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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0706
GLU 270.0174
PRO 280.0169
CYS 290.0156
VAL 300.0153
GLU 310.0154
VAL 320.0142
VAL 330.0144
PRO 340.0156
ASN 350.0154
ILE 360.0139
THR 370.0134
TYR 380.0140
GLN 390.0135
CYS 400.0142
MET 410.0133
GLU 420.0138
LEU 430.0152
ASN 440.0156
PHE 450.0156
TYR 460.0161
LYS 470.0159
ILE 480.0153
PRO 490.0160
ASP 500.0168
ASN 510.0174
LEU 520.0162
PRO 530.0161
PHE 540.0155
SER 550.0145
THR 560.0139
LYS 570.0124
ASN 580.0120
LEU 590.0126
ASP 600.0122
LEU 610.0129
SER 620.0120
PHE 630.0125
ASN 640.0138
PRO 650.0144
LEU 660.0143
ARG 670.0142
HIS 680.0144
LEU 690.0139
GLY 700.0147
SER 710.0145
TYR 720.0143
SER 730.0144
PHE 740.0139
PHE 750.0147
SER 760.0152
PHE 770.0140
PRO 780.0134
GLU 790.0128
LEU 800.0121
GLN 810.0107
VAL 820.0104
LEU 830.0111
ASP 840.0108
LEU 850.0113
SER 860.0105
ARG 870.0112
CYS 880.0125
GLU 890.0128
ILE 900.0127
GLN 910.0130
THR 920.0133
ILE 930.0128
GLU 940.0136
ASP 950.0131
GLY 960.0129
ALA 970.0130
TYR 980.0122
GLN 990.0124
SER 1000.0128
LEU 1010.0117
SER 1020.0108
HIS 1030.0105
LEU 1040.0101
SER 1050.0088
THR 1060.0088
LEU 1070.0094
ILE 1080.0093
LEU 1090.0098
THR 1100.0091
GLY 1110.0098
ASN 1120.0109
PRO 1130.0114
ILE 1140.0116
GLN 1150.0124
SER 1160.0128
LEU 1170.0118
ALA 1180.0122
LEU 1190.0113
GLY 1200.0117
ALA 1210.0116
PHE 1220.0104
SER 1230.0108
GLY 1240.0108
LEU 1250.0099
SER 1260.0092
SER 1270.0087
LEU 1280.0083
GLN 1290.0072
LYS 1300.0072
LEU 1310.0077
VAL 1320.0077
ALA 1330.0083
VAL 1340.0077
GLU 1350.0084
THR 1360.0094
ASN 1370.0097
LEU 1380.0091
ALA 1390.0092
SER 1400.0087
LEU 1410.0080
GLU 1420.0088
ASN 1430.0097
PHE 1440.0091
PRO 1450.0094
ILE 1460.0084
GLY 1470.0080
HIS 1480.0082
LEU 1490.0078
LYS 1500.0068
THR 1510.0068
LEU 1520.0064
LYS 1530.0056
GLU 1540.0057
LEU 1550.0062
ASN 1560.0063
VAL 1570.0069
ALA 1580.0064
HIS 1590.0070
ASN 1600.0078
LEU 1610.0082
ILE 1620.0076
GLN 1630.0077
SER 1640.0073
PHE 1650.0062
LYS 1660.0067
LEU 1670.0064
PRO 1680.0073
GLU 1690.0072
TYR 1700.0072
PHE 1710.0062
SER 1720.0056
ASN 1730.0062
LEU 1740.0058
THR 1750.0049
ASN 1760.0049
LEU 1770.0048
GLU 1780.0041
HIS 1790.0044
LEU 1800.0048
ASP 1810.0051
LEU 1820.0055
SER 1830.0051
SER 1840.0058
ASN 1850.0065
LYS 1860.0069
ILE 1870.0064
GLN 1880.0065
SER 1890.0063
ILE 1900.0059
TYR 1910.0063
CYS 1920.0061
THR 1930.0067
ASP 1940.0063
LEU 1950.0054
ARG 1960.0058
VAL 1970.0055
LEU 1980.0045
HIS 1990.0044
GLN 2000.0046
MET 2010.0040
PRO 2020.0028
