CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 106  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1324
GLU 270.0095
PRO 280.0070
CYS 290.0029
VAL 300.0062
GLU 310.0100
VAL 320.0132
VAL 330.0143
PRO 340.0134
ASN 350.0087
ILE 360.0084
THR 370.0076
TYR 380.0037
GLN 390.0039
CYS 400.0041
MET 410.0070
GLU 420.0090
LEU 430.0085
ASN 440.0090
PHE 450.0076
TYR 460.0081
LYS 470.0097
ILE 480.0074
PRO 490.0051
ASP 500.0063
ASN 510.0056
LEU 520.0039
PRO 530.0030
PHE 540.0028
SER 550.0019
THR 560.0028
LYS 570.0058
ASN 580.0060
LEU 590.0052
ASP 600.0056
LEU 610.0064
SER 620.0073
PHE 630.0082
ASN 640.0078
PRO 650.0080
LEU 660.0069
ARG 670.0044
HIS 680.0037
LEU 690.0039
GLY 700.0042
SER 710.0045
TYR 720.0058
SER 730.0054
PHE 740.0056
PHE 750.0061
SER 760.0061
PHE 770.0059
PRO 780.0070
GLU 790.0065
LEU 800.0063
GLN 810.0069
VAL 820.0053
LEU 830.0049
ASP 840.0046
LEU 850.0044
SER 860.0047
ARG 870.0054
CYS 880.0048
GLU 890.0033
ILE 900.0030
GLN 910.0020
THR 920.0024
ILE 930.0022
GLU 940.0029
ASP 950.0030
GLY 960.0031
ALA 970.0039
TYR 980.0042
GLN 990.0051
SER 1000.0060
LEU 1010.0056
SER 1020.0057
HIS 1030.0063
LEU 1040.0047
SER 1050.0047
THR 1060.0036
LEU 1070.0023
ILE 1080.0029
LEU 1090.0025
THR 1100.0040
GLY 1110.0044
ASN 1120.0040
PRO 1130.0039
ILE 1140.0036
GLN 1150.0043
SER 1160.0037
LEU 1170.0043
ALA 1180.0043
LEU 1190.0040
GLY 1200.0022
ALA 1210.0018
PHE 1220.0013
SER 1230.0015
GLY 1240.0021
LEU 1250.0021
SER 1260.0027
SER 1270.0025
LEU 1280.0024
GLN 1290.0043
LYS 1300.0045
LEU 1310.0040
VAL 1320.0055
ALA 1330.0055
VAL 1340.0060
GLU 1350.0064
THR 1360.0060
ASN 1370.0069
LEU 1380.0059
ALA 1390.0049
SER 1400.0043
LEU 1410.0041
GLU 1420.0039
ASN 1430.0047
PHE 1440.0050
PRO 1450.0054
ILE 1460.0052
GLY 1470.0047
HIS 1480.0042
LEU 1490.0041
LYS 1500.0042
THR 1510.0042
LEU 1520.0057
LYS 1530.0060
GLU 1540.0059
LEU 1550.0059
ASN 1560.0059
VAL 1570.0062
ALA 1580.0064
HIS 1590.0066
ASN 1600.0061
LEU 1610.0054
ILE 1620.0030
GLN 1630.0030
SER 1640.0033
PHE 1650.0044
LYS 1660.0038
LEU 1670.0020
PRO 1680.0022
GLU 1690.0024
TYR 1700.0043
PHE 1710.0042
SER 1720.0044
ASN 1730.0046
LEU 1740.0047
THR 1750.0047
ASN 1760.0049
LEU 1770.0053
GLU 1780.0050
HIS 1790.0049
LEU 1800.0047
ASP 1810.0046
LEU 1820.0052
SER 1830.0060
SER 1840.0053
ASN 1850.0039
LYS 1860.0034
ILE 1870.0053
GLN 1880.0068
SER 1890.0084
ILE 1900.0091
TYR 1910.0100
CYS 1920.0107
THR 1930.0086
ASP 1940.0070
LEU 1950.0081
ARG 1960.0073
VAL 1970.0049
LEU 1980.0071
HIS 1990.0086
GLN 2000.0074
MET 2010.0083
