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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 12  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0853
GLU 270.0182
PRO 280.0173
CYS 290.0161
VAL 300.0160
GLU 310.0166
VAL 320.0153
VAL 330.0157
PRO 340.0173
ASN 350.0172
ILE 360.0154
THR 370.0144
TYR 380.0148
GLN 390.0139
CYS 400.0142
MET 410.0128
GLU 420.0127
LEU 430.0143
ASN 440.0142
PHE 450.0147
TYR 460.0148
LYS 470.0154
ILE 480.0154
PRO 490.0165
ASP 500.0179
ASN 510.0187
LEU 520.0176
PRO 530.0180
PHE 540.0177
SER 550.0166
THR 560.0154
LYS 570.0138
ASN 580.0128
LEU 590.0131
ASP 600.0122
LEU 610.0125
SER 620.0110
PHE 630.0109
ASN 640.0123
PRO 650.0123
LEU 660.0129
ARG 670.0122
HIS 680.0131
LEU 690.0135
GLY 700.0150
SER 710.0156
TYR 720.0159
SER 730.0152
PHE 740.0151
PHE 750.0166
SER 760.0170
PHE 770.0157
PRO 780.0157
GLU 790.0149
LEU 800.0135
GLN 810.0119
VAL 820.0110
LEU 830.0113
ASP 840.0104
LEU 850.0105
SER 860.0091
ARG 870.0091
CYS 880.0106
GLU 890.0102
ILE 900.0108
GLN 910.0108
THR 920.0120
ILE 930.0123
GLU 940.0138
ASP 950.0143
GLY 960.0145
ALA 970.0139
TYR 980.0134
GLN 990.0145
SER 1000.0152
LEU 1010.0137
SER 1020.0133
HIS 1030.0126
LEU 1040.0115
SER 1050.0099
THR 1060.0092
LEU 1070.0095
ILE 1080.0087
LEU 1090.0086
THR 1100.0073
GLY 1110.0071
ASN 1120.0085
PRO 1130.0083
ILE 1140.0093
GLN 1150.0100
SER 1160.0114
LEU 1170.0113
ALA 1180.0126
LEU 1190.0126
GLY 1200.0133
ALA 1210.0123
PHE 1220.0116
SER 1230.0129
GLY 1240.0133
LEU 1250.0117
SER 1260.0117
SER 1270.0107
LEU 1280.0096
GLN 1290.0082
LYS 1300.0075
LEU 1310.0076
VAL 1320.0069
ALA 1330.0069
VAL 1340.0056
GLU 1350.0056
THR 1360.0070
ASN 1370.0068
LEU 1380.0069
ALA 1390.0070
SER 1400.0075
LEU 1410.0076
GLU 1420.0090
ASN 1430.0095
PHE 1440.0091
PRO 1450.0102
ILE 1460.0095
GLY 1470.0099
HIS 1480.0107
LEU 1490.0098
LYS 1500.0093
THR 1510.0089
LEU 1520.0078
LYS 1530.0065
GLU 1540.0059
LEU 1550.0060
ASN 1560.0053
VAL 1570.0054
ALA 1580.0041
HIS 1590.0039
ASN 1600.0049
LEU 1610.0052
ILE 1620.0055
GLN 1630.0057
SER 1640.0062
PHE 1650.0058
LYS 1660.0070
LEU 1670.0072
PRO 1680.0085
GLU 1690.0093
TYR 1700.0093
PHE 1710.0080
SER 1720.0085
ASN 1730.0091
LEU 1740.0080
THR 1750.0076
ASN 1760.0070
LEU 1770.0061
GLU 1780.0049
HIS 1790.0044
LEU 1800.0045
ASP 1810.0039
LEU 1820.0039
SER 1830.0028
SER 1840.0026
ASN 1850.0036
LYS 1860.0040
ILE 1870.0044
GLN 1880.0046
SER 1890.0053
ILE 1900.0056
TYR 1910.0068
CYS 1920.0074
THR 1930.0081
ASP 1940.0071
LEU 1950.0068
ARG 1960.0080
VAL 1970.0078
LEU 1980.0067