LEU 2030.0026
LEU 2040.0032
ASN 2050.0028
LEU 2060.0032
SER 2070.0032
LEU 2080.0036
ASP 2090.0038
LEU 2100.0042
SER 2110.0040
LEU 2120.0047
ASN 2130.0052
PRO 2140.0056
MET 2150.0053
ASN 2160.0058
PHE 2170.0059
ILE 2180.0053
GLN 2190.0059
PRO 2200.0055
GLY 2210.0052
ALA 2220.0050
PHE 2230.0039
LYS 2240.0040
GLU 2250.0033
ILE 2260.0031
ARG 2270.0021
LEU 2280.0022
HIS 2290.0020
LYS 2300.0021
LEU 2310.0024
THR 2320.0026
LEU 2330.0029
ARG 2340.0029
ASN 2350.0034
ASN 2360.0040
PHE 2370.0041
ASP 2380.0044
SER 2390.0042
LEU 2400.0039
ASN 2410.0047
VAL 2420.0048
MET 2430.0039
LYS 2440.0041
THR 2450.0048
CYS 2460.0044
ILE 2470.0035
GLN 2480.0043
GLY 2490.0045
LEU 2500.0036
ALA 2510.0037
GLY 2520.0033
LEU 2530.0026
GLU 2540.0018
VAL 2550.0014
HIS 2560.0013
ARG 2570.0013
LEU 2580.0013
VAL 2590.0015
LEU 2600.0018
GLY 2610.0019
GLU 2620.0025
PHE 2630.0029
ARG 2640.0026
ASN 2650.0035
GLU 2660.0038
GLY 2670.0037
ASN 2680.0031
LEU 2690.0031
GLU 2700.0034
LYS 2710.0032
PHE 2720.0028
ASP 2730.0032
LYS 2740.0033
SER 2750.0036
ALA 2760.0030
LEU 2770.0027
GLU 2780.0034
GLY 2790.0033
LEU 2800.0025
CYS 2810.0030
ASN 2820.0033
LEU 2830.0025
THR 2840.0019
ILE 2850.0015
GLU 2860.0016
GLU 2870.0015
PHE 2880.0013
ARG 2890.0012
LEU 2900.0012
ALA 2910.0013
TYR 2920.0015
LEU 2930.0015
ASP 2940.0016
TYR 2950.0018
TYR 2960.0016
LEU 2970.0021
ASP 2980.0026
GLY 2990.0027
ILE 3000.0025
ILE 3010.0031
ASP 3020.0034
LEU 3030.0027
PHE 3040.0025
ASN 3050.0030
CYS 3060.0027
LEU 3070.0023
THR 3080.0029
ASN 3090.0028
VAL 3100.0022
SER 3110.0025
SER 3120.0023
PHE 3130.0020
SER 3140.0017
LEU 3150.0015
VAL 3160.0013
SER 3170.0012
VAL 3180.0013
THR 3190.0015
ILE 3200.0020
GLU 3210.0023
ARG 3220.0028
VAL 3230.0028
LYS 3240.0033
ASP 3250.0031
PHE 3260.0030
SER 3270.0036
TYR 3280.0036
ASN 3290.0037
PHE 3300.0032
GLY 3310.0033
TRP 3320.0031
GLN 3330.0033
HIS 3340.0029
LEU 3350.0026
GLU 3360.0022
LEU 3370.0021
VAL 3380.0019
ASN 3390.0017
CYS 3400.0017
LYS 3410.0018
PHE 3420.0021
GLY 3430.0023
GLN 3440.0026
PHE 3450.0027
PRO 3460.0027
THR 3470.0033
LEU 3480.0034
LYS 3490.0038
LEU 3500.0038
LYS 3510.0042
SER 3520.0043
LEU 3530.0039
LYS 3540.0040
ARG 3550.0035
LEU 3560.0031
THR 3570.0027
PHE 3580.0026
THR 3590.0023
SER 3600.0020
ASN 3610.0021
LYS 3620.0019
GLY 3630.0020
GLY 3640.0021
ASN 3650.0021
ALA 3660.0022
PHE 3670.0025
SER 3680.0029
GLU 3690.0033
VAL 3700.0035
ASP 3710.0039
LEU 3720.0042
PRO 3730.0046
SER 3740.0046
LEU 3750.0041
GLU 3760.0041
PHE 3770.0038
LEU 3780.0034
ASP 3790.0031
LEU 3800.0028
