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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 100  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0619
GLU 270.0084
PRO 280.0081
CYS 290.0061
VAL 300.0092
GLU 310.0098
VAL 320.0116
VAL 330.0098
PRO 340.0082
ASN 350.0039
ILE 360.0042
THR 370.0055
TYR 380.0039
GLN 390.0049
CYS 400.0021
MET 410.0040
GLU 420.0041
LEU 430.0027
ASN 440.0026
PHE 450.0022
TYR 460.0034
LYS 470.0046
ILE 480.0041
PRO 490.0026
ASP 500.0053
ASN 510.0059
LEU 520.0040
PRO 530.0037
PHE 540.0054
SER 550.0038
THR 560.0028
LYS 570.0051
ASN 580.0053
LEU 590.0044
ASP 600.0045
LEU 610.0038
SER 620.0042
PHE 630.0044
ASN 640.0040
PRO 650.0044
LEU 660.0045
ARG 670.0041
HIS 680.0039
LEU 690.0039
GLY 700.0041
SER 710.0039
TYR 720.0043
SER 730.0040
PHE 740.0045
PHE 750.0050
SER 760.0054
PHE 770.0054
PRO 780.0068
GLU 790.0065
LEU 800.0059
GLN 810.0066
VAL 820.0053
LEU 830.0048
ASP 840.0044
LEU 850.0038
SER 860.0036
ARG 870.0038
CYS 880.0039
GLU 890.0036
ILE 900.0032
GLN 910.0029
THR 920.0025
ILE 930.0024
GLU 940.0027
ASP 950.0023
GLY 960.0026
ALA 970.0031
TYR 980.0036
GLN 990.0037
SER 1000.0045
LEU 1010.0046
SER 1020.0041
HIS 1030.0050
LEU 1040.0040
SER 1050.0045
THR 1060.0040
LEU 1070.0029
ILE 1080.0033
LEU 1090.0027
THR 1100.0036
GLY 1110.0037
ASN 1120.0031
PRO 1130.0024
ILE 1140.0018
GLN 1150.0021
SER 1160.0025
LEU 1170.0012
ALA 1180.0015
LEU 1190.0022
GLY 1200.0014
ALA 1210.0012
PHE 1220.0013
SER 1230.0006
GLY 1240.0015
LEU 1250.0018
SER 1260.0015
SER 1270.0016
LEU 1280.0020
GLN 1290.0032
LYS 1300.0036
LEU 1310.0033
VAL 1320.0044
ALA 1330.0046
VAL 1340.0059
GLU 1350.0066
THR 1360.0054
ASN 1370.0072
LEU 1380.0063
ALA 1390.0068
SER 1400.0061
LEU 1410.0050
GLU 1420.0066
ASN 1430.0066
PHE 1440.0054
PRO 1450.0044
ILE 1460.0034
GLY 1470.0047
HIS 1480.0033
LEU 1490.0024
LYS 1500.0025
THR 1510.0015
LEU 1520.0037
LYS 1530.0039
GLU 1540.0043
LEU 1550.0046
ASN 1560.0049
VAL 1570.0042
ALA 1580.0054
HIS 1590.0070
ASN 1600.0065
LEU 1610.0073
ILE 1620.0050
GLN 1630.0053
SER 1640.0046
PHE 1650.0035
LYS 1660.0045
LEU 1670.0049
PRO 1680.0062
GLU 1690.0065
TYR 1700.0057
PHE 1710.0043
SER 1720.0051
ASN 1730.0044
LEU 1740.0034
THR 1750.0030
ASN 1760.0021
LEU 1770.0025
GLU 1780.0027
HIS 1790.0032
LEU 1800.0032
ASP 1810.0038
LEU 1820.0020
SER 1830.0029
SER 1840.0041
ASN 1850.0038
LYS 1860.0044
ILE 1870.0023
GLN 1880.0024
SER 1890.0027
ILE 1900.0031
TYR 1910.0036
CYS 1920.0052
THR 1930.0062
ASP 1940.0053
LEU 1950.0050
ARG 1960.0067
VAL 1970.0064
LEU 1980.0054
