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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 102  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0504
GLU 270.0070
PRO 280.0087
CYS 290.0072
VAL 300.0070
GLU 310.0051
VAL 320.0051
VAL 330.0024
PRO 340.0027
ASN 350.0018
ILE 360.0014
THR 370.0028
TYR 380.0038
GLN 390.0057
CYS 400.0061
MET 410.0078
GLU 420.0093
LEU 430.0089
ASN 440.0097
PHE 450.0082
TYR 460.0088
LYS 470.0072
ILE 480.0054
PRO 490.0043
ASP 500.0026
ASN 510.0032
LEU 520.0020
PRO 530.0011
PHE 540.0019
SER 550.0025
THR 560.0021
LYS 570.0035
ASN 580.0040
LEU 590.0042
ASP 600.0053
LEU 610.0060
SER 620.0069
PHE 630.0079
ASN 640.0077
PRO 650.0085
LEU 660.0078
ARG 670.0074
HIS 680.0062
LEU 690.0050
GLY 700.0041
SER 710.0040
TYR 720.0045
SER 730.0042
PHE 740.0040
PHE 750.0036
SER 760.0029
PHE 770.0033
PRO 780.0039
GLU 790.0038
LEU 800.0041
GLN 810.0048
VAL 820.0044
LEU 830.0044
ASP 840.0048
LEU 850.0053
SER 860.0059
ARG 870.0053
CYS 880.0058
GLU 890.0061
ILE 900.0065
GLN 910.0069
THR 920.0053
ILE 930.0044
GLU 940.0041
ASP 950.0044
GLY 960.0040
ALA 970.0044
TYR 980.0044
GLN 990.0044
SER 1000.0043
LEU 1010.0043
SER 1020.0038
HIS 1030.0036
LEU 1040.0036
SER 1050.0036
THR 1060.0036
LEU 1070.0029
ILE 1080.0032
LEU 1090.0034
THR 1100.0039
GLY 1110.0042
ASN 1120.0039
PRO 1130.0040
ILE 1140.0046
GLN 1150.0050
SER 1160.0056
LEU 1170.0036
ALA 1180.0032
LEU 1190.0027
GLY 1200.0031
ALA 1210.0036
PHE 1220.0038
SER 1230.0032
GLY 1240.0034
LEU 1250.0033
SER 1260.0026
SER 1270.0012
LEU 1280.0013
GLN 1290.0012
LYS 1300.0014
LEU 1310.0016
VAL 1320.0033
ALA 1330.0044
VAL 1340.0053
GLU 1350.0065
THR 1360.0063
ASN 1370.0100
LEU 1380.0084
ALA 1390.0079
SER 1400.0073
LEU 1410.0072
GLU 1420.0099
ASN 1430.0104
PHE 1440.0082
PRO 1450.0077
ILE 1460.0057
GLY 1470.0067
HIS 1480.0060
LEU 1490.0043
LYS 1500.0043
THR 1510.0026
LEU 1520.0025
LYS 1530.0012
GLU 1540.0004
LEU 1550.0018
ASN 1560.0026
VAL 1570.0057
ALA 1580.0057
HIS 1590.0073
ASN 1600.0076
LEU 1610.0077
ILE 1620.0072
GLN 1630.0065
SER 1640.0056
PHE 1650.0049
LYS 1660.0072
LEU 1670.0082
PRO 1680.0108
GLU 1690.0131
TYR 1700.0123
PHE 1710.0098
SER 1720.0114
ASN 1730.0103
LEU 1740.0075
THR 1750.0078
ASN 1760.0051
LEU 1770.0030
GLU 1780.0023
HIS 1790.0008
LEU 1800.0009
ASP 1810.0024
LEU 1820.0039
SER 1830.0048
SER 1840.0066
ASN 1850.0060
LYS 1860.0059
ILE 1870.0044
GLN 1880.0043
SER 1890.0040
ILE 1900.0051
TYR 1910.0067
CYS 1920.0090
THR 1930.0100
ASP 1940.0080
LEU 1950.0096
ARG 1960.0127
VAL 1970.0117
LEU 1980.0107