PRO 2020.0090
LEU 2030.0095
LEU 2040.0071
ASN 2050.0070
LEU 2060.0044
SER 2070.0052
LEU 2080.0057
ASP 2090.0066
LEU 2100.0071
SER 2110.0083
LEU 2120.0076
ASN 2130.0070
PRO 2140.0065
MET 2150.0080
ASN 2160.0089
PHE 2170.0110
ILE 2180.0111
GLN 2190.0114
PRO 2200.0128
GLY 2210.0124
ALA 2220.0104
PHE 2230.0108
LYS 2240.0117
GLU 2250.0119
ILE 2260.0111
ARG 2270.0077
LEU 2280.0073
HIS 2290.0072
LYS 2300.0066
LEU 2310.0062
THR 2320.0084
LEU 2330.0088
ARG 2340.0091
ASN 2350.0096
ASN 2360.0096
PHE 2370.0107
ASP 2380.0103
SER 2390.0092
LEU 2400.0084
ASN 2410.0090
VAL 2420.0110
MET 2430.0106
LYS 2440.0098
THR 2450.0111
CYS 2460.0122
ILE 2470.0104
GLN 2480.0099
GLY 2490.0109
LEU 2500.0107
ALA 2510.0096
GLY 2520.0071
LEU 2530.0071
GLU 2540.0071
VAL 2550.0070
HIS 2560.0070
ARG 2570.0039
LEU 2580.0034
VAL 2590.0046
LEU 2600.0045
GLY 2610.0053
GLU 2620.0087
PHE 2630.0091
ARG 2640.0097
ASN 2650.0104
GLU 2660.0103
GLY 2670.0099
ASN 2680.0088
LEU 2690.0080
GLU 2700.0070
LYS 2710.0061
PHE 2720.0035
ASP 2730.0016
LYS 2740.0007
SER 2750.0027
ALA 2760.0045
LEU 2770.0044
GLU 2780.0034
GLY 2790.0044
LEU 2800.0048
CYS 2810.0036
ASN 2820.0048
LEU 2830.0051
THR 2840.0051
ILE 2850.0057
GLU 2860.0061
GLU 2870.0047
PHE 2880.0038
ARG 2890.0037
LEU 2900.0028
ALA 2910.0033
TYR 2920.0046
LEU 2930.0035
ASP 2940.0036
TYR 2950.0022
TYR 2960.0011
LEU 2970.0037
ASP 2980.0040
GLY 2990.0045
ILE 3000.0047
ILE 3010.0049
ASP 3020.0046
LEU 3030.0042
PHE 3040.0053
ASN 3050.0054
CYS 3060.0050
LEU 3070.0053
THR 3080.0062
ASN 3090.0066
VAL 3100.0065
SER 3110.0077
SER 3120.0073
PHE 3130.0066
SER 3140.0064
LEU 3150.0058
VAL 3160.0057
SER 3170.0044
VAL 3180.0039
THR 3190.0039
ILE 3200.0043
GLU 3210.0045
ARG 3220.0045
VAL 3230.0048
LYS 3240.0044
ASP 3250.0053
PHE 3260.0056
SER 3270.0056
TYR 3280.0063
ASN 3290.0068
PHE 3300.0074
GLY 3310.0080
TRP 3320.0070
GLN 3330.0066
HIS 3340.0068
LEU 3350.0070
GLU 3360.0073
LEU 3370.0048
VAL 3380.0051
ASN 3390.0049
CYS 3400.0041
LYS 3410.0033
PHE 3420.0046
GLY 3430.0037
GLN 3440.0033
PHE 3450.0037
PRO 3460.0035
THR 3470.0038
LEU 3480.0045
LYS 3490.0039
LEU 3500.0052
LYS 3510.0048
SER 3520.0047
LEU 3530.0047
LYS 3540.0047
ARG 3550.0054
LEU 3560.0052
THR 3570.0045
PHE 3580.0036
THR 3590.0047
SER 3600.0053
ASN 3610.0040
LYS 3620.0058
GLY 3630.0055
GLY 3640.0050
ASN 3650.0049
ALA 3660.0048
PHE 3670.0077
SER 3680.0055
GLU 3690.0048
VAL 3700.0042
ASP 3710.0029
LEU 3720.0034
PRO 3730.0022
SER 3740.0028
LEU 3750.0040
GLU 3760.0047
PHE 3770.0055
LEU 3780.0053
ASP 3790.0059
LEU 3800.0057
