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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 13  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1254
GLU 270.0095
PRO 280.0090
CYS 290.0087
VAL 300.0088
GLU 310.0092
VAL 320.0088
VAL 330.0092
PRO 340.0097
ASN 350.0096
ILE 360.0089
THR 370.0085
TYR 380.0084
GLN 390.0080
CYS 400.0079
MET 410.0073
GLU 420.0071
LEU 430.0077
ASN 440.0075
PHE 450.0077
TYR 460.0076
LYS 470.0079
ILE 480.0080
PRO 490.0086
ASP 500.0092
ASN 510.0096
LEU 520.0093
PRO 530.0096
PHE 540.0094
SER 550.0092
THR 560.0087
LYS 570.0082
ASN 580.0077
LEU 590.0076
ASP 600.0072
LEU 610.0071
SER 620.0065
PHE 630.0063
ASN 640.0068
PRO 650.0066
LEU 660.0068
ARG 670.0064
HIS 680.0066
LEU 690.0069
GLY 700.0073
SER 710.0075
TYR 720.0079
SER 730.0077
PHE 740.0079
PHE 750.0084
SER 760.0088
PHE 770.0084
PRO 780.0084
GLU 790.0084
LEU 800.0078
GLN 810.0073
VAL 820.0069
LEU 830.0068
ASP 840.0064
LEU 850.0062
SER 860.0057
ARG 870.0055
CYS 880.0060
GLU 890.0057
ILE 900.0058
GLN 910.0056
THR 920.0059
ILE 930.0062
GLU 940.0066
ASP 950.0067
GLY 960.0070
ALA 970.0069
TYR 980.0070
GLN 990.0073
SER 1000.0078
LEU 1010.0074
SER 1020.0073
HIS 1030.0073
LEU 1040.0068
SER 1050.0064
THR 1060.0060
LEU 1070.0059
ILE 1080.0056
LEU 1090.0053
THR 1100.0049
GLY 1110.0047
ASN 1120.0050
PRO 1130.0047
ILE 1140.0049
GLN 1150.0049
SER 1160.0054
LEU 1170.0054
ALA 1180.0058
LEU 1190.0057
GLY 1200.0062
ALA 1210.0061
PHE 1220.0059
SER 1230.0063
GLY 1240.0068
LEU 1250.0064
SER 1260.0065
SER 1270.0065
LEU 1280.0060
GLN 1290.0057
LYS 1300.0053
LEU 1310.0050
VAL 1320.0048
ALA 1330.0046
VAL 1340.0042
GLU 1350.0040
THR 1360.0043
ASN 1370.0039
LEU 1380.0039
ALA 1390.0036
SER 1400.0037
LEU 1410.0039
GLU 1420.0040
ASN 1430.0043
PHE 1440.0045
PRO 1450.0049
ILE 1460.0050
GLY 1470.0049
HIS 1480.0054
LEU 1490.0055
LYS 1500.0054
THR 1510.0056
LEU 1520.0052
LYS 1530.0051
GLU 1540.0048
LEU 1550.0045
ASN 1560.0043
VAL 1570.0040
ALA 1580.0037
HIS 1590.0035
ASN 1600.0035
LEU 1610.0032
ILE 1620.0033
GLN 1630.0029
SER 1640.0030
PHE 1650.0031
LYS 1660.0033
LEU 1670.0036
PRO 1680.0039
GLU 1690.0041
TYR 1700.0045
PHE 1710.0043
SER 1720.0044
ASN 1730.0048
LEU 1740.0048
THR 1750.0048
ASN 1760.0050
LEU 1770.0047
GLU 1780.0046
HIS 1790.0044
LEU 1800.0041
ASP 1810.0039
LEU 1820.0036
SER 1830.0034
SER 1840.0032
ASN 1850.0031
LYS 1860.0028
ILE 1870.0028
GLN 1880.0025
SER 1890.0025
ILE 1900.0027
TYR 1910.0027
CYS 1920.0027
THR 1930.0029
ASP 1940.0031
LEU 1950.0033
ARG 1960.0034
VAL 1970.0037
LEU 1980.0037
HIS 1990.0035
GLN 2000.0038
MET 2010.0041
PRO 2020.0040
LEU 2030.0043
LEU 2040.0043
ASN 2050.0043
LEU 2060.0041
SER 2070.0040
LEU 2080.0038
ASP 2090.0036
LEU 2100.0033
SER 2110.0033
LEU 2120.0031
ASN 2130.0029
PRO 2140.0026
MET 2150.0026
ASN 2160.0023
PHE 2170.0023
ILE 2180.0025
GLN 2190.0024
PRO 2200.0024
GLY 2210.0026
ALA 2220.0027
PHE 2230.0030
LYS 2240.0029
GLU 2250.0032
ILE 2260.0033
ARG 2270.0036
LEU 2280.0037
