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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 105  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0686
GLU 270.0160
PRO 280.0163
CYS 290.0103
VAL 300.0099
GLU 310.0103
VAL 320.0108
VAL 330.0118
PRO 340.0105
ASN 350.0050
ILE 360.0072
THR 370.0044
TYR 380.0017
GLN 390.0022
CYS 400.0067
MET 410.0067
GLU 420.0093
LEU 430.0110
ASN 440.0138
PHE 450.0135
TYR 460.0164
LYS 470.0159
ILE 480.0131
PRO 490.0105
ASP 500.0123
ASN 510.0104
LEU 520.0066
PRO 530.0038
PHE 540.0068
SER 550.0065
THR 560.0053
LYS 570.0074
ASN 580.0070
LEU 590.0067
ASP 600.0067
LEU 610.0085
SER 620.0091
PHE 630.0102
ASN 640.0108
PRO 650.0130
LEU 660.0129
ARG 670.0117
HIS 680.0088
LEU 690.0069
GLY 700.0048
SER 710.0037
TYR 720.0067
SER 730.0075
PHE 740.0083
PHE 750.0082
SER 760.0094
PHE 770.0087
PRO 780.0096
GLU 790.0088
LEU 800.0087
GLN 810.0089
VAL 820.0078
LEU 830.0081
ASP 840.0084
LEU 850.0088
SER 860.0092
ARG 870.0096
CYS 880.0094
GLU 890.0094
ILE 900.0091
GLN 910.0091
THR 920.0048
ILE 930.0039
GLU 940.0018
ASP 950.0015
GLY 960.0013
ALA 970.0048
TYR 980.0052
GLN 990.0047
SER 1000.0057
LEU 1010.0062
SER 1020.0055
HIS 1030.0065
LEU 1040.0060
SER 1050.0061
THR 1060.0060
LEU 1070.0056
ILE 1080.0064
LEU 1090.0059
THR 1100.0070
GLY 1110.0075
ASN 1120.0068
PRO 1130.0067
ILE 1140.0056
GLN 1150.0058
SER 1160.0053
LEU 1170.0031
ALA 1180.0043
LEU 1190.0052
GLY 1200.0039
ALA 1210.0025
PHE 1220.0026
SER 1230.0028
GLY 1240.0027
LEU 1250.0032
SER 1260.0042
SER 1270.0049
LEU 1280.0045
GLN 1290.0062
LYS 1300.0054
LEU 1310.0039
VAL 1320.0040
ALA 1330.0028
VAL 1340.0042
GLU 1350.0059
THR 1360.0046
ASN 1370.0101
LEU 1380.0083
ALA 1390.0090
SER 1400.0084
LEU 1410.0082
GLU 1420.0109
ASN 1430.0110
PHE 1440.0086
PRO 1450.0098
ILE 1460.0090
GLY 1470.0112
HIS 1480.0111
LEU 1490.0090
LYS 1500.0111
THR 1510.0098
LEU 1520.0082
LYS 1530.0082
GLU 1540.0059
LEU 1550.0043
ASN 1560.0019
VAL 1570.0016
ALA 1580.0033
HIS 1590.0065
ASN 1600.0069
LEU 1610.0099
ILE 1620.0076
GLN 1630.0070
SER 1640.0068
PHE 1650.0075
LYS 1660.0084
LEU 1670.0094
PRO 1680.0108
GLU 1690.0130
TYR 1700.0146
PHE 1710.0136
SER 1720.0151
ASN 1730.0143
LEU 1740.0121
THR 1750.0132
ASN 1760.0114
LEU 1770.0078
GLU 1780.0068
HIS 1790.0047
LEU 1800.0035
ASP 1810.0019
LEU 1820.0053
SER 1830.0052
SER 1840.0064
ASN 1850.0071
LYS 1860.0079
ILE 1870.0047
GLN 1880.0044
SER 1890.0073
ILE 1900.0100
TYR 1910.0126
CYS 1920.0139
THR 1930.0117
ASP 1940.0109
LEU 1950.0141
ARG 1960.0144
VAL 1970.0129
LEU 1980.0153