SER 3810.0024
ARG 3820.0023
ASN 3830.0023
GLY 3840.0018
LEU 3850.0020
SER 3860.0018
PHE 3870.0019
LYS 3880.0021
GLY 3890.0022
CYS 3900.0018
CYS 3910.0020
SER 3920.0028
GLN 3930.0034
SER 3940.0036
ASP 3950.0032
PHE 3960.0036
GLY 3970.0043
THR 3980.0043
ILE 3990.0044
SER 4000.0044
LEU 4010.0039
LYS 4020.0040
TYR 4030.0036
LEU 4040.0031
ASP 4050.0028
LEU 4060.0022
SER 4070.0021
PHE 4080.0021
ASN 4090.0017
GLY 4100.0013
VAL 4110.0012
ILE 4120.0013
THR 4130.0017
MET 4140.0016
SER 4150.0022
SER 4160.0020
ASN 4170.0014
PHE 4180.0019
LEU 4190.0026
GLY 4200.0034
LEU 4210.0031
GLU 4220.0030
GLN 4230.0038
LEU 4240.0034
GLU 4250.0038
HIS 4260.0036
LEU 4270.0027
ASP 4280.0026
PHE 4290.0019
GLN 4300.0024
HIS 4310.0021
SER 4320.0014
ASN 4330.0012
LEU 4340.0013
LYS 4350.0020
GLN 4360.0026
MET 4370.0027
SER 4380.0039
GLU 4390.0041
PHE 4400.0034
SER 4410.0025
VAL 4420.0015
PHE 4430.0011
LEU 4440.0011
SER 4450.0014
LEU 4460.0019
ARG 4470.0023
ASN 4480.0035
LEU 4490.0034
ILE 4500.0045
TYR 4510.0044
LEU 4520.0033
ASP 4530.0034
ILE 4540.0026
SER 4550.0036
HIS 4560.0032
THR 4570.0021
HIS 4580.0030
THR 4590.0035
ARG 4600.0052
VAL 4610.0054
ALA 4620.0063
PHE 4630.0056
ASN 4640.0058
GLY 4650.0043
ILE 4660.0035
PHE 4670.0030
ASN 4680.0025
GLY 4690.0015
LEU 4700.0026
SER 4710.0033
SER 4720.0042
LEU 4730.0044
GLU 4740.0060
VAL 4750.0059
LEU 4760.0050
LYS 4770.0052
MET 4780.0047
ALA 4790.0057
GLY 4800.0054
ASN 4810.0049
SER 4820.0065
PHE 4830.0074
GLN 4840.0084
GLU 4850.0102
ASN 4860.0097
PHE 4870.0100
LEU 4880.0089
PRO 4890.0085
ASP 4900.0077
ILE 4910.0059
PHE 4920.0058
THR 4930.0059
GLU 4940.0043
LEU 4950.0048
ARG 4960.0060
ASN 4970.0063
LEU 4980.0067
THR 4990.0083
PHE 5000.0081
LEU 5010.0074
ASP 5020.0074
LEU 5030.0075
SER 5040.0082
GLN 5050.0078
CYS 5060.0074
GLN 5070.0090
LEU 5080.0098
GLU 5090.0117
GLN 5100.0120
LEU 5110.0112
SER 5120.0110
PRO 5130.0121
THR 5140.0105
ALA 5150.0091
PHE 5160.0091
ASN 5170.0094
SER 5180.0079
LEU 5190.0082
SER 5200.0094
SER 5210.0093
LEU 5220.0094
GLN 5230.0109
VAL 5240.0106
LEU 5250.0100
ASN 5260.0099
MET 5270.0104
SER 5280.0109
HIS 5290.0104
ASN 5300.0105
ASN 5310.0120
PHE 5320.0135
PHE 5330.0157
SER 5340.0164
LEU 5350.0160
ASP 5360.0156
THR 5370.0152
PHE 5380.0145
PRO 5390.0124
TYR 5400.0126
LYS 5410.0135
CYS 5420.0118
LEU 5430.0116
ASN 5440.0124
SER 5450.0120
LEU 5460.0124
GLN 5470.0138
VAL 5480.0133
LEU 5490.0129
ASP 5500.0126
TYR 5510.0132
SER 5520.0137
LEU 5530.0131
ASN 5540.0133
HIS 5550.0151
ILE 5560.0163
MET 5570.0186
THR 5580.0194