SER 3810.0067
ARG 3820.0064
ASN 3830.0069
GLY 3840.0070
LEU 3850.0070
SER 3860.0071
PHE 3870.0093
LYS 3880.0094
GLY 3890.0097
CYS 3900.0098
CYS 3910.0102
SER 3920.0094
GLN 3930.0090
SER 3940.0082
ASP 3950.0082
PHE 3960.0082
GLY 3970.0065
THR 3980.0068
ILE 3990.0072
SER 4000.0073
LEU 4010.0077
LYS 4020.0085
TYR 4030.0083
LEU 4040.0082
ASP 4050.0080
LEU 4060.0079
SER 4070.0060
PHE 4080.0065
ASN 4090.0072
GLY 4100.0073
VAL 4110.0072
ILE 4120.0087
THR 4130.0092
MET 4140.0087
SER 4150.0103
SER 4160.0102
ASN 4170.0083
PHE 4180.0089
LEU 4190.0099
GLY 4200.0106
LEU 4210.0097
GLU 4220.0086
GLN 4230.0091
LEU 4240.0085
GLU 4250.0079
HIS 4260.0078
LEU 4270.0072
ASP 4280.0063
PHE 4290.0051
GLN 4300.0041
HIS 4310.0036
SER 4320.0061
ASN 4330.0053
LEU 4340.0052
LYS 4350.0066
GLN 4360.0077
MET 4370.0050
SER 4380.0066
GLU 4390.0094
PHE 4400.0085
SER 4410.0057
VAL 4420.0059
PHE 4430.0047
LEU 4440.0054
SER 4450.0066
LEU 4460.0053
ARG 4470.0036
ASN 4480.0049
LEU 4490.0044
ILE 4500.0052
TYR 4510.0052
LEU 4520.0028
ASP 4530.0034
ILE 4540.0016
SER 4550.0035
HIS 4560.0033
THR 4570.0019
HIS 4580.0014
THR 4590.0015
ARG 4600.0026
VAL 4610.0031
ALA 4620.0060
PHE 4630.0064
ASN 4640.0070
GLY 4650.0058
ILE 4660.0033
PHE 4670.0029
ASN 4680.0042
GLY 4690.0027
LEU 4700.0020
SER 4710.0036
SER 4720.0039
LEU 4730.0044
GLU 4740.0066
VAL 4750.0065
LEU 4760.0054
LYS 4770.0055
MET 4780.0051
ALA 4790.0066
GLY 4800.0063
ASN 4810.0052
SER 4820.0058
PHE 4830.0058
GLN 4840.0058
GLU 4850.0071
ASN 4860.0075
PHE 4870.0074
LEU 4880.0074
PRO 4890.0076
ASP 4900.0077
ILE 4910.0081
PHE 4920.0077
THR 4930.0085
GLU 4940.0075
LEU 4950.0075
ARG 4960.0087
ASN 4970.0085
LEU 4980.0083
THR 4990.0084
PHE 5000.0081
LEU 5010.0079
ASP 5020.0076
LEU 5030.0076
SER 5040.0077
GLN 5050.0077
CYS 5060.0077
GLN 5070.0075
LEU 5080.0069
GLU 5090.0066
GLN 5100.0064
LEU 5110.0061
SER 5120.0074
PRO 5130.0060
THR 5140.0068
ALA 5150.0074
PHE 5160.0067
ASN 5170.0071
SER 5180.0080
LEU 5190.0078
SER 5200.0072
SER 5210.0079
LEU 5220.0068
GLN 5230.0062
VAL 5240.0062
LEU 5250.0057
ASN 5260.0058
MET 5270.0047
SER 5280.0047
HIS 5290.0054
ASN 5300.0057
ASN 5310.0058
PHE 5320.0029
PHE 5330.0039
SER 5340.0049
LEU 5350.0043
ASP 5360.0051
THR 5370.0037
PHE 5380.0050
PRO 5390.0036
TYR 5400.0010
LYS 5410.0028
CYS 5420.0020
LEU 5430.0020
ASN 5440.0021
SER 5450.0039
LEU 5460.0034
GLN 5470.0047
VAL 5480.0039
LEU 5490.0019
ASP 5500.0018
TYR 5510.0005
SER 5520.0017
LEU 5530.0009
ASN 5540.0011
HIS 5550.0025
ILE 5560.0039
MET 5570.0062
THR 5580.0075