HIS 2290.0039
LYS 2300.0038
LEU 2310.0035
THR 2320.0035
LEU 2330.0032
ARG 2340.0033
ASN 2350.0030
ASN 2360.0028
PHE 2370.0027
ASP 2380.0026
SER 2390.0025
LEU 2400.0025
ASN 2410.0024
VAL 2420.0024
MET 2430.0026
LYS 2440.0025
THR 2450.0024
CYS 2460.0026
ILE 2470.0027
GLN 2480.0025
GLY 2490.0026
LEU 2500.0028
ALA 2510.0028
GLY 2520.0030
LEU 2530.0031
GLU 2540.0034
VAL 2550.0035
HIS 2560.0037
ARG 2570.0037
LEU 2580.0035
VAL 2590.0035
LEU 2600.0033
GLY 2610.0033
GLU 2620.0032
PHE 2630.0033
ARG 2640.0033
ASN 2650.0032
GLU 2660.0030
GLY 2670.0029
ASN 2680.0029
LEU 2690.0028
GLU 2700.0027
LYS 2710.0028
PHE 2720.0030
ASP 2730.0029
LYS 2740.0029
SER 2750.0028
ALA 2760.0029
LEU 2770.0030
GLU 2780.0029
GLY 2790.0029
LEU 2800.0031
CYS 2810.0030
ASN 2820.0029
LEU 2830.0031
THR 2840.0033
ILE 2850.0034
GLU 2860.0036
GLU 2870.0037
PHE 2880.0036
ARG 2890.0036
LEU 2900.0035
ALA 2910.0036
TYR 2920.0035
LEU 2930.0034
ASP 2940.0032
TYR 2950.0032
TYR 2960.0033
LEU 2970.0035
ASP 2980.0034
GLY 2990.0034
ILE 3000.0034
ILE 3010.0033
ASP 3020.0032
LEU 3030.0033
PHE 3040.0033
ASN 3050.0033
CYS 3060.0033
LEU 3070.0034
THR 3080.0034
ASN 3090.0035
VAL 3100.0035
SER 3110.0036
SER 3120.0037
PHE 3130.0037
SER 3140.0038
LEU 3150.0037
VAL 3160.0038
SER 3170.0038
VAL 3180.0037
THR 3190.0037
ILE 3200.0037
GLU 3210.0037
ARG 3220.0036
VAL 3230.0037
LYS 3240.0037
ASP 3250.0036
PHE 3260.0037
SER 3270.0036
TYR 3280.0035
ASN 3290.0035
PHE 3300.0035
GLY 3310.0035
TRP 3320.0036
GLN 3330.0036
HIS 3340.0037
LEU 3350.0038
GLU 3360.0039
LEU 3370.0039
VAL 3380.0040
ASN 3390.0040
CYS 3400.0039
LYS 3410.0039
PHE 3420.0040
GLY 3430.0040
GLN 3440.0040
PHE 3450.0040
PRO 3460.0039
THR 3470.0038
LEU 3480.0037
LYS 3490.0037
LEU 3500.0036
LYS 3510.0036
SER 3520.0035
LEU 3530.0036
LYS 3540.0036
ARG 3550.0037
LEU 3560.0039
THR 3570.0039
PHE 3580.0040
THR 3590.0040
SER 3600.0040
ASN 3610.0041
LYS 3620.0040
GLY 3630.0041
GLY 3640.0040
ASN 3650.0039
ALA 3660.0039
PHE 3670.0039
SER 3680.0039
GLU 3690.0038
VAL 3700.0037
ASP 3710.0036
LEU 3720.0037
PRO 3730.0035
SER 3740.0034
LEU 3750.0036
GLU 3760.0035
PHE 3770.0037
LEU 3780.0038
ASP 3790.0039
LEU 3800.0040
SER 3810.0040
ARG 3820.0039
ASN 3830.0040
GLY 3840.0039
LEU 3850.0039
SER 3860.0039
PHE 3870.0036
LYS 3880.0036
GLY 3890.0034
CYS 3900.0033
CYS 3910.0032
SER 3920.0032
GLN 3930.0033
SER 3940.0036
ASP 3950.0037
PHE 3960.0037
GLY 3970.0041
THR 3980.0037
ILE 3990.0033
SER 4000.0032
LEU 4010.0034
LYS 4020.0033
TYR 4030.0034
LEU 4040.0035
ASP 4050.0036
LEU 4060.0037
SER 4070.0035
PHE 4080.0037
ASN 4090.0038
GLY 4100.0037
VAL 4110.0035
ILE 4120.0034
THR 4130.0032
MET 4140.0029
SER 4150.0031
SER 4160.0030
ASN 4170.0026
PHE 4180.0028
LEU 4190.0031
GLY 4200.0032
LEU 4210.0030
GLU 4220.0028
GLN 4230.0028
LEU 4240.0029
GLU 4250.0027
HIS 4260.0029
LEU 4270.0030
ASP 4280.0031
PHE 4290.0031
GLN 4300.0031
HIS 4310.0032
SER 4320.0033
ASN 4330.0031
LEU 4340.0028
LYS 4350.0028
GLN 4360.0026
MET 4370.0021