SER 5590.0187
LYS 5600.0191
LYS 5610.0185
GLN 5620.0198
GLU 5630.0180
LEU 5640.0185
GLN 5650.0187
HIS 5660.0166
PHE 5670.0158
PRO 5680.0150
SER 5690.0164
SER 5700.0153
LEU 5710.0154
ALA 5720.0167
PHE 5730.0160
LEU 5740.0158
ASN 5750.0154
LEU 5760.0162
THR 5770.0165
GLN 5780.0159
ASN 5790.0163
ASP 5800.0177
PHE 5810.0195
ALA 5820.0213
CYS 5830.0232
THR 5840.0248
CYS 5850.0262
GLU 5860.0249
HIS 5870.0231
GLN 5880.0246
SER 5890.0235
PHE 5900.0214
LEU 5910.0226
GLN 5920.0238
TRP 5930.0219
ILE 5940.0212
LYS 5950.0232
ASP 5960.0230
GLN 5970.0212
ARG 5980.0214
GLN 5990.0209
LEU 6000.0187
LEU 6010.0186
VAL 6020.0180
GLU 6030.0189
VAL 6040.0204
GLU 6050.0210
ARG 6060.0188
MET 6070.0192
GLU 6080.0202
CYS 6090.0211
ALA 6100.0200
THR 6110.0212
PRO 6120.0236
SER 6130.0233
ASP 6140.0252
LYS 6150.0243
GLN 6160.0221
GLY 6170.0215
MET 6180.0231
PRO 6190.0225
VAL 6200.0224
LEU 6210.0236
SER 6220.0254
LEU 6230.0256
ASN 6240.0277
ILE 6250.0274
THR 6260.0295
CYS 6270.0300
GLU 10.0239
ALA 20.0226
ALA 30.0221
ALA 40.0204
LYS 50.0186
MET 60.0179
GLN 70.0171
ARG 80.0152
LEU 90.0138
VAL 100.0137
LEU 110.0122
LEU 120.0105
LEU 130.0100
ALA 140.0100
ILE 150.0082
SER 160.0071
LEU 170.0076
LEU 180.0073
LEU 190.0060
TYR 200.0061
GLN 210.0068
ASP 220.0061
LEU 230.0055
PRO 240.0061
VAL 250.0066
ARG 260.0062
SER 270.0053
GLU 280.0054
PHE 290.0047
GLU 300.0040
LEU 310.0041
ASP 320.0045
ARG 330.0037
ILE 340.0033
CYS 350.0037
GLY 360.0030
TYR 370.0027
GLY 380.0025
THR 390.0020
ALA 400.0029
ARG 410.0036
CYS 420.0043
ARG 430.0045
LYS 440.0053
LYS 450.0056
CYS 460.0056
ARG 470.0054
SER 480.0061
GLN 490.0057
GLU 500.0055
TYR 510.0059
ARG 520.0061
ILE 530.0060
GLY 540.0064
ARG 550.0064
CYS 560.0056
PRO 570.0062
ASN 580.0061
THR 590.0066
TYR 600.0058
ALA 610.0057
CYS 620.0051
CYS 630.0048
LEU 640.0045
ARG 650.0044
LYS 660.0055
TRP 670.0051
ASP 680.0052
GLU 690.0061
SER 700.0057
LEU 710.0049
LEU 720.0056
ASN 730.0063
ARG 740.0056
THR 750.0053
LYS 760.0064
PRO 770.0065
GLU 780.0074
ALA 790.0079
ALA 800.0069
ALA 810.0054
LYS 820.0050
LYS 830.0034
GLU 840.0033
MET 850.0026
ASN 860.0028
LEU 870.0033
SER 880.0033
VAL 890.0046
GLY 900.0047
LEU 910.0060
GLY 920.0064
GLY 930.0061
GLY 940.0047
SER 950.0051
ASN 960.0043
LEU 970.0051
SER 980.0043
VAL 990.0048
GLY 1000.0046
LEU 1010.0049
GLY 1020.0057
GLU 1030.0057
ILE 1040.0069
GLY 1050.0070
GLY 1060.0063
GLY 1070.0065
SER 1080.0059
LYS 1090.0061
LEU 1100.0069
LEU 1110.0065
ASP 1120.0076
ILE 1130.0073
ASN 1140.0085
LEU 1150.0085
GLY 1160.0091
ARG 1170.0102
GLY 1180.0095