SER 5590.0078
LYS 5600.0087
LYS 5610.0094
GLN 5620.0106
GLU 5630.0096
LEU 5640.0086
GLN 5650.0108
HIS 5660.0089
PHE 5670.0056
PRO 5680.0054
SER 5690.0073
SER 5700.0066
LEU 5710.0062
ALA 5720.0065
PHE 5730.0056
LEU 5740.0047
ASN 5750.0042
LEU 5760.0045
THR 5770.0048
GLN 5780.0043
ASN 5790.0047
ASP 5800.0053
PHE 5810.0067
ALA 5820.0083
CYS 5830.0020
THR 5840.0099
CYS 5850.0163
GLU 5860.0187
HIS 5870.0076
GLN 5880.0050
SER 5890.0044
PHE 5900.0055
LEU 5910.0025
GLN 5920.0021
TRP 5930.0051
ILE 5940.0059
LYS 5950.0053
ASP 5960.0056
GLN 5970.0071
ARG 5980.0066
GLN 5990.0073
LEU 6000.0064
LEU 6010.0055
VAL 6020.0048
GLU 6030.0047
VAL 6040.0048
GLU 6050.0052
ARG 6060.0055
MET 6070.0075
GLU 6080.0083
CYS 6090.0071
ALA 6100.0100
THR 6110.0092
PRO 6120.0066
SER 6130.0123
ASP 6140.0111
LYS 6150.0090
GLN 6160.0131
GLY 6170.0124
MET 6180.0101
PRO 6190.0097
VAL 6200.0064
LEU 6210.0060
SER 6220.0158
LEU 6230.0076
ASN 6240.0178
ILE 6250.0167
THR 6260.0288
CYS 6270.0391
GLU 10.0084
ALA 20.0056
ALA 30.0069
ALA 40.0082
LYS 50.0048
MET 60.0038
GLN 70.0051
ARG 80.0067
LEU 90.0061
VAL 100.0057
LEU 110.0026
LEU 120.0023
LEU 130.0033
ALA 140.0022
ILE 150.0013
SER 160.0029
LEU 170.0022
LEU 180.0021
LEU 190.0028
TYR 200.0025
GLN 210.0036
ASP 220.0038
LEU 230.0042
PRO 240.0028
VAL 250.0038
ARG 260.0198
SER 270.0111
GLU 280.0149
PHE 290.0138
GLU 300.0129
LEU 310.0081
ASP 320.0074
ARG 330.0099
ILE 340.0135
CYS 350.0161
GLY 360.0111
TYR 370.0073
GLY 380.0092
THR 390.0117
ALA 400.0144
ARG 410.0121
CYS 420.0126
ARG 430.0161
LYS 440.0184
LYS 450.0208
CYS 460.0170
ARG 470.0154
SER 480.0137
GLN 490.0097
GLU 500.0106
TYR 510.0130
ARG 520.0134
ILE 530.0170
GLY 540.0188
ARG 550.0204
CYS 560.0161
PRO 570.0155
ASN 580.0148
THR 590.0153
TYR 600.0159
ALA 610.0165
CYS 620.0164
CYS 630.0139
LEU 640.0129
ARG 650.0111
LYS 660.0097
TRP 670.0107
ASP 680.0101
GLU 690.0111
SER 700.0116
LEU 710.0115
LEU 720.0125
ASN 730.0107
ARG 740.0083
THR 750.0091
LYS 760.0110
PRO 770.0096
GLU 780.0113
ALA 790.0134
ALA 800.0107
ALA 810.0283
LYS 820.0189
LYS 830.0195
GLU 840.0131
MET 850.0098
ASN 860.0101
LEU 870.0074
SER 880.0085
VAL 890.0081
GLY 900.0100
LEU 910.0147
GLY 920.0233
GLY 930.0211
GLY 940.0205
SER 950.0111
ASN 960.0141
LEU 970.0094
SER 980.0121
VAL 990.0117
GLY 1000.0151
LEU 1010.0097
GLY 1020.0086
GLU 1030.0104
ILE 1040.0125
GLY 1050.0170
GLY 1060.0347
GLY 1070.0236
SER 1080.0179
LYS 1090.0090
LEU 1100.0131
LEU 1110.0167
ASP 1120.0150
ILE 1130.0147
ASN 1140.0137
LEU 1150.0130
GLY 1160.0210
ARG 1170.0176
