALA 1210.0078
PHE 1220.0067
SER 1230.0069
GLY 1240.0069
LEU 1250.0065
SER 1260.0064
SER 1270.0032
LEU 1280.0032
GLN 1290.0027
LYS 1300.0030
LEU 1310.0034
VAL 1320.0039
ALA 1330.0052
VAL 1340.0067
GLU 1350.0081
THR 1360.0076
ASN 1370.0134
LEU 1380.0113
ALA 1390.0128
SER 1400.0106
LEU 1410.0084
GLU 1420.0129
ASN 1430.0131
PHE 1440.0089
PRO 1450.0086
ILE 1460.0061
GLY 1470.0100
HIS 1480.0101
LEU 1490.0077
LYS 1500.0094
THR 1510.0081
LEU 1520.0056
LYS 1530.0057
GLU 1540.0040
LEU 1550.0021
ASN 1560.0015
VAL 1570.0047
ALA 1580.0077
HIS 1590.0115
ASN 1600.0115
LEU 1610.0139
ILE 1620.0122
GLN 1630.0134
SER 1640.0096
PHE 1650.0049
LYS 1660.0085
LEU 1670.0106
PRO 1680.0144
GLU 1690.0178
TYR 1700.0166
PHE 1710.0138
SER 1720.0177
ASN 1730.0174
LEU 1740.0136
THR 1750.0159
ASN 1760.0135
LEU 1770.0091
GLU 1780.0094
HIS 1790.0065
LEU 1800.0037
ASP 1810.0037
LEU 1820.0052
SER 1830.0096
SER 1840.0132
ASN 1850.0121
LYS 1860.0139
ILE 1870.0093
GLN 1880.0113
SER 1890.0080
ILE 1900.0047
TYR 1910.0034
CYS 1920.0071
THR 1930.0104
ASP 1940.0083
LEU 1950.0105
ARG 1960.0160
VAL 1970.0165
LEU 1980.0154
HIS 1990.0184
GLN 2000.0223
MET 2010.0229
PRO 2020.0233
LEU 2030.0243
LEU 2040.0178
ASN 2050.0156
LEU 2060.0096
SER 2070.0088
LEU 2080.0068
ASP 2090.0074
LEU 2100.0078
SER 2110.0108
LEU 2120.0124
ASN 2130.0110
PRO 2140.0127
MET 2150.0117
ASN 2160.0126
PHE 2170.0108
ILE 2180.0089
GLN 2190.0081
PRO 2200.0116
GLY 2210.0124
ALA 2220.0092
PHE 2230.0114
LYS 2240.0164
GLU 2250.0195
ILE 2260.0156
ARG 2270.0113
LEU 2280.0093
HIS 2290.0096
LYS 2300.0081
LEU 2310.0075
THR 2320.0090
LEU 2330.0097
ARG 2340.0101
ASN 2350.0107
ASN 2360.0104
PHE 2370.0113
ASP 2380.0108
SER 2390.0102
LEU 2400.0099
ASN 2410.0108
VAL 2420.0113
MET 2430.0111
LYS 2440.0114
THR 2450.0118
CYS 2460.0116
ILE 2470.0111
GLN 2480.0116
GLY 2490.0098
LEU 2500.0098
ALA 2510.0115
GLY 2520.0134
LEU 2530.0110
GLU 2540.0102
VAL 2550.0079
HIS 2560.0066
ARG 2570.0053
LEU 2580.0049
VAL 2590.0053
LEU 2600.0061
GLY 2610.0076
GLU 2620.0084
PHE 2630.0079
ARG 2640.0055
ASN 2650.0078
GLU 2660.0093
GLY 2670.0090
ASN 2680.0066
LEU 2690.0061
GLU 2700.0046
LYS 2710.0032
PHE 2720.0021
ASP 2730.0026
LYS 2740.0058
SER 2750.0061
ALA 2760.0066
LEU 2770.0043
GLU 2780.0050
GLY 2790.0055