HIS 1990.0130
GLN 2000.0150
MET 2010.0138
PRO 2020.0124
LEU 2030.0111
LEU 2040.0073
ASN 2050.0054
LEU 2060.0028
SER 2070.0033
LEU 2080.0031
ASP 2090.0042
LEU 2100.0040
SER 2110.0053
LEU 2120.0057
ASN 2130.0049
PRO 2140.0052
MET 2150.0050
ASN 2160.0057
PHE 2170.0056
ILE 2180.0063
GLN 2190.0078
PRO 2200.0098
GLY 2210.0110
ALA 2220.0087
PHE 2230.0086
LYS 2240.0117
GLU 2250.0124
ILE 2260.0094
ARG 2270.0059
LEU 2280.0044
HIS 2290.0050
LYS 2300.0056
LEU 2310.0054
THR 2320.0051
LEU 2330.0052
ARG 2340.0053
ASN 2350.0054
ASN 2360.0053
PHE 2370.0048
ASP 2380.0049
SER 2390.0043
LEU 2400.0035
ASN 2410.0046
VAL 2420.0055
MET 2430.0046
LYS 2440.0048
THR 2450.0057
CYS 2460.0056
ILE 2470.0060
GLN 2480.0068
GLY 2490.0064
LEU 2500.0060
ALA 2510.0069
GLY 2520.0077
LEU 2530.0061
GLU 2540.0056
VAL 2550.0056
HIS 2560.0065
ARG 2570.0064
LEU 2580.0053
VAL 2590.0055
LEU 2600.0046
GLY 2610.0049
GLU 2620.0046
PHE 2630.0046
ARG 2640.0049
ASN 2650.0050
GLU 2660.0048
GLY 2670.0047
ASN 2680.0027
LEU 2690.0021
GLU 2700.0037
LYS 2710.0033
PHE 2720.0040
ASP 2730.0054
LYS 2740.0061
SER 2750.0040
ALA 2760.0022
LEU 2770.0011
GLU 2780.0017
GLY 2790.0016
LEU 2800.0024
CYS 2810.0033
ASN 2820.0030
LEU 2830.0033
THR 2840.0046
ILE 2850.0053
GLU 2860.0072
GLU 2870.0067
PHE 2880.0049
ARG 2890.0040
LEU 2900.0027
ALA 2910.0039
TYR 2920.0028
LEU 2930.0024
ASP 2940.0029
TYR 2950.0044
TYR 2960.0065
LEU 2970.0150
ASP 2980.0186
GLY 2990.0169
ILE 3000.0144
ILE 3010.0184
ASP 3020.0141
LEU 3030.0109
PHE 3040.0096
ASN 3050.0127
CYS 3060.0118
LEU 3070.0082
THR 3080.0114
ASN 3090.0127
VAL 3100.0096
SER 3110.0106
SER 3120.0074
PHE 3130.0048
SER 3140.0023
LEU 3150.0017
VAL 3160.0040
SER 3170.0082
VAL 3180.0084
THR 3190.0131
ILE 3200.0148
GLU 3210.0194
ARG 3220.0206
VAL 3230.0158
LYS 3240.0185
ASP 3250.0186
PHE 3260.0140
SER 3270.0166
TYR 3280.0180
ASN 3290.0179
PHE 3300.0151
GLY 3310.0159
TRP 3320.0075
GLN 3330.0076
HIS 3340.0057
LEU 3350.0035
GLU 3360.0021
LEU 3370.0031
VAL 3380.0064
ASN 3390.0103
CYS 3400.0101
LYS 3410.0133
PHE 3420.0136
GLY 3430.0170
GLN 3440.0134
PHE 3450.0084
PRO 3460.0079
THR 3470.0090
LEU 3480.0076
LYS 3490.0102
LEU 3500.0105
LYS 3510.0131
SER 3520.0088
LEU 3530.0066
LYS 3540.0071
ARG 3550.0055
LEU 3560.0032
THR 3570.0032
PHE 3580.0031
THR 3590.0069
SER 3600.0104
ASN 3610.0099
LYS 3620.0145
GLY 3630.0143
GLY 3640.0120
ASN 3650.0095
ALA 3660.0075
PHE 3670.0046
SER 3680.0025
GLU 3690.0015
VAL 3700.0029
ASP 3710.0052
LEU 3720.0054
PRO 3730.0065
SER 3740.0067
LEU 3750.0059
GLU 3760.0064
PHE 3770.0054
LEU 3780.0041