HIS 1990.0072
GLN 2000.0080
MET 2010.0071
PRO 2020.0062
LEU 2030.0058
LEU 2040.0055
ASN 2050.0044
LEU 2060.0041
SER 2070.0031
LEU 2080.0031
ASP 2090.0025
LEU 2100.0026
SER 2110.0017
LEU 2120.0017
ASN 2130.0026
PRO 2140.0030
MET 2150.0037
ASN 2160.0046
PHE 2170.0053
ILE 2180.0053
GLN 2190.0065
PRO 2200.0067
GLY 2210.0068
ALA 2220.0062
PHE 2230.0053
LYS 2240.0060
GLU 2250.0058
ILE 2260.0050
ARG 2270.0039
LEU 2280.0032
HIS 2290.0025
LYS 2300.0020
LEU 2310.0020
THR 2320.0014
LEU 2330.0017
ARG 2340.0013
ASN 2350.0016
ASN 2360.0023
PHE 2370.0030
ASP 2380.0033
SER 2390.0042
LEU 2400.0046
ASN 2410.0053
VAL 2420.0046
MET 2430.0040
LYS 2440.0049
THR 2450.0053
CYS 2460.0045
ILE 2470.0042
GLN 2480.0053
GLY 2490.0052
LEU 2500.0044
ALA 2510.0052
GLY 2520.0050
LEU 2530.0040
GLU 2540.0033
VAL 2550.0024
HIS 2560.0017
ARG 2570.0013
LEU 2580.0015
VAL 2590.0014
LEU 2600.0019
GLY 2610.0021
GLU 2620.0018
PHE 2630.0019
ARG 2640.0029
ASN 2650.0025
GLU 2660.0019
GLY 2670.0023
ASN 2680.0028
LEU 2690.0036
GLU 2700.0045
LYS 2710.0050
PHE 2720.0046
ASP 2730.0054
LYS 2740.0054
SER 2750.0053
ALA 2760.0044
LEU 2770.0041
GLU 2780.0049
GLY 2790.0045
LEU 2800.0037
CYS 2810.0044
ASN 2820.0047
LEU 2830.0037
THR 2840.0030
ILE 2850.0022
GLU 2860.0016
GLU 2870.0016
PHE 2880.0020
ARG 2890.0021
LEU 2900.0026
ALA 2910.0024
TYR 2920.0029
LEU 2930.0033
ASP 2940.0037
TYR 2950.0043
TYR 2960.0050
LEU 2970.0048
ASP 2980.0055
GLY 2990.0053
ILE 3000.0047
ILE 3010.0051
ASP 3020.0051
LEU 3030.0045
PHE 3040.0039
ASN 3050.0042
CYS 3060.0038
LEU 3070.0031
THR 3080.0033
ASN 3090.0028
VAL 3100.0024
SER 3110.0021
SER 3120.0023
PHE 3130.0027
SER 3140.0029
LEU 3150.0033
VAL 3160.0033
SER 3170.0036
VAL 3180.0039
THR 3190.0045
ILE 3200.0048
GLU 3210.0054
ARG 3220.0053
VAL 3230.0049
LYS 3240.0050
ASP 3250.0047
PHE 3260.0042
SER 3270.0046
TYR 3280.0043
ASN 3290.0039
PHE 3300.0035
GLY 3310.0030
TRP 3320.0031
GLN 3330.0029
HIS 3340.0030
LEU 3350.0033
GLU 3360.0033
LEU 3370.0038
VAL 3380.0038
ASN 3390.0040
CYS 3400.0042
LYS 3410.0047
PHE 3420.0048
GLY 3430.0052
GLN 3440.0051
PHE 3450.0048
PRO 3460.0045
THR 3470.0045
LEU 3480.0041
LYS 3490.0041
LEU 3500.0037
LYS 3510.0035
SER 3520.0034
LEU 3530.0035
LYS 3540.0035
ARG 3550.0036
LEU 3560.0038
THR 3570.0039
PHE 3580.0042
THR 3590.0043
SER 3600.0045
ASN 3610.0046
LYS 3620.0048
GLY 3630.0049
GLY 3640.0049
ASN 3650.0048
ALA 3660.0048
PHE 3670.0044
SER 3680.0044
GLU 3690.0043
VAL 3700.0041
ASP 3710.0039
LEU 3720.0039
PRO 3730.0039
SER 3740.0038
LEU 3750.0039
GLU 3760.0039
PHE 3770.0040
LEU 3780.0042