LEU 2800.0049
CYS 2810.0055
ASN 2820.0077
LEU 2830.0062
THR 2840.0055
ILE 2850.0043
GLU 2860.0036
GLU 2870.0017
PHE 2880.0010
ARG 2890.0018
LEU 2900.0033
ALA 2910.0040
TYR 2920.0051
LEU 2930.0042
ASP 2940.0026
TYR 2950.0041
TYR 2960.0074
LEU 2970.0109
ASP 2980.0127
GLY 2990.0130
ILE 3000.0126
ILE 3010.0146
ASP 3020.0102
LEU 3030.0087
PHE 3040.0086
ASN 3050.0100
CYS 3060.0096
LEU 3070.0074
THR 3080.0084
ASN 3090.0084
VAL 3100.0068
SER 3110.0062
SER 3120.0058
PHE 3130.0054
SER 3140.0048
LEU 3150.0052
VAL 3160.0053
SER 3170.0050
VAL 3180.0072
THR 3190.0091
ILE 3200.0116
GLU 3210.0138
ARG 3220.0142
VAL 3230.0128
LYS 3240.0141
ASP 3250.0149
PHE 3260.0132
SER 3270.0126
TYR 3280.0136
ASN 3290.0132
PHE 3300.0127
GLY 3310.0126
TRP 3320.0082
GLN 3330.0076
HIS 3340.0069
LEU 3350.0062
GLU 3360.0059
LEU 3370.0075
VAL 3380.0065
ASN 3390.0067
CYS 3400.0080
LYS 3410.0088
PHE 3420.0104
GLY 3430.0117
GLN 3440.0102
PHE 3450.0085
PRO 3460.0099
THR 3470.0085
LEU 3480.0085
LYS 3490.0088
LEU 3500.0096
LYS 3510.0098
SER 3520.0082
LEU 3530.0069
LYS 3540.0073
ARG 3550.0065
LEU 3560.0045
THR 3570.0058
PHE 3580.0054
THR 3590.0052
SER 3600.0058
ASN 3610.0066
LYS 3620.0082
GLY 3630.0098
GLY 3640.0090
ASN 3650.0061
ALA 3660.0052
PHE 3670.0040
SER 3680.0039
GLU 3690.0023
VAL 3700.0035
ASP 3710.0038
LEU 3720.0039
PRO 3730.0053
SER 3740.0073
LEU 3750.0062
GLU 3760.0074
PHE 3770.0059
LEU 3780.0039
ASP 3790.0037
LEU 3800.0028
SER 3810.0034
ARG 3820.0040
ASN 3830.0042
GLY 3840.0043
LEU 3850.0039
SER 3860.0040
PHE 3870.0041
LYS 3880.0054
GLY 3890.0053
CYS 3900.0033
CYS 3910.0030
SER 3920.0049
GLN 3930.0055
SER 3940.0043
ASP 3950.0024
PHE 3960.0028
GLY 3970.0041
THR 3980.0055
ILE 3990.0074
SER 4000.0079
LEU 4010.0061
LYS 4020.0064
TYR 4030.0048
LEU 4040.0029
ASP 4050.0023
LEU 4060.0022
SER 4070.0043
PHE 4080.0042
ASN 4090.0042
GLY 4100.0044
VAL 4110.0046
ILE 4120.0037
THR 4130.0044
MET 4140.0034
SER 4150.0047
SER 4160.0044
ASN 4170.0054
PHE 4180.0048
LEU 4190.0066
GLY 4200.0072
LEU 4210.0059
GLU 4220.0071
GLN 4230.0074
LEU 4240.0055
GLU 4250.0055
HIS 4260.0044
LEU 4270.0008
ASP 4280.0014
PHE 4290.0031
GLN 4300.0041
HIS 4310.0056
SER 4320.0035
ASN 4330.0042
LEU 4340.0035
LYS 4350.0039
GLN 4360.0035
MET 4370.0023
SER 4380.0028