ASP 3790.0041
LEU 3800.0038
SER 3810.0057
ARG 3820.0085
ASN 3830.0076
GLY 3840.0094
LEU 3850.0075
SER 3860.0087
PHE 3870.0105
LYS 3880.0127
GLY 3890.0138
CYS 3900.0121
CYS 3910.0117
SER 3920.0106
GLN 3930.0097
SER 3940.0090
ASP 3950.0078
PHE 3960.0065
GLY 3970.0052
THR 3980.0049
ILE 3990.0047
SER 4000.0046
LEU 4010.0047
LYS 4020.0060
TYR 4030.0048
LEU 4040.0049
ASP 4050.0043
LEU 4060.0053
SER 4070.0062
PHE 4080.0073
ASN 4090.0076
GLY 4100.0102
VAL 4110.0127
ILE 4120.0134
THR 4130.0157
MET 4140.0149
SER 4150.0171
SER 4160.0159
ASN 4170.0127
PHE 4180.0112
LEU 4190.0137
GLY 4200.0129
LEU 4210.0099
GLU 4220.0100
GLN 4230.0088
LEU 4240.0064
GLU 4250.0061
HIS 4260.0036
LEU 4270.0031
ASP 4280.0028
PHE 4290.0055
GLN 4300.0064
HIS 4310.0088
SER 4320.0099
ASN 4330.0134
LEU 4340.0125
LYS 4350.0159
GLN 4360.0167
MET 4370.0111
SER 4380.0120
GLU 4390.0150
PHE 4400.0120
SER 4410.0080
VAL 4420.0097
PHE 4430.0070
LEU 4440.0095
SER 4450.0110
LEU 4460.0079
ARG 4470.0103
ASN 4480.0102
LEU 4490.0068
ILE 4500.0078
TYR 4510.0059
LEU 4520.0030
ASP 4530.0044
ILE 4540.0048
SER 4550.0072
HIS 4560.0092
THR 4570.0100
HIS 4580.0123
THR 4590.0093
ARG 4600.0104
VAL 4610.0078
ALA 4620.0100
PHE 4630.0060
ASN 4640.0050
GLY 4650.0017
ILE 4660.0037
PHE 4670.0045
ASN 4680.0039
GLY 4690.0052
LEU 4700.0057
SER 4710.0087
SER 4720.0095
LEU 4730.0082
GLU 4740.0103
VAL 4750.0098
LEU 4760.0083
LYS 4770.0082
MET 4780.0080
ALA 4790.0095
GLY 4800.0099
ASN 4810.0087
SER 4820.0128
PHE 4830.0128
GLN 4840.0132
GLU 4850.0154
ASN 4860.0156
PHE 4870.0153
LEU 4880.0143
PRO 4890.0141
ASP 4900.0135
ILE 4910.0122
PHE 4920.0114
THR 4930.0115
GLU 4940.0098
LEU 4950.0103
ARG 4960.0117
ASN 4970.0107
LEU 4980.0107
THR 4990.0116
PHE 5000.0114
LEU 5010.0111
ASP 5020.0093
LEU 5030.0095
SER 5040.0090
GLN 5050.0093
CYS 5060.0098
GLN 5070.0117
LEU 5080.0118
GLU 5090.0128
GLN 5100.0134
LEU 5110.0130
SER 5120.0154
PRO 5130.0144
THR 5140.0150
ALA 5150.0147
PHE 5160.0134
ASN 5170.0142
SER 5180.0145
LEU 5190.0128
SER 5200.0118
SER 5210.0107
LEU 5220.0093
GLN 5230.0086
VAL 5240.0087
LEU 5250.0088
ASN 5260.0090
MET 5270.0051
SER 5280.0053
HIS 5290.0077
ASN 5300.0073
ASN 5310.0067
PHE 5320.0048
PHE 5330.0052
SER 5340.0037
LEU 5350.0023
ASP 5360.0010
THR 5370.0019
PHE 5380.0045
PRO 5390.0078
TYR 5400.0067
LYS 5410.0081
CYS 5420.0106
LEU 5430.0087
ASN 5440.0087
SER 5450.0074
LEU 5460.0053
GLN 5470.0015
VAL 5480.0021
LEU 5490.0022
ASP 5500.0038
TYR 5510.0037
SER 5520.0048
LEU 5530.0071
ASN 5540.0054
HIS 5550.0066
ILE 5560.0060
MET 5570.0088