GLY 1180.0166
GLY 1190.0199
GLY 1200.0243
SER 1210.0172
MET 1220.0106
VAL 1230.0086
ASP 1240.0026
LEU 1250.0047
THR 1260.0069
PHE 1270.0047
GLY 1280.0087
GLY 1290.0106
VAL 1300.0127
GLY 1310.0226
GLY 1320.0185
GLY 1330.0116
SER 1340.0092
THR 1350.0035
PHE 1360.0035
THR 1370.0073
PHE 1380.0082
PHE 1390.0115
PRO 1400.0129
LEU 1410.0138
VAL 1420.0058
ILE 1430.0148
GLY 1440.0296
GLY 1450.0436
GLY 1460.0565
SER 1470.0470
ASP 1480.0339
ALA 1490.0269
MET 1500.0117
TYR 1510.0166
LEU 1520.0118
GLY 1530.0108
PHE 1540.0091
ALA 1550.0123
ALA 1560.0133
GLY 1570.0092
GLY 1580.0063
GLY 1590.0026
SER 1600.0045
ALA 1610.0108
GLY 1620.0121
GLY 1630.0119
GLU 1640.0100
ASN 1650.0110
HIS 1660.0103
VAL 1670.0110
ALA 1680.0096
PHE 1690.0098
GLY 1700.0093
PRO 1710.0129
GLY 1720.0131
PRO 1730.0129
GLY 1740.0021
VAL 1750.0135
ASP 1760.0149
LEU 1770.0133
THR 1780.0128
PHE 1790.0119
GLY 1800.0121
GLY 1810.0116
VAL 1820.0111
GLN 1830.0122
PHE 1840.0113
ALA 1850.0127
MET 1860.0102
VAL 1870.0117
ASN 1880.0122
ASN 1890.0160
GLY 1900.0249
PRO 1910.0157
GLY 1920.0185
PRO 1930.0175
GLY 1940.0156
GLU 1950.0185
SER 1960.0237
PHE 1970.0139
THR 1980.0054
ALA 1990.0083
GLN 2000.0167
PRO 2010.0088
ALA 2020.0052
ASP 2030.0147
MET 2040.0121
GLN 2050.0182
ALA 2060.0083
GLY 2070.0115
ILE 2080.0164
LYS 2090.0179
GLY 2100.0401
PRO 2110.0184
GLY 2120.0165
PRO 2130.0160
GLY 2140.0180
GLY 2150.0159
SER 2160.0271
ILE 2170.0189
GLN 2180.0075
VAL 2190.0065
ILE 2200.0146
ASN 2210.0389
GLY 2220.0228
SER 2230.0051
THR 2240.0161
ILE 2250.0364
GLY 2260.0441
THR 2270.0373
GLY 2280.0227
SER 2290.0236
LYS 2300.0287
LYS 2310.0317
THR 2320.0323
ILE 2330.0168
LEU 2340.0162
ILE 2350.0119
TYR 2360.0171
SER 2370.0175
ILE 2380.0188
ILE 2390.0155
GLY 2400.0199
VAL 2410.0077
LYS 2420.0080
LYS 2430.0065
GLY 2440.0049
THR 2450.0056
LEU 2460.0070
ALA 2470.0042
TRP 2480.0025
ALA 2490.0057
ARG 2500.0077
THR 2510.0183
GLY 2520.0337
PHE 2530.0177
SER 2540.0290
PRO 2550.0263
ALA 2560.0441
LYS 2570.0186
LYS 2580.0098
LEU 2590.0087
ASN 2600.0221
ALA 2610.0232
GLY 2620.0342
VAL 2630.0218
VAL 2640.0248
ARG 2650.0284
VAL 2660.0137
PHE 2670.0145
PHE 2680.0124
LEU 2690.0186
ASN 2700.0197
GLN 2710.0118
LYS 2720.0113
LYS 2730.0162
ALA 2740.0171
LYS 2750.0147
ASP 2760.0146
VAL 2770.0164
LEU 2780.0184
ARG 2790.0203
LYS 2800.0284
THR 2810.0327
SER 2820.0251
ARG 2830.0300
PRO 2840.0298
MET 2850.0449
VAL 2860.0356
ASP 2870.0274
LEU 2880.0357
THR 2890.0333
PHE 2900.0236
GLY 2910.0722
GLY 2920.1324

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.