GLU 4390.0034
PHE 4400.0024
SER 4410.0015
VAL 4420.0026
PHE 4430.0020
LEU 4440.0035
SER 4450.0045
LEU 4460.0037
ARG 4470.0042
ASN 4480.0049
LEU 4490.0035
ILE 4500.0041
TYR 4510.0039
LEU 4520.0013
ASP 4530.0026
ILE 4540.0035
SER 4550.0048
HIS 4560.0060
THR 4570.0043
HIS 4580.0037
THR 4590.0034
ARG 4600.0036
VAL 4610.0043
ALA 4620.0029
PHE 4630.0024
ASN 4640.0029
GLY 4650.0024
ILE 4660.0018
PHE 4670.0016
ASN 4680.0011
GLY 4690.0013
LEU 4700.0023
SER 4710.0026
SER 4720.0027
LEU 4730.0029
GLU 4740.0041
VAL 4750.0043
LEU 4760.0037
LYS 4770.0040
MET 4780.0038
ALA 4790.0034
GLY 4800.0032
ASN 4810.0034
SER 4820.0029
PHE 4830.0038
GLN 4840.0050
GLU 4850.0051
ASN 4860.0039
PHE 4870.0053
LEU 4880.0048
PRO 4890.0058
ASP 4900.0060
ILE 4910.0059
PHE 4920.0052
THR 4930.0056
GLU 4940.0056
LEU 4950.0053
ARG 4960.0057
ASN 4970.0052
LEU 4980.0048
THR 4990.0049
PHE 5000.0044
LEU 5010.0042
ASP 5020.0030
LEU 5030.0029
SER 5040.0021
GLN 5050.0021
CYS 5060.0029
GLN 5070.0028
LEU 5080.0035
GLU 5090.0046
GLN 5100.0052
LEU 5110.0051
SER 5120.0070
PRO 5130.0064
THR 5140.0067
ALA 5150.0061
PHE 5160.0051
ASN 5170.0060
SER 5180.0064
LEU 5190.0056
SER 5200.0056
SER 5210.0054
LEU 5220.0048
GLN 5230.0040
VAL 5240.0033
LEU 5250.0032
ASN 5260.0025
MET 5270.0025
SER 5280.0018
HIS 5290.0018
ASN 5300.0027
ASN 5310.0040
PHE 5320.0042
PHE 5330.0056
SER 5340.0054
LEU 5350.0044
ASP 5360.0042
THR 5370.0046
PHE 5380.0049
PRO 5390.0046
TYR 5400.0033
LYS 5410.0032
CYS 5420.0042
LEU 5430.0038
ASN 5440.0038
SER 5450.0038
LEU 5460.0035
GLN 5470.0036
VAL 5480.0034
LEU 5490.0034
ASP 5500.0033
TYR 5510.0036
SER 5520.0041
LEU 5530.0045
ASN 5540.0045
HIS 5550.0054
ILE 5560.0053
MET 5570.0065
THR 5580.0064
SER 5590.0056
LYS 5600.0060
LYS 5610.0054
GLN 5620.0055
GLU 5630.0056
LEU 5640.0050
GLN 5650.0052
HIS 5660.0052
PHE 5670.0041
PRO 5680.0034
SER 5690.0034
SER 5700.0035
LEU 5710.0040
ALA 5720.0049
PHE 5730.0048
LEU 5740.0048
ASN 5750.0050
LEU 5760.0053
THR 5770.0056
GLN 5780.0061
ASN 5790.0058
ASP 5800.0062
PHE 5810.0059
ALA 5820.0060
CYS 5830.0043
THR 5840.0103
CYS 5850.0159
GLU 5860.0170
HIS 5870.0071
GLN 5880.0058
SER 5890.0045
PHE 5900.0039
LEU 5910.0025
GLN 5920.0031
TRP 5930.0038
ILE 5940.0058
LYS 5950.0068
ASP 5960.0067
GLN 5970.0058