THR 5580.0095
SER 5590.0095
LYS 5600.0108
LYS 5610.0108
GLN 5620.0099
GLU 5630.0056
LEU 5640.0073
GLN 5650.0091
HIS 5660.0070
PHE 5670.0033
PRO 5680.0061
SER 5690.0085
SER 5700.0058
LEU 5710.0024
ALA 5720.0068
PHE 5730.0070
LEU 5740.0069
ASN 5750.0076
LEU 5760.0078
THR 5770.0096
GLN 5780.0097
ASN 5790.0091
ASP 5800.0096
PHE 5810.0107
ALA 5820.0100
CYS 5830.0027
THR 5840.0036
CYS 5850.0085
GLU 5860.0131
HIS 5870.0106
GLN 5880.0097
SER 5890.0124
PHE 5900.0110
LEU 5910.0076
GLN 5920.0084
TRP 5930.0103
ILE 5940.0085
LYS 5950.0075
ASP 5960.0101
GLN 5970.0099
ARG 5980.0093
GLN 5990.0099
LEU 6000.0107
LEU 6010.0101
VAL 6020.0121
GLU 6030.0119
VAL 6040.0102
GLU 6050.0102
ARG 6060.0103
MET 6070.0093
GLU 6080.0085
CYS 6090.0103
ALA 6100.0168
THR 6110.0186
PRO 6120.0240
SER 6130.0386
ASP 6140.0391
LYS 6150.0244
GLN 6160.0278
GLY 6170.0176
MET 6180.0118
PRO 6190.0045
VAL 6200.0029
LEU 6210.0057
SER 6220.0098
LEU 6230.0073
ASN 6240.0106
ILE 6250.0104
THR 6260.0128
CYS 6270.0101
GLU 10.0247
ALA 20.0216
ALA 30.0094
ALA 40.0110
LYS 50.0211
MET 60.0125
GLN 70.0181
ARG 80.0192
LEU 90.0133
VAL 100.0159
LEU 110.0066
LEU 120.0064
LEU 130.0050
ALA 140.0137
ILE 150.0161
SER 160.0144
LEU 170.0118
LEU 180.0245
LEU 190.0230
TYR 200.0107
GLN 210.0179
ASP 220.0192
LEU 230.0103
PRO 240.0116
VAL 250.0132
ARG 260.0354
SER 270.0213
GLU 280.0315
PHE 290.0293
GLU 300.0161
LEU 310.0059
ASP 320.0061
ARG 330.0062
ILE 340.0047
CYS 350.0057
GLY 360.0051
TYR 370.0048
GLY 380.0052
THR 390.0058
ALA 400.0061
ARG 410.0054
CYS 420.0045
ARG 430.0066
LYS 440.0098
LYS 450.0117
CYS 460.0070
ARG 470.0076
SER 480.0090
GLN 490.0088
GLU 500.0079
TYR 510.0085
ARG 520.0070
ILE 530.0059
GLY 540.0049
ARG 550.0056
CYS 560.0067
PRO 570.0103
ASN 580.0107
THR 590.0124
TYR 600.0100
ALA 610.0058
CYS 620.0053
CYS 630.0056
LEU 640.0067
ARG 650.0075
LYS 660.0068
TRP 670.0068
ASP 680.0067
GLU 690.0068
SER 700.0067
LEU 710.0058
LEU 720.0075
ASN 730.0081
ARG 740.0071
THR 750.0084
LYS 760.0154
PRO 770.0228
GLU 780.0253
ALA 790.0353
ALA 800.0365
ALA 810.0176
LYS 820.0124
LYS 830.0135
GLU 840.0118
MET 850.0151
ASN 860.0154
LEU 870.0125
SER 880.0116
VAL 890.0101
GLY 900.0098
LEU 910.0122
GLY 920.0180
GLY 930.0215
GLY 940.0134
SER 950.0115
ASN 960.0142
LEU 970.0137
SER 980.0159
VAL 990.0155
GLY 1000.0185
LEU 1010.0151
GLY 1020.0118
GLU 1030.0097
ILE 1040.0053
GLY 1050.0099
GLY 1060.0180
GLY 1070.0143
SER 1080.0115
LYS 1090.0064
LEU 1100.0088
LEU 1110.0118
ASP 1120.0143
ILE 1130.0086
ASN 1140.0118
LEU 1150.0065
GLY 1160.0092
ARG 1170.0082