ASP 3790.0043
LEU 3800.0045
SER 3810.0046
ARG 3820.0048
ASN 3830.0048
GLY 3840.0048
LEU 3850.0046
SER 3860.0044
PHE 3870.0041
LYS 3880.0039
GLY 3890.0037
CYS 3900.0037
CYS 3910.0036
SER 3920.0038
GLN 3930.0038
SER 3940.0038
ASP 3950.0039
PHE 3960.0039
GLY 3970.0040
THR 3980.0040
ILE 3990.0041
SER 4000.0041
LEU 4010.0040
LYS 4020.0041
TYR 4030.0042
LEU 4040.0042
ASP 4050.0043
LEU 4060.0044
SER 4070.0046
PHE 4080.0049
ASN 4090.0046
GLY 4100.0045
VAL 4110.0042
ILE 4120.0039
THR 4130.0036
MET 4140.0034
SER 4150.0032
SER 4160.0032
ASN 4170.0033
PHE 4180.0035
LEU 4190.0035
GLY 4200.0038
LEU 4210.0038
GLU 4220.0038
GLN 4230.0041
LEU 4240.0040
GLU 4250.0041
HIS 4260.0042
LEU 4270.0041
ASP 4280.0044
PHE 4290.0043
GLN 4300.0047
HIS 4310.0049
SER 4320.0046
ASN 4330.0043
LEU 4340.0039
LYS 4350.0036
GLN 4360.0033
MET 4370.0034
SER 4380.0035
GLU 4390.0032
PHE 4400.0030
SER 4410.0030
VAL 4420.0031
PHE 4430.0032
LEU 4440.0031
SER 4450.0032
LEU 4460.0034
ARG 4470.0034
ASN 4480.0038
LEU 4490.0039
ILE 4500.0042
TYR 4510.0045
LEU 4520.0042
ASP 4530.0046
ILE 4540.0044
SER 4550.0050
HIS 4560.0052
THR 4570.0047
HIS 4580.0046
THR 4590.0041
ARG 4600.0043
VAL 4610.0041
ALA 4620.0044
PHE 4630.0039
ASN 4640.0040
GLY 4650.0034
ILE 4660.0034
PHE 4670.0033
ASN 4680.0030
GLY 4690.0030
LEU 4700.0032
SER 4710.0032
SER 4720.0036
LEU 4730.0039
GLU 4740.0045
VAL 4750.0049
LEU 4760.0046
LYS 4770.0052
MET 4780.0050
ALA 4790.0058
GLY 4800.0059
ASN 4810.0052
SER 4820.0054
PHE 4830.0052
GLN 4840.0053
GLU 4850.0064
ASN 4860.0066
PHE 4870.0065
LEU 4880.0058
PRO 4890.0053
ASP 4900.0047
ILE 4910.0040
PHE 4920.0039
THR 4930.0037
GLU 4940.0031
LEU 4950.0035
ARG 4960.0036
ASN 4970.0040
LEU 4980.0045
THR 4990.0054
PHE 5000.0058
LEU 5010.0056
ASP 5020.0061
LEU 5030.0060
SER 5040.0070
GLN 5050.0071
CYS 5060.0063
GLN 5070.0071
LEU 5080.0071
GLU 5090.0080
GLN 5100.0077
LEU 5110.0070
SER 5120.0066
PRO 5130.0071
THR 5140.0060
ALA 5150.0055
PHE 5160.0054
ASN 5170.0052
SER 5180.0042
LEU 5190.0046
SER 5200.0048
SER 5210.0051
LEU 5220.0056
GLN 5230.0068
VAL 5240.0072
LEU 5250.0069
ASN 5260.0074
MET 5270.0076
SER 5280.0085
HIS 5290.0087
ASN 5300.0081
ASN 5310.0088
PHE 5320.0094
PHE 5330.0108
SER 5340.0108
LEU 5350.0104
ASP 5360.0097
THR 5370.0091
PHE 5380.0085
PRO 5390.0073
TYR 5400.0073
LYS 5410.0074
CYS 5420.0061
LEU 5430.0062
ASN 5440.0063
SER 5450.0065
LEU 5460.0072
GLN 5470.0084
VAL 5480.0087
LEU 5490.0086
ASP 5500.0091
TYR 5510.0095
SER 5520.0104
LEU 5530.0105
ASN 5540.0101
HIS 5550.0111
ILE 5560.0114
MET 5570.0129