ARG 5980.0057
GLN 5990.0066
LEU 6000.0067
LEU 6010.0059
VAL 6020.0053
GLU 6030.0051
VAL 6040.0053
GLU 6050.0061
ARG 6060.0064
MET 6070.0071
GLU 6080.0064
CYS 6090.0047
ALA 6100.0050
THR 6110.0038
PRO 6120.0043
SER 6130.0064
ASP 6140.0116
LYS 6150.0095
GLN 6160.0085
GLY 6170.0082
MET 6180.0079
PRO 6190.0078
VAL 6200.0055
LEU 6210.0062
SER 6220.0156
LEU 6230.0101
ASN 6240.0156
ILE 6250.0149
THR 6260.0227
CYS 6270.0295
GLU 10.0125
ALA 20.0102
ALA 30.0097
ALA 40.0122
LYS 50.0107
MET 60.0079
GLN 70.0102
ARG 80.0100
LEU 90.0081
VAL 100.0100
LEU 110.0046
LEU 120.0050
LEU 130.0054
ALA 140.0078
ILE 150.0081
SER 160.0040
LEU 170.0090
LEU 180.0136
LEU 190.0095
TYR 200.0035
GLN 210.0109
ASP 220.0116
LEU 230.0089
PRO 240.0095
VAL 250.0081
ARG 260.0175
SER 270.0132
GLU 280.0193
PHE 290.0197
GLU 300.0125
LEU 310.0101
ASP 320.0121
ARG 330.0116
ILE 340.0093
CYS 350.0095
GLY 360.0106
TYR 370.0110
GLY 380.0099
THR 390.0109
ALA 400.0090
ARG 410.0084
CYS 420.0141
ARG 430.0213
LYS 440.0288
LYS 450.0305
CYS 460.0198
ARG 470.0184
SER 480.0196
GLN 490.0152
GLU 500.0156
TYR 510.0176
ARG 520.0156
ILE 530.0141
GLY 540.0125
ARG 550.0104
CYS 560.0143
PRO 570.0239
ASN 580.0286
THR 590.0199
TYR 600.0216
ALA 610.0143
CYS 620.0100
CYS 630.0112
LEU 640.0099
ARG 650.0106
LYS 660.0099
TRP 670.0090
ASP 680.0068
GLU 690.0046
SER 700.0038
LEU 710.0073
LEU 720.0052
ASN 730.0040
ARG 740.0050
THR 750.0036
LYS 760.0054
PRO 770.0088
GLU 780.0055
ALA 790.0123
ALA 800.0177
ALA 810.0250
LYS 820.0200
LYS 830.0168
GLU 840.0129
MET 850.0085
ASN 860.0076
LEU 870.0065
SER 880.0063
VAL 890.0074
GLY 900.0073
LEU 910.0091
GLY 920.0093
GLY 930.0128
GLY 940.0160
SER 950.0106
ASN 960.0083
LEU 970.0084
SER 980.0083
VAL 990.0082
GLY 1000.0086
LEU 1010.0071
GLY 1020.0173
GLU 1030.0269
ILE 1040.0314
GLY 1050.0397
GLY 1060.0419
GLY 1070.0360
SER 1080.0352
LYS 1090.0212
LEU 1100.0206
LEU 1110.0132
ASP 1120.0107
ILE 1130.0118
ASN 1140.0111
LEU 1150.0150
GLY 1160.0221
ARG 1170.0219
GLY 1180.0121
GLY 1190.0182
GLY 1200.0109
SER 1210.0121
MET 1220.0102
VAL 1230.0085
ASP 1240.0067
LEU 1250.0053
THR 1260.0029
PHE 1270.0019
GLY 1280.0049
GLY 1290.0081
VAL 1300.0108
GLY 1310.0154
GLY 1320.0125
GLY 1330.0068
SER 1340.0093
THR 1350.0059
PHE 1360.0016
THR 1370.0028