HIS 1990.0164
GLN 2000.0169
MET 2010.0188
PRO 2020.0157
LEU 2030.0159
LEU 2040.0122
ASN 2050.0100
LEU 2060.0063
SER 2070.0066
LEU 2080.0060
ASP 2090.0055
LEU 2100.0049
SER 2110.0046
LEU 2120.0045
ASN 2130.0035
PRO 2140.0023
MET 2150.0042
ASN 2160.0064
PHE 2170.0098
ILE 2180.0116
GLN 2190.0150
PRO 2200.0176
GLY 2210.0200
ALA 2220.0162
PHE 2230.0167
LYS 2240.0210
GLU 2250.0235
ILE 2260.0202
ARG 2270.0128
LEU 2280.0111
HIS 2290.0114
LYS 2300.0089
LEU 2310.0066
THR 2320.0064
LEU 2330.0045
ARG 2340.0044
ASN 2350.0033
ASN 2360.0018
PHE 2370.0017
ASP 2380.0044
SER 2390.0051
LEU 2400.0039
ASN 2410.0060
VAL 2420.0060
MET 2430.0035
LYS 2440.0053
THR 2450.0086
CYS 2460.0081
ILE 2470.0071
GLN 2480.0102
GLY 2490.0116
LEU 2500.0112
ALA 2510.0127
GLY 2520.0120
LEU 2530.0103
GLU 2540.0107
VAL 2550.0093
HIS 2560.0108
ARG 2570.0075
LEU 2580.0056
VAL 2590.0061
LEU 2600.0047
GLY 2610.0056
GLU 2620.0060
PHE 2630.0066
ARG 2640.0080
ASN 2650.0069
GLU 2660.0056
GLY 2670.0054
ASN 2680.0053
LEU 2690.0041
GLU 2700.0060
LYS 2710.0051
PHE 2720.0059
ASP 2730.0068
LYS 2740.0072
SER 2750.0043
ALA 2760.0042
LEU 2770.0040
GLU 2780.0023
GLY 2790.0024
LEU 2800.0043
CYS 2810.0036
ASN 2820.0045
LEU 2830.0050
THR 2840.0060
ILE 2850.0063
GLU 2860.0082
GLU 2870.0088
PHE 2880.0080
ARG 2890.0082
LEU 2900.0078
ALA 2910.0080
TYR 2920.0056
LEU 2930.0058
ASP 2940.0054
TYR 2950.0058
TYR 2960.0050
LEU 2970.0094
ASP 2980.0109
GLY 2990.0115
ILE 3000.0121
ILE 3010.0147
ASP 3020.0120
LEU 3030.0109
PHE 3040.0113
ASN 3050.0125
CYS 3060.0121
LEU 3070.0103
THR 3080.0111
ASN 3090.0118
VAL 3100.0106
SER 3110.0107
SER 3120.0107
PHE 3130.0100
SER 3140.0091
LEU 3150.0085
VAL 3160.0078
SER 3170.0052
VAL 3180.0063
THR 3190.0061
ILE 3200.0077
GLU 3210.0085
ARG 3220.0102
VAL 3230.0084
LYS 3240.0107
ASP 3250.0127
PHE 3260.0108
SER 3270.0106
TYR 3280.0124
ASN 3290.0129
PHE 3300.0128
GLY 3310.0135
TRP 3320.0093
GLN 3330.0087
HIS 3340.0081
LEU 3350.0074
GLU 3360.0070
LEU 3370.0053
VAL 3380.0048
ASN 3390.0034
CYS 3400.0023
LYS 3410.0026
PHE 3420.0026
GLY 3430.0059
GLN 3440.0048
PHE 3450.0017
PRO 3460.0028
THR 3470.0043
LEU 3480.0047
LYS 3490.0059
LEU 3500.0074
LYS 3510.0080
SER 3520.0061
LEU 3530.0057
LYS 3540.0057
ARG 3550.0058
LEU 3560.0050
THR 3570.0054
PHE 3580.0036
THR 3590.0052
SER 3600.0060
ASN 3610.0039
LYS 3620.0056
GLY 3630.0049
GLY 3640.0056
ASN 3650.0069
ALA 3660.0083
PHE 3670.0068
SER 3680.0052
GLU 3690.0045
VAL 3700.0039
ASP 3710.0037
LEU 3720.0045
PRO 3730.0046
SER 3740.0048
LEU 3750.0049
GLU 3760.0053
PHE 3770.0059
LEU 3780.0054