THR 5580.0128
SER 5590.0120
LYS 5600.0121
LYS 5610.0113
GLN 5620.0120
GLU 5630.0107
LEU 5640.0112
GLN 5650.0108
HIS 5660.0093
PHE 5670.0090
PRO 5680.0082
SER 5690.0087
SER 5700.0083
LEU 5710.0090
ALA 5720.0102
PHE 5730.0105
LEU 5740.0105
ASN 5750.0109
LEU 5760.0115
THR 5770.0124
GLN 5780.0125
ASN 5790.0122
ASP 5800.0131
PHE 5810.0139
ALA 5820.0149
CYS 5830.0162
THR 5840.0170
CYS 5850.0175
GLU 5860.0165
HIS 5870.0152
GLN 5880.0160
SER 5890.0148
PHE 5900.0137
LEU 5910.0149
GLN 5920.0152
TRP 5930.0137
ILE 5940.0138
LYS 5950.0149
ASP 5960.0142
GLN 5970.0131
ARG 5980.0138
GLN 5990.0132
LEU 6000.0118
LEU 6010.0124
VAL 6020.0126
GLU 6030.0138
VAL 6040.0146
GLU 6050.0156
ARG 6060.0144
MET 6070.0142
GLU 6080.0152
CYS 6090.0155
ALA 6100.0150
THR 6110.0156
PRO 6120.0172
SER 6130.0176
ASP 6140.0189
LYS 6150.0179
GLN 6160.0169
GLY 6170.0167
MET 6180.0173
PRO 6190.0165
VAL 6200.0158
LEU 6210.0162
SER 6220.0177
LEU 6230.0177
ASN 6240.0188
ILE 6250.0181
THR 6260.0194
CYS 6270.0199
GLU 10.0181
ALA 20.0175
ALA 30.0165
ALA 40.0149
LYS 50.0143
MET 60.0138
GLN 70.0124
ARG 80.0112
LEU 90.0107
VAL 100.0101
LEU 110.0085
LEU 120.0078
LEU 130.0076
ALA 140.0070
ILE 150.0056
SER 160.0054
LEU 170.0054
LEU 180.0048
LEU 190.0043
TYR 200.0044
GLN 210.0044
ASP 220.0041
LEU 230.0040
PRO 240.0041
VAL 250.0044
ARG 260.0038
SER 270.0033
GLU 280.0036
PHE 290.0031
GLU 300.0028
LEU 310.0031
ASP 320.0033
ARG 330.0029
ILE 340.0030
CYS 350.0035
GLY 360.0035
TYR 370.0036
GLY 380.0031
THR 390.0029
ALA 400.0029
ARG 410.0031
CYS 420.0035
ARG 430.0038
LYS 440.0046
LYS 450.0053
CYS 460.0055
ARG 470.0054
SER 480.0063
GLN 490.0056
GLU 500.0054
TYR 510.0059
ARG 520.0061
ILE 530.0062
GLY 540.0063
ARG 550.0058
CYS 560.0048
PRO 570.0049
ASN 580.0044
THR 590.0053
TYR 600.0048
ALA 610.0051
CYS 620.0047
CYS 630.0045
LEU 640.0044
ARG 650.0042
LYS 660.0052
TRP 670.0046
ASP 680.0043
GLU 690.0049
SER 700.0040
LEU 710.0030
LEU 720.0038
ASN 730.0037
ARG 740.0025
THR 750.0025
LYS 760.0030
PRO 770.0023
GLU 780.0017
ALA 790.0018
ALA 800.0029
ALA 810.0079
LYS 820.0074
LYS 830.0077
GLU 840.0084
MET 850.0082
ASN 860.0087
LEU 870.0078
SER 880.0083
VAL 890.0076
GLY 900.0082
LEU 910.0079
GLY 920.0084
GLY 930.0095
GLY 940.0103
SER 950.0096
ASN 960.0094
LEU 970.0086
SER 980.0090
VAL 990.0083
GLY 1000.0088
LEU 1010.0078
GLY 1020.0079
GLU 1030.0069
ILE 1040.0066
GLY 1050.0057
GLY 1060.0066
GLY 1070.0063
SER 1080.0055
LYS 1090.0058
LEU 1100.0053
LEU 1110.0056
ASP 1120.0056
ILE 1130.0057
ASN 1140.0058
LEU 1150.0055
GLY 1160.0058
ARG 1170.0053