GLY 1190.0098
GLY 1200.0091
SER 1210.0079
MET 1220.0072
VAL 1230.0063
ASP 1240.0051
LEU 1250.0045
THR 1260.0030
PHE 1270.0023
GLY 1280.0008
GLY 1290.0007
VAL 1300.0006
GLY 1310.0009
GLY 1320.0006
GLY 1330.0009
SER 1340.0018
THR 1350.0028
PHE 1360.0037
THR 1370.0049
PHE 1380.0060
PHE 1390.0072
PRO 1400.0083
LEU 1410.0091
VAL 1420.0107
ILE 1430.0112
GLY 1440.0129
GLY 1450.0136
GLY 1460.0130
SER 1470.0119
ASP 1480.0106
ALA 1490.0099
MET 1500.0087
TYR 1510.0082
LEU 1520.0069
GLY 1530.0065
PHE 1540.0053
ALA 1550.0049
ALA 1560.0034
GLY 1570.0030
GLY 1580.0021
GLY 1590.0020
SER 1600.0018
ALA 1610.0033
GLY 1620.0031
GLY 1630.0035
GLU 1640.0031
ASN 1650.0040
HIS 1660.0047
VAL 1670.0059
ALA 1680.0067
PHE 1690.0079
GLY 1700.0088
PRO 1710.0106
GLY 1720.0117
PRO 1730.0124
GLY 1740.0110
VAL 1750.0091
ASP 1760.0082
LEU 1770.0072
THR 1780.0064
PHE 1790.0056
GLY 1800.0055
GLY 1810.0069
VAL 1820.0077
GLN 1830.0083
PHE 1840.0088
ALA 1850.0101
MET 1860.0106
VAL 1870.0133
ASN 1880.0150
ASN 1890.0162
GLY 1900.0183
PRO 1910.0290
GLY 1920.0406
PRO 1930.0514
GLY 1940.0577
GLU 1950.0478
SER 1960.0495
PHE 1970.0412
THR 1980.0449
ALA 1990.0408
GLN 2000.0393
PRO 2010.0423
ALA 2020.0382
ASP 2030.0276
MET 2040.0312
GLN 2050.0344
ALA 2060.0289
GLY 2070.0375
ILE 2080.0333
LYS 2090.0423
GLY 2100.0492
PRO 2110.0487
GLY 2120.0656
PRO 2130.0706
GLY 2140.0631
GLY 2150.0473
SER 2160.0349
ILE 2170.0232
GLN 2180.0181
VAL 2190.0100
ILE 2200.0081
ASN 2210.0124
GLY 2220.0127
SER 2230.0144
THR 2240.0149
ILE 2250.0154
GLY 2260.0166
THR 2270.0172
GLY 2280.0173
SER 2290.0166
LYS 2300.0156
LYS 2310.0139
THR 2320.0129
ILE 2330.0110
LEU 2340.0101
ILE 2350.0082
TYR 2360.0063
SER 2370.0053
ILE 2380.0038
ILE 2390.0041
GLY 2400.0026
VAL 2410.0022
LYS 2420.0021
LYS 2430.0020
GLY 2440.0021
THR 2450.0022
LEU 2460.0035
ALA 2470.0047
TRP 2480.0063
ALA 2490.0073
ARG 2500.0089
THR 2510.0097
GLY 2520.0118
PHE 2530.0120
SER 2540.0141
PRO 2550.0145
ALA 2560.0146
LYS 2570.0156
LYS 2580.0150
LEU 2590.0142
ASN 2600.0140
ALA 2610.0133
GLY 2620.0120
VAL 2630.0109
VAL 2640.0099
ARG 2650.0089
VAL 2660.0072
PHE 2670.0066
PHE 2680.0063
LEU 2690.0058
ASN 2700.0052
GLN 2710.0035
LYS 2720.0035
LYS 2730.0045
ALA 2740.0037
LYS 2750.0027
ASP 2760.0042
VAL 2770.0048
LEU 2780.0030
ARG 2790.0039
LYS 2800.0060
THR 2810.0068
SER 2820.0065
ARG 2830.0076
PRO 2840.0083
MET 2850.0082
VAL 2860.0103
ASP 2870.0124
LEU 2880.0132
THR 2890.0154
PHE 2900.0180
GLY 2910.0208
GLY 2920.0221

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.