ASP 3790.0063
LEU 3800.0058
SER 3810.0072
ARG 3820.0089
ASN 3830.0079
GLY 3840.0086
LEU 3850.0081
SER 3860.0085
PHE 3870.0089
LYS 3880.0086
GLY 3890.0081
CYS 3900.0082
CYS 3910.0080
SER 3920.0080
GLN 3930.0075
SER 3940.0070
ASP 3950.0071
PHE 3960.0069
GLY 3970.0075
THR 3980.0073
ILE 3990.0072
SER 4000.0071
LEU 4010.0070
LYS 4020.0068
TYR 4030.0073
LEU 4040.0073
ASP 4050.0079
LEU 4060.0079
SER 4070.0095
PHE 4080.0099
ASN 4090.0098
GLY 4100.0098
VAL 4110.0094
ILE 4120.0090
THR 4130.0085
MET 4140.0070
SER 4150.0075
SER 4160.0066
ASN 4170.0050
PHE 4180.0058
LEU 4190.0060
GLY 4200.0069
LEU 4210.0070
GLU 4220.0054
GLN 4230.0067
LEU 4240.0062
GLU 4250.0059
HIS 4260.0058
LEU 4270.0053
ASP 4280.0061
PHE 4290.0063
GLN 4300.0068
HIS 4310.0077
SER 4320.0082
ASN 4330.0076
LEU 4340.0065
LYS 4350.0071
GLN 4360.0069
MET 4370.0040
SER 4380.0059
GLU 4390.0077
PHE 4400.0057
SER 4410.0031
VAL 4420.0030
PHE 4430.0022
LEU 4440.0022
SER 4450.0025
LEU 4460.0035
ARG 4470.0038
ASN 4480.0054
LEU 4490.0042
ILE 4500.0056
TYR 4510.0042
LEU 4520.0027
ASP 4530.0024
ILE 4540.0011
SER 4550.0016
HIS 4560.0019
THR 4570.0028
HIS 4580.0024
THR 4590.0015
ARG 4600.0031
VAL 4610.0039
ALA 4620.0069
PHE 4630.0069
ASN 4640.0077
GLY 4650.0066
ILE 4660.0044
PHE 4670.0055
ASN 4680.0060
GLY 4690.0055
LEU 4700.0059
SER 4710.0073
SER 4720.0072
LEU 4730.0069
GLU 4740.0073
VAL 4750.0068
LEU 4760.0067
LYS 4770.0052
MET 4780.0049
ALA 4790.0050
GLY 4800.0045
ASN 4810.0045
SER 4820.0058
PHE 4830.0058
GLN 4840.0062
GLU 4850.0081
ASN 4860.0084
PHE 4870.0081
LEU 4880.0076
PRO 4890.0074
ASP 4900.0068
ILE 4910.0078
PHE 4920.0077
THR 4930.0074
GLU 4940.0079
LEU 4950.0079
ARG 4960.0075
ASN 4970.0079
LEU 4980.0081
THR 4990.0082
PHE 5000.0089
LEU 5010.0086
ASP 5020.0084
LEU 5030.0084
SER 5040.0091
GLN 5050.0098
CYS 5060.0094
GLN 5070.0105
LEU 5080.0090
GLU 5090.0093
GLN 5100.0080
LEU 5110.0063
SER 5120.0063
PRO 5130.0042
THR 5140.0033
ALA 5150.0044
PHE 5160.0032
ASN 5170.0017
SER 5180.0026
LEU 5190.0045
SER 5200.0050
SER 5210.0077
LEU 5220.0074
GLN 5230.0096
VAL 5240.0093
LEU 5250.0069
ASN 5260.0083
MET 5270.0068
SER 5280.0091
HIS 5290.0116
ASN 5300.0109
ASN 5310.0115
PHE 5320.0090
PHE 5330.0097
SER 5340.0080
LEU 5350.0053
ASP 5360.0074
THR 5370.0068
PHE 5380.0091
PRO 5390.0048
TYR 5400.0051
LYS 5410.0098
CYS 5420.0076
LEU 5430.0073
ASN 5440.0113
SER 5450.0120
LEU 5460.0096
GLN 5470.0121
VAL 5480.0096
LEU 5490.0058
ASP 5500.0061
TYR 5510.0044
SER 5520.0054
LEU 5530.0078
ASN 5540.0077
HIS 5550.0087
ILE 5560.0066
MET 5570.0059