HIS 1990.0071
GLN 2000.0080
MET 2010.0066
PRO 2020.0077
LEU 2030.0073
LEU 2040.0048
ASN 2050.0048
LEU 2060.0028
SER 2070.0035
LEU 2080.0031
ASP 2090.0034
LEU 2100.0030
SER 2110.0036
LEU 2120.0034
ASN 2130.0034
PRO 2140.0034
MET 2150.0034
ASN 2160.0035
PHE 2170.0043
ILE 2180.0044
GLN 2190.0042
PRO 2200.0051
GLY 2210.0054
ALA 2220.0043
PHE 2230.0051
LYS 2240.0061
GLU 2250.0067
ILE 2260.0057
ARG 2270.0057
LEU 2280.0055
HIS 2290.0059
LYS 2300.0056
LEU 2310.0051
THR 2320.0046
LEU 2330.0052
ARG 2340.0052
ASN 2350.0061
ASN 2360.0066
PHE 2370.0083
ASP 2380.0101
SER 2390.0089
LEU 2400.0069
ASN 2410.0085
VAL 2420.0082
MET 2430.0068
LYS 2440.0066
THR 2450.0079
CYS 2460.0074
ILE 2470.0070
GLN 2480.0073
GLY 2490.0073
LEU 2500.0067
ALA 2510.0065
GLY 2520.0058
LEU 2530.0058
GLU 2540.0059
VAL 2550.0060
HIS 2560.0062
ARG 2570.0054
LEU 2580.0050
VAL 2590.0048
LEU 2600.0042
GLY 2610.0040
GLU 2620.0058
PHE 2630.0075
ARG 2640.0105
ASN 2650.0115
GLU 2660.0111
GLY 2670.0126
ASN 2680.0098
LEU 2690.0077
GLU 2700.0084
LYS 2710.0055
PHE 2720.0033
ASP 2730.0015
LYS 2740.0032
SER 2750.0035
ALA 2760.0023
LEU 2770.0030
GLU 2780.0048
GLY 2790.0062
LEU 2800.0048
CYS 2810.0058
ASN 2820.0058
LEU 2830.0058
THR 2840.0056
ILE 2850.0049
GLU 2860.0046
GLU 2870.0030
PHE 2880.0026
ARG 2890.0031
LEU 2900.0032
ALA 2910.0050
TYR 2920.0062
LEU 2930.0059
ASP 2940.0085
TYR 2950.0073
TYR 2960.0089
LEU 2970.0105
ASP 2980.0127
GLY 2990.0118
ILE 3000.0094
ILE 3010.0108
ASP 3020.0080
LEU 3030.0050
PHE 3040.0041
ASN 3050.0067
CYS 3060.0058
LEU 3070.0032
THR 3080.0051
ASN 3090.0053
VAL 3100.0035
SER 3110.0033
SER 3120.0015
PHE 3130.0013
SER 3140.0030
LEU 3150.0041
VAL 3160.0061
SER 3170.0098
VAL 3180.0089
THR 3190.0114
ILE 3200.0116
GLU 3210.0146
ARG 3220.0147
VAL 3230.0124
LYS 3240.0136
ASP 3250.0119
PHE 3260.0097
SER 3270.0121
TYR 3280.0112
ASN 3290.0101
PHE 3300.0071
GLY 3310.0069
TRP 3320.0020
GLN 3330.0019
HIS 3340.0022
LEU 3350.0026
GLU 3360.0041
LEU 3370.0042
VAL 3380.0061
ASN 3390.0085
CYS 3400.0083
LYS 3410.0102
PHE 3420.0103
GLY 3430.0122
GLN 3440.0109
PHE 3450.0087
PRO 3460.0080
THR 3470.0095
LEU 3480.0073
LYS 3490.0075
LEU 3500.0058
LYS 3510.0065
SER 3520.0028
LEU 3530.0022
LYS 3540.0032
ARG 3550.0041
LEU 3560.0043
THR 3570.0035
PHE 3580.0037
THR 3590.0050
SER 3600.0065
ASN 3610.0063
LYS 3620.0062
GLY 3630.0075
GLY 3640.0080
ASN 3650.0061
ALA 3660.0065
PHE 3670.0048
SER 3680.0049
GLU 3690.0044
VAL 3700.0039
ASP 3710.0038
LEU 3720.0027
PRO 3730.0030
SER 3740.0028
LEU 3750.0024
GLU 3760.0035
PHE 3770.0043
LEU 3780.0039