GLY 1180.0060
GLY 1190.0058
GLY 1200.0063
SER 1210.0063
MET 1220.0066
VAL 1230.0063
ASP 1240.0070
LEU 1250.0065
THR 1260.0074
PHE 1270.0072
GLY 1280.0081
GLY 1290.0079
VAL 1300.0078
GLY 1310.0077
GLY 1320.0068
GLY 1330.0061
SER 1340.0056
THR 1350.0051
PHE 1360.0047
THR 1370.0040
PHE 1380.0039
PHE 1390.0038
PRO 1400.0040
LEU 1410.0038
VAL 1420.0047
ILE 1430.0045
GLY 1440.0057
GLY 1450.0056
GLY 1460.0041
SER 1470.0036
ASP 1480.0035
ALA 1490.0037
MET 1500.0036
TYR 1510.0037
LEU 1520.0040
GLY 1530.0039
PHE 1540.0042
ALA 1550.0040
ALA 1560.0048
GLY 1570.0045
GLY 1580.0047
GLY 1590.0049
SER 1600.0055
ALA 1610.0064
GLY 1620.0074
GLY 1630.0079
GLU 1640.0078
ASN 1650.0069
HIS 1660.0069
VAL 1670.0059
ALA 1680.0064
PHE 1690.0055
GLY 1700.0063
PRO 1710.0060
GLY 1720.0069
PRO 1730.0065
GLY 1740.0067
VAL 1750.0056
ASP 1760.0067
LEU 1770.0061
THR 1780.0072
PHE 1790.0069
GLY 1800.0082
GLY 1810.0096
VAL 1820.0089
GLN 1830.0087
PHE 1840.0077
ALA 1850.0083
MET 1860.0073
VAL 1870.0106
ASN 1880.0113
ASN 1890.0140
GLY 1900.0158
PRO 1910.0346
GLY 1920.0504
PRO 1930.0675
GLY 1940.0853
GLU 1950.0737
SER 1960.0792
PHE 1970.0690
THR 1980.0729
ALA 1990.0635
GLN 2000.0601
PRO 2010.0553
ALA 2020.0480
ASP 2030.0369
MET 2040.0304
GLN 2050.0241
ALA 2060.0074
GLY 2070.0180
ILE 2080.0202
LYS 2090.0400
GLY 2100.0491
PRO 2110.0533
GLY 2120.0718
PRO 2130.0731
GLY 2140.0602
GLY 2150.0452
SER 2160.0310
ILE 2170.0201
GLN 2180.0151
VAL 2190.0062
ILE 2200.0083
ASN 2210.0120
GLY 2220.0119
SER 2230.0140
THR 2240.0138
ILE 2250.0140
GLY 2260.0151
THR 2270.0160
GLY 2280.0160
SER 2290.0149
LYS 2300.0136
LYS 2310.0112
THR 2320.0101
ILE 2330.0071
LEU 2340.0062
ILE 2350.0035
TYR 2360.0025
SER 2370.0035
ILE 2380.0035
ILE 2390.0049
GLY 2400.0055
VAL 2410.0046
LYS 2420.0046
LYS 2430.0046
GLY 2440.0045
THR 2450.0044
LEU 2460.0025
ALA 2470.0037
TRP 2480.0039
ALA 2490.0061
ARG 2500.0070
THR 2510.0082
GLY 2520.0106
PHE 2530.0107
SER 2540.0135
PRO 2550.0134
ALA 2560.0139
LYS 2570.0150
LYS 2580.0126
LEU 2590.0108
ASN 2600.0091
ALA 2610.0054
GLY 2620.0058
VAL 2630.0054
VAL 2640.0044
ARG 2650.0059
VAL 2660.0051
PHE 2670.0056
PHE 2680.0060
LEU 2690.0067
ASN 2700.0068
GLN 2710.0059
LYS 2720.0059
LYS 2730.0068
ALA 2740.0068
LYS 2750.0064
ASP 2760.0070
VAL 2770.0076
LEU 2780.0076
ARG 2790.0075
LYS 2800.0077
THR 2810.0079
SER 2820.0072
ARG 2830.0051
PRO 2840.0039
MET 2850.0026
VAL 2860.0048
ASP 2870.0099
LEU 2880.0120
THR 2890.0182
PHE 2900.0231
GLY 2910.0299
GLY 2920.0325

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.