THR 5580.0080
SER 5590.0093
LYS 5600.0126
LYS 5610.0140
GLN 5620.0161
GLU 5630.0145
LEU 5640.0109
GLN 5650.0151
HIS 5660.0142
PHE 5670.0106
PRO 5680.0129
SER 5690.0167
SER 5700.0160
LEU 5710.0122
ALA 5720.0077
PHE 5730.0055
LEU 5740.0024
ASN 5750.0028
LEU 5760.0026
THR 5770.0020
GLN 5780.0026
ASN 5790.0040
ASP 5800.0046
PHE 5810.0051
ALA 5820.0081
CYS 5830.0049
THR 5840.0092
CYS 5850.0137
GLU 5860.0147
HIS 5870.0044
GLN 5880.0068
SER 5890.0069
PHE 5900.0041
LEU 5910.0055
GLN 5920.0059
TRP 5930.0045
ILE 5940.0064
LYS 5950.0087
ASP 5960.0079
GLN 5970.0036
ARG 5980.0035
GLN 5990.0026
LEU 6000.0026
LEU 6010.0034
VAL 6020.0037
GLU 6030.0042
VAL 6040.0054
GLU 6050.0067
ARG 6060.0058
MET 6070.0080
GLU 6080.0087
CYS 6090.0078
ALA 6100.0109
THR 6110.0123
PRO 6120.0195
SER 6130.0247
ASP 6140.0224
LYS 6150.0145
GLN 6160.0183
GLY 6170.0162
MET 6180.0123
PRO 6190.0114
VAL 6200.0071
LEU 6210.0093
SER 6220.0153
LEU 6230.0068
ASN 6240.0165
ILE 6250.0191
THR 6260.0300
CYS 6270.0342
GLU 10.0163
ALA 20.0220
ALA 30.0219
ALA 40.0147
LYS 50.0095
MET 60.0057
GLN 70.0083
ARG 80.0147
LEU 90.0137
VAL 100.0085
LEU 110.0083
LEU 120.0027
LEU 130.0041
ALA 140.0054
ILE 150.0095
SER 160.0163
LEU 170.0059
LEU 180.0114
LEU 190.0208
TYR 200.0162
GLN 210.0033
ASP 220.0123
LEU 230.0147
PRO 240.0084
VAL 250.0098
ARG 260.0213
SER 270.0111
GLU 280.0188
PHE 290.0164
GLU 300.0049
LEU 310.0044
ASP 320.0068
ARG 330.0054
ILE 340.0087
CYS 350.0129
GLY 360.0081
TYR 370.0056
GLY 380.0079
THR 390.0094
ALA 400.0123
ARG 410.0095
CYS 420.0097
ARG 430.0139
LYS 440.0180
LYS 450.0225
CYS 460.0155
ARG 470.0155
SER 480.0155
GLN 490.0117
GLU 500.0112
TYR 510.0172
ARG 520.0153
ILE 530.0175
GLY 540.0161
ARG 550.0140
CYS 560.0143
PRO 570.0160
ASN 580.0124
THR 590.0140
TYR 600.0117
ALA 610.0115
CYS 620.0114
CYS 630.0115
LEU 640.0116
ARG 650.0117
LYS 660.0055
TRP 670.0031
ASP 680.0030
GLU 690.0026
SER 700.0047
LEU 710.0053
LEU 720.0054
ASN 730.0059
ARG 740.0056
THR 750.0058
LYS 760.0196
PRO 770.0356
GLU 780.0427
ALA 790.0621
ALA 800.0639
ALA 810.0123
LYS 820.0074
LYS 830.0121
GLU 840.0128
MET 850.0194
ASN 860.0190
LEU 870.0124
SER 880.0114
VAL 890.0067
GLY 900.0068
LEU 910.0104
GLY 920.0180
GLY 930.0159
GLY 940.0150
SER 950.0087
ASN 960.0140
LEU 970.0133
SER 980.0176
VAL 990.0166
GLY 1000.0220
LEU 1010.0228
GLY 1020.0304
GLU 1030.0299
ILE 1040.0249
GLY 1050.0234
GLY 1060.0509
GLY 1070.0409
SER 1080.0324
LYS 1090.0157
LEU 1100.0130
LEU 1110.0106
ASP 1120.0119
ILE 1130.0098
ASN 1140.0114
LEU 1150.0113
GLY 1160.0198
ARG 1170.0161