GLY 1180.0077
GLY 1190.0114
GLY 1200.0182
SER 1210.0091
MET 1220.0073
VAL 1230.0068
ASP 1240.0053
LEU 1250.0056
THR 1260.0068
PHE 1270.0033
GLY 1280.0045
GLY 1290.0038
VAL 1300.0080
GLY 1310.0353
GLY 1320.0330
GLY 1330.0307
SER 1340.0265
THR 1350.0239
PHE 1360.0124
THR 1370.0100
PHE 1380.0055
PHE 1390.0044
PRO 1400.0057
LEU 1410.0048
VAL 1420.0035
ILE 1430.0059
GLY 1440.0129
GLY 1450.0162
GLY 1460.0212
SER 1470.0168
ASP 1480.0143
ALA 1490.0067
MET 1500.0064
TYR 1510.0053
LEU 1520.0043
GLY 1530.0062
PHE 1540.0094
ALA 1550.0124
ALA 1560.0204
GLY 1570.0199
GLY 1580.0209
GLY 1590.0237
SER 1600.0274
ALA 1610.0246
GLY 1620.0167
GLY 1630.0078
GLU 1640.0035
ASN 1650.0050
HIS 1660.0054
VAL 1670.0053
ALA 1680.0049
PHE 1690.0049
GLY 1700.0045
PRO 1710.0181
GLY 1720.0171
PRO 1730.0158
GLY 1740.0091
VAL 1750.0061
ASP 1760.0031
LEU 1770.0051
THR 1780.0026
PHE 1790.0046
GLY 1800.0029
GLY 1810.0074
VAL 1820.0101
GLN 1830.0108
PHE 1840.0154
ALA 1850.0182
MET 1860.0202
VAL 1870.0237
ASN 1880.0126
ASN 1890.0061
GLY 1900.0229
PRO 1910.0163
GLY 1920.0126
PRO 1930.0083
GLY 1940.0100
GLU 1950.0070
SER 1960.0106
PHE 1970.0068
THR 1980.0019
ALA 1990.0018
GLN 2000.0070
PRO 2010.0063
ALA 2020.0022
ASP 2030.0080
MET 2040.0066
GLN 2050.0058
ALA 2060.0101
GLY 2070.0097
ILE 2080.0065
LYS 2090.0087
GLY 2100.0197
PRO 2110.0049
GLY 2120.0079
PRO 2130.0091
GLY 2140.0085
GLY 2150.0045
SER 2160.0197
ILE 2170.0151
GLN 2180.0180
VAL 2190.0141
ILE 2200.0160
ASN 2210.0381
GLY 2220.0309
SER 2230.0136
THR 2240.0171
ILE 2250.0313
GLY 2260.0420
THR 2270.0375
GLY 2280.0211
SER 2290.0225
LYS 2300.0235
LYS 2310.0268
THR 2320.0309
ILE 2330.0144
LEU 2340.0188
ILE 2350.0066
TYR 2360.0157
SER 2370.0110
ILE 2380.0120
ILE 2390.0121
GLY 2400.0184
VAL 2410.0134
LYS 2420.0120
LYS 2430.0102
GLY 2440.0108
THR 2450.0126
LEU 2460.0191
ALA 2470.0164
TRP 2480.0105
ALA 2490.0099
ARG 2500.0067
THR 2510.0225
GLY 2520.0183
PHE 2530.0194
SER 2540.0162
PRO 2550.0159
ALA 2560.0227
LYS 2570.0113
LYS 2580.0100
LEU 2590.0029
ASN 2600.0129
ALA 2610.0247
GLY 2620.0211
VAL 2630.0200
VAL 2640.0191
ARG 2650.0158
VAL 2660.0176
PHE 2670.0156
PHE 2680.0204
LEU 2690.0199
ASN 2700.0212
GLN 2710.0148
LYS 2720.0172
LYS 2730.0214
ALA 2740.0201
LYS 2750.0205
ASP 2760.0200
VAL 2770.0126
LEU 2780.0123
ARG 2790.0135
LYS 2800.0058
THR 2810.0280
SER 2820.0372
ARG 2830.0178
PRO 2840.0195
MET 2850.0131
VAL 2860.0387
ASP 2870.0314
LEU 2880.0163
THR 2890.0095
PHE 2900.0131
GLY 2910.0353
GLY 2920.0504

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.