ASP 3790.0042
LEU 3800.0040
SER 3810.0042
ARG 3820.0050
ASN 3830.0043
GLY 3840.0038
LEU 3850.0021
SER 3860.0017
PHE 3870.0018
LYS 3880.0015
GLY 3890.0017
CYS 3900.0020
CYS 3910.0023
SER 3920.0025
GLN 3930.0024
SER 3940.0028
ASP 3950.0028
PHE 3960.0024
GLY 3970.0028
THR 3980.0026
ILE 3990.0028
SER 4000.0032
LEU 4010.0033
LYS 4020.0039
TYR 4030.0036
LEU 4040.0032
ASP 4050.0032
LEU 4060.0030
SER 4070.0035
PHE 4080.0047
ASN 4090.0043
GLY 4100.0037
VAL 4110.0019
ILE 4120.0015
THR 4130.0015
MET 4140.0018
SER 4150.0027
SER 4160.0032
ASN 4170.0031
PHE 4180.0029
LEU 4190.0034
GLY 4200.0034
LEU 4210.0029
GLU 4220.0035
GLN 4230.0033
LEU 4240.0026
GLU 4250.0021
HIS 4260.0018
LEU 4270.0018
ASP 4280.0014
PHE 4290.0026
GLN 4300.0034
HIS 4310.0052
SER 4320.0034
ASN 4330.0028
LEU 4340.0014
LYS 4350.0008
GLN 4360.0013
MET 4370.0011
SER 4380.0018
GLU 4390.0024
PHE 4400.0031
SER 4410.0031
VAL 4420.0024
PHE 4430.0024
LEU 4440.0035
SER 4450.0037
LEU 4460.0028
ARG 4470.0040
ASN 4480.0032
LEU 4490.0022
ILE 4500.0020
TYR 4510.0013
LEU 4520.0010
ASP 4530.0014
ILE 4540.0019
SER 4550.0036
HIS 4560.0048
THR 4570.0025
HIS 4580.0026
THR 4590.0016
ARG 4600.0020
VAL 4610.0021
ALA 4620.0019
PHE 4630.0025
ASN 4640.0034
GLY 4650.0034
ILE 4660.0025
PHE 4670.0029
ASN 4680.0038
GLY 4690.0038
LEU 4700.0034
SER 4710.0044
SER 4720.0043
LEU 4730.0036
GLU 4740.0042
VAL 4750.0037
LEU 4760.0032
LYS 4770.0031
MET 4780.0026
ALA 4790.0038
GLY 4800.0039
ASN 4810.0027
SER 4820.0021
PHE 4830.0019
GLN 4840.0017
GLU 4850.0017
ASN 4860.0018
PHE 4870.0019
LEU 4880.0023
PRO 4890.0021
ASP 4900.0028
ILE 4910.0029
PHE 4920.0037
THR 4930.0043
GLU 4940.0042
LEU 4950.0041
ARG 4960.0050
ASN 4970.0053
LEU 4980.0048
THR 4990.0055
PHE 5000.0050
LEU 5010.0042
ASP 5020.0040
LEU 5030.0032
SER 5040.0044
GLN 5050.0045
CYS 5060.0030
GLN 5070.0023
LEU 5080.0020
GLU 5090.0019
GLN 5100.0015
LEU 5110.0014
SER 5120.0018
PRO 5130.0017
THR 5140.0022
ALA 5150.0025
PHE 5160.0030
ASN 5170.0034
SER 5180.0040
LEU 5190.0043
SER 5200.0045
SER 5210.0052
LEU 5220.0043
GLN 5230.0049
VAL 5240.0044
LEU 5250.0035
ASN 5260.0034
MET 5270.0028
SER 5280.0043
HIS 5290.0045
ASN 5300.0029
ASN 5310.0024
PHE 5320.0029
PHE 5330.0035
SER 5340.0031
LEU 5350.0025
ASP 5360.0022
THR 5370.0020
PHE 5380.0018
PRO 5390.0012
TYR 5400.0012
LYS 5410.0014
CYS 5420.0025
LEU 5430.0025
ASN 5440.0030
SER 5450.0034
LEU 5460.0029
GLN 5470.0023
VAL 5480.0019
LEU 5490.0012
ASP 5500.0015
TYR 5510.0016
SER 5520.0024
LEU 5530.0029
ASN 5540.0028
HIS 5550.0033
ILE 5560.0031
MET 5570.0043