GLY 1180.0127
GLY 1190.0161
GLY 1200.0220
SER 1210.0157
MET 1220.0110
VAL 1230.0097
ASP 1240.0055
LEU 1250.0071
THR 1260.0103
PHE 1270.0083
GLY 1280.0091
GLY 1290.0104
VAL 1300.0095
GLY 1310.0187
GLY 1320.0175
GLY 1330.0162
SER 1340.0149
THR 1350.0142
PHE 1360.0090
THR 1370.0042
PHE 1380.0035
PHE 1390.0071
PRO 1400.0099
LEU 1410.0115
VAL 1420.0036
ILE 1430.0101
GLY 1440.0211
GLY 1450.0334
GLY 1460.0121
SER 1470.0129
ASP 1480.0149
ALA 1490.0112
MET 1500.0116
TYR 1510.0095
LEU 1520.0083
GLY 1530.0091
PHE 1540.0091
ALA 1550.0096
ALA 1560.0161
GLY 1570.0175
GLY 1580.0168
GLY 1590.0167
SER 1600.0152
ALA 1610.0165
GLY 1620.0157
GLY 1630.0137
GLU 1640.0110
ASN 1650.0097
HIS 1660.0087
VAL 1670.0090
ALA 1680.0083
PHE 1690.0086
GLY 1700.0081
PRO 1710.0120
GLY 1720.0107
PRO 1730.0123
GLY 1740.0063
VAL 1750.0099
ASP 1760.0103
LEU 1770.0105
THR 1780.0112
PHE 1790.0117
GLY 1800.0133
GLY 1810.0151
VAL 1820.0156
GLN 1830.0129
PHE 1840.0131
ALA 1850.0122
MET 1860.0044
VAL 1870.0084
ASN 1880.0138
ASN 1890.0190
GLY 1900.0269
PRO 1910.0158
GLY 1920.0217
PRO 1930.0203
GLY 1940.0155
GLU 1950.0194
SER 1960.0323
PHE 1970.0208
THR 1980.0105
ALA 1990.0052
GLN 2000.0154
PRO 2010.0154
ALA 2020.0065
ASP 2030.0175
MET 2040.0182
GLN 2050.0215
ALA 2060.0203
GLY 2070.0204
ILE 2080.0180
LYS 2090.0240
GLY 2100.0546
PRO 2110.0199
GLY 2120.0179
PRO 2130.0221
GLY 2140.0245
GLY 2150.0226
SER 2160.0341
ILE 2170.0245
GLN 2180.0191
VAL 2190.0156
ILE 2200.0141
ASN 2210.0166
GLY 2220.0136
SER 2230.0070
THR 2240.0095
ILE 2250.0146
GLY 2260.0188
THR 2270.0172
GLY 2280.0122
SER 2290.0117
LYS 2300.0068
LYS 2310.0086
THR 2320.0076
ILE 2330.0046
LEU 2340.0052
ILE 2350.0046
TYR 2360.0114
SER 2370.0129
ILE 2380.0170
ILE 2390.0134
GLY 2400.0189
VAL 2410.0141
LYS 2420.0122
LYS 2430.0100
GLY 2440.0122
THR 2450.0145
LEU 2460.0153
ALA 2470.0104
TRP 2480.0082
ALA 2490.0040
ARG 2500.0019
THR 2510.0016
GLY 2520.0032
PHE 2530.0011
SER 2540.0045
PRO 2550.0032
ALA 2560.0021
LYS 2570.0039
LYS 2580.0039
LEU 2590.0021
ASN 2600.0026
ALA 2610.0030
GLY 2620.0023
VAL 2630.0080
VAL 2640.0113
ARG 2650.0098
VAL 2660.0140
PHE 2670.0129
PHE 2680.0245
LEU 2690.0203
ASN 2700.0265
GLN 2710.0118
LYS 2720.0111
LYS 2730.0197
ALA 2740.0143
LYS 2750.0173
ASP 2760.0209
VAL 2770.0162
LEU 2780.0154
ARG 2790.0147
LYS 2800.0119
THR 2810.0235
SER 2820.0338
ARG 2830.0183
PRO 2840.0224
MET 2850.0099
VAL 2860.0336
ASP 2870.0244
LEU 2880.0141
THR 2890.0067
PHE 2900.0131
GLY 2910.0452
GLY 2920.0686

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.