PHE 1380.0030
PHE 1390.0047
PRO 1400.0054
LEU 1410.0078
VAL 1420.0062
ILE 1430.0058
GLY 1440.0051
GLY 1450.0056
GLY 1460.0355
SER 1470.0303
ASP 1480.0261
ALA 1490.0132
MET 1500.0065
TYR 1510.0056
LEU 1520.0032
GLY 1530.0038
PHE 1540.0016
ALA 1550.0022
ALA 1560.0095
GLY 1570.0138
GLY 1580.0194
GLY 1590.0156
SER 1600.0105
ALA 1610.0018
GLY 1620.0031
GLY 1630.0038
GLU 1640.0038
ASN 1650.0021
HIS 1660.0022
VAL 1670.0025
ALA 1680.0043
PHE 1690.0053
GLY 1700.0070
PRO 1710.0066
GLY 1720.0049
PRO 1730.0088
GLY 1740.0084
VAL 1750.0027
ASP 1760.0016
LEU 1770.0005
THR 1780.0022
PHE 1790.0033
GLY 1800.0051
GLY 1810.0097
VAL 1820.0080
GLN 1830.0052
PHE 1840.0028
ALA 1850.0010
MET 1860.0023
VAL 1870.0045
ASN 1880.0042
ASN 1890.0025
GLY 1900.0050
PRO 1910.0033
GLY 1920.0031
PRO 1930.0027
GLY 1940.0028
GLU 1950.0032
SER 1960.0064
PHE 1970.0031
THR 1980.0043
ALA 1990.0054
GLN 2000.0031
PRO 2010.0037
ALA 2020.0017
ASP 2030.0032
MET 2040.0052
GLN 2050.0060
ALA 2060.0069
GLY 2070.0052
ILE 2080.0038
LYS 2090.0026
GLY 2100.0026
PRO 2110.0055
GLY 2120.0097
PRO 2130.0021
GLY 2140.0112
GLY 2150.0153
SER 2160.0037
ILE 2170.0060
GLN 2180.0074
VAL 2190.0119
ILE 2200.0118
ASN 2210.0197
GLY 2220.0127
SER 2230.0191
THR 2240.0074
ILE 2250.0240
GLY 2260.0222
THR 2270.0183
GLY 2280.0168
SER 2290.0097
LYS 2300.0142
LYS 2310.0394
THR 2320.0420
ILE 2330.0239
LEU 2340.0185
ILE 2350.0209
TYR 2360.0222
SER 2370.0226
ILE 2380.0276
ILE 2390.0270
GLY 2400.0331
VAL 2410.0270
LYS 2420.0178
LYS 2430.0140
GLY 2440.0172
THR 2450.0199
LEU 2460.0398
ALA 2470.0358
TRP 2480.0276
ALA 2490.0239
ARG 2500.0170
THR 2510.0143
GLY 2520.0183
PHE 2530.0149
SER 2540.0213
PRO 2550.0192
ALA 2560.0237
LYS 2570.0181
LYS 2580.0156
LEU 2590.0156
ASN 2600.0187
ALA 2610.0130
GLY 2620.0185
VAL 2630.0116
VAL 2640.0309
ARG 2650.0227
VAL 2660.0214
PHE 2670.0173
PHE 2680.0183
LEU 2690.0229
ASN 2700.0302
GLN 2710.0207
LYS 2720.0185
LYS 2730.0193
ALA 2740.0199
LYS 2750.0177
ASP 2760.0240
VAL 2770.0253
LEU 2780.0157
ARG 2790.0136
LYS 2800.0235
THR 2810.0436
SER 2820.0342
ARG 2830.0305
PRO 2840.0261
MET 2850.0078
VAL 2860.0190
ASP 2870.0143
LEU 2880.0065
THR 2890.0043
PHE 2900.0088
GLY 2910.0279
GLY 2920.0484

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.