THR 5580.0042
SER 5590.0040
LYS 5600.0045
LYS 5610.0044
GLN 5620.0045
GLU 5630.0035
LEU 5640.0036
GLN 5650.0033
HIS 5660.0023
PHE 5670.0019
PRO 5680.0014
SER 5690.0014
SER 5700.0011
LEU 5710.0013
ALA 5720.0025
PHE 5730.0025
LEU 5740.0028
ASN 5750.0030
LEU 5760.0035
THR 5770.0038
GLN 5780.0037
ASN 5790.0038
ASP 5800.0040
PHE 5810.0044
ALA 5820.0027
CYS 5830.0013
THR 5840.0018
CYS 5850.0040
GLU 5860.0045
HIS 5870.0030
GLN 5880.0026
SER 5890.0038
PHE 5900.0041
LEU 5910.0029
GLN 5920.0033
TRP 5930.0042
ILE 5940.0042
LYS 5950.0040
ASP 5960.0046
GLN 5970.0050
ARG 5980.0050
GLN 5990.0052
LEU 6000.0052
LEU 6010.0051
VAL 6020.0058
GLU 6030.0055
VAL 6040.0046
GLU 6050.0047
ARG 6060.0049
MET 6070.0058
GLU 6080.0053
CYS 6090.0044
ALA 6100.0056
THR 6110.0047
PRO 6120.0062
SER 6130.0111
ASP 6140.0120
LYS 6150.0079
GLN 6160.0099
GLY 6170.0079
MET 6180.0058
PRO 6190.0049
VAL 6200.0035
LEU 6210.0028
SER 6220.0031
LEU 6230.0019
ASN 6240.0025
ILE 6250.0022
THR 6260.0042
CYS 6270.0059
GLU 10.0082
ALA 20.0062
ALA 30.0078
ALA 40.0064
LYS 50.0025
MET 60.0053
GLN 70.0058
ARG 80.0063
LEU 90.0057
VAL 100.0054
LEU 110.0032
LEU 120.0043
LEU 130.0031
ALA 140.0011
ILE 150.0029
SER 160.0045
LEU 170.0046
LEU 180.0050
LEU 190.0056
TYR 200.0058
GLN 210.0043
ASP 220.0041
LEU 230.0030
PRO 240.0030
VAL 250.0036
ARG 260.0169
SER 270.0132
GLU 280.0111
PHE 290.0126
GLU 300.0120
LEU 310.0094
ASP 320.0087
ARG 330.0087
ILE 340.0086
CYS 350.0080
GLY 360.0076
TYR 370.0074
GLY 380.0087
THR 390.0095
ALA 400.0094
ARG 410.0088
CYS 420.0095
ARG 430.0118
LYS 440.0186
LYS 450.0205
CYS 460.0151
ARG 470.0146
SER 480.0174
GLN 490.0117
GLU 500.0105
TYR 510.0160
ARG 520.0120
ILE 530.0139
GLY 540.0100
ARG 550.0068
CYS 560.0129
PRO 570.0207
ASN 580.0212
THR 590.0143
TYR 600.0124
ALA 610.0071
CYS 620.0047
CYS 630.0047
LEU 640.0077
ARG 650.0082
LYS 660.0166
TRP 670.0138
ASP 680.0113
GLU 690.0105
SER 700.0079
LEU 710.0066
LEU 720.0066
ASN 730.0069
ARG 740.0028
THR 750.0011
LYS 760.0170
PRO 770.0306
GLU 780.0362
ALA 790.0541
ALA 800.0557
ALA 810.0170
LYS 820.0138
LYS 830.0115
GLU 840.0073
MET 850.0064
ASN 860.0100
LEU 870.0112
SER 880.0115
VAL 890.0129
GLY 900.0132
LEU 910.0104
GLY 920.0105
GLY 930.0157
GLY 940.0202
SER 950.0125
ASN 960.0088
LEU 970.0093
SER 980.0089
VAL 990.0108
GLY 1000.0097
LEU 1010.0141
GLY 1020.0138
GLU 1030.0121
ILE 1040.0188
GLY 1050.0206
GLY 1060.0179
GLY 1070.0109
SER 1080.0132
LYS 1090.0230
LEU 1100.0342
LEU 1110.0259
ASP 1120.0254
ILE 1130.0214
ASN 1140.0224
LEU 1150.0196
GLY 1160.0237
ARG 1170.0166
GLY 1180.0158
GLY 1190.0079
GLY 1200.0081
SER 1210.0132
MET 1220.0104
VAL 1230.0076
ASP 1240.0055
LEU 1250.0025
THR 1260.0046
PHE 1270.0073
GLY 1280.0115
GLY 1290.0172
VAL 1300.0210
GLY 1310.0541
GLY 1320.0434
GLY 1330.0321
SER 1340.0270
THR 1350.0168
PHE 1360.0102
THR 1370.0078
PHE 1380.0058
PHE 1390.0035
PRO 1400.0048
LEU 1410.0098
VAL 1420.0185
ILE 1430.0033
GLY 1440.0070
GLY 1450.0092
GLY 1460.0484
SER 1470.0373
ASP 1480.0263
ALA 1490.0160
MET 1500.0045
TYR 1510.0098
LEU 1520.0079
GLY 1530.0070
PHE 1540.0070
ALA 1550.0087
ALA 1560.0185
GLY 1570.0096
GLY 1580.0101
GLY 1590.0098
SER 1600.0203
ALA 1610.0275
GLY 1620.0251
GLY 1630.0186
GLU 1640.0113
ASN 1650.0071
HIS 1660.0052
VAL 1670.0049
ALA 1680.0038
PHE 1690.0027
GLY 1700.0033
PRO 1710.0075
GLY 1720.0046
PRO 1730.0102
GLY 1740.0104
VAL 1750.0064
ASP 1760.0071
LEU 1770.0046
THR 1780.0090
PHE 1790.0094
GLY 1800.0156
GLY 1810.0294
VAL 1820.0248
GLN 1830.0178
PHE 1840.0099
ALA 1850.0055
MET 1860.0043
VAL 1870.0102
ASN 1880.0129
ASN 1890.0159
GLY 1900.0208
PRO 1910.0189
GLY 1920.0194
PRO 1930.0131
GLY 1940.0126
GLU 1950.0160
SER 1960.0159
PHE 1970.0075
THR 1980.0033
ALA 1990.0087
GLN 2000.0141
PRO 2010.0055
ALA 2020.0047
ASP 2030.0115
MET 2040.0077
GLN 2050.0141
ALA 2060.0054
GLY 2070.0073
ILE 2080.0130
LYS 2090.0134
GLY 2100.0293
PRO 2110.0101
GLY 2120.0154
PRO 2130.0127
GLY 2140.0162
GLY 2150.0200
SER 2160.0264
ILE 2170.0249
GLN 2180.0204
VAL 2190.0307
ILE 2200.0362
ASN 2210.0619
GLY 2220.0238
SER 2230.0324
THR 2240.0212
ILE 2250.0284
GLY 2260.0274
THR 2270.0227
GLY 2280.0187
SER 2290.0210
LYS 2300.0233
LYS 2310.0268
THR 2320.0192
ILE 2330.0202
LEU 2340.0123
ILE 2350.0143
TYR 2360.0202
SER 2370.0221
ILE 2380.0278
ILE 2390.0258
GLY 2400.0324
VAL 2410.0161
LYS 2420.0092
LYS 2430.0083
GLY 2440.0132
THR 2450.0122
LEU 2460.0265
ALA 2470.0252
TRP 2480.0231
ALA 2490.0222
ARG 2500.0207
THR 2510.0139
GLY 2520.0114
PHE 2530.0065
SER 2540.0063
PRO 2550.0148
ALA 2560.0396
LYS 2570.0397
LYS 2580.0304
LEU 2590.0222
ASN 2600.0182
ALA 2610.0509
GLY 2620.0311
VAL 2630.0165
VAL 2640.0181
ARG 2650.0207
VAL 2660.0147
PHE 2670.0199
PHE 2680.0226
LEU 2690.0314
ASN 2700.0392
GLN 2710.0370
LYS 2720.0304
LYS 2730.0320
ALA 2740.0346
LYS 2750.0302
ASP 2760.0279
VAL 2770.0256
LEU 2780.0314
ARG 2790.0337
LYS 2800.0287
THR 2810.0350
SER 2820.0514
ARG 2830.0261
PRO 2840.0302
MET 2850.0334
VAL 2860.0435
ASP 2870.0429
LEU 2880.0353
THR 2890.0305
PHE 2900.0136
GLY 2910.0318
GLY 2920.0410

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.