SER 4380.0018
GLU 4390.0023
PHE 4400.0022
SER 4410.0019
VAL 4420.0023
PHE 4430.0021
LEU 4440.0021
SER 4450.0024
LEU 4460.0022
ARG 4470.0020
ASN 4480.0022
LEU 4490.0023
ILE 4500.0022
TYR 4510.0025
LEU 4520.0024
ASP 4530.0026
ILE 4540.0025
SER 4550.0026
HIS 4560.0027
THR 4570.0027
HIS 4580.0023
THR 4590.0019
ARG 4600.0014
VAL 4610.0012
ALA 4620.0013
PHE 4630.0015
ASN 4640.0013
GLY 4650.0015
ILE 4660.0014
PHE 4670.0013
ASN 4680.0015
GLY 4690.0017
LEU 4700.0015
SER 4710.0012
SER 4720.0015
LEU 4730.0016
GLU 4740.0019
VAL 4750.0023
LEU 4760.0020
LYS 4770.0023
MET 4780.0020
ALA 4790.0024
GLY 4800.0024
ASN 4810.0018
SER 4820.0013
PHE 4830.0009
GLN 4840.0011
GLU 4850.0014
ASN 4860.0014
PHE 4870.0018
LEU 4880.0016
PRO 4890.0017
ASP 4900.0017
ILE 4910.0012
PHE 4920.0011
THR 4930.0014
GLU 4940.0012
LEU 4950.0010
ARG 4960.0011
ASN 4970.0013
LEU 4980.0016
THR 4990.0023
PHE 5000.0026
LEU 5010.0022
ASP 5020.0025
LEU 5030.0021
SER 5040.0027
GLN 5050.0026
CYS 5060.0018
GLN 5070.0020
LEU 5080.0020
GLU 5090.0025
GLN 5100.0027
LEU 5110.0027
SER 5120.0028
PRO 5130.0035
THR 5140.0030
ALA 5150.0022
PHE 5160.0022
ASN 5170.0026
SER 5180.0020
LEU 5190.0019
SER 5200.0023
SER 5210.0022
LEU 5220.0025
GLN 5230.0033
VAL 5240.0035
LEU 5250.0031
ASN 5260.0033
MET 5270.0031
SER 5280.0037
HIS 5290.0036
ASN 5300.0029
ASN 5310.0031
PHE 5320.0037
PHE 5330.0047
SER 5340.0052
LEU 5350.0052
ASP 5360.0050
THR 5370.0050
PHE 5380.0048
PRO 5390.0037
TYR 5400.0039
LYS 5410.0044
CYS 5420.0036
LEU 5430.0034
ASN 5440.0036
SER 5450.0034
LEU 5460.0038
GLN 5470.0046
VAL 5480.0046
LEU 5490.0043
ASP 5500.0045
TYR 5510.0045
SER 5520.0051
LEU 5530.0049
ASN 5540.0044
HIS 5550.0048
ILE 5560.0054
MET 5570.0064
THR 5580.0067
SER 5590.0065
LYS 5600.0065
LYS 5610.0064
GLN 5620.0072
GLU 5630.0065
LEU 5640.0067
GLN 5650.0069
HIS 5660.0058
PHE 5670.0054
PRO 5680.0050
SER 5690.0056
SER 5700.0050
LEU 5710.0053
ALA 5720.0060
PHE 5730.0059
LEU 5740.0058
ASN 5750.0059
LEU 5760.0061
THR 5770.0066
GLN 5780.0064
ASN 5790.0060
ASP 5800.0064
PHE 5810.0072
ALA 5820.0078
CYS 5830.0089
THR 5840.0094
CYS 5850.0101
GLU 5860.0093
HIS 5870.0086
GLN 5880.0095
SER 5890.0090
PHE 5900.0080
LEU 5910.0087
GLN 5920.0093
TRP 5930.0084
ILE 5940.0082
LYS 5950.0092
ASP 5960.0090
GLN 5970.0082
ARG 5980.0085
GLN 5990.0082
LEU 6000.0071
LEU 6010.0073
VAL 6020.0074
GLU 6030.0081
VAL 6040.0086
GLU 6050.0092
ARG 6060.0082
MET 6070.0079
GLU 6080.0083
CYS 6090.0084
ALA 6100.0077
THR 6110.0078
PRO 6120.0090
SER 6130.0091
ASP 6140.0102
LYS 6150.0099
GLN 6160.0090
GLY 6170.0092
MET 6180.0098
PRO 6190.0095
VAL 6200.0091
LEU 6210.0097
SER 6220.0107
LEU 6230.0106
ASN 6240.0114
ILE 6250.0111
THR 6260.0121
CYS 6270.0122
GLU 10.1254
ALA 20.1173
ALA 30.1104
ALA 40.1023
LYS 50.0942
MET 60.0875
GLN 70.0795
ARG 80.0730
LEU 90.0646
VAL 100.0583
LEU 110.0515
LEU 120.0451
LEU 130.0386
ALA 140.0338
ILE 150.0294
SER 160.0213
LEU 170.0182
LEU 180.0156
LEU 190.0138
TYR 200.0084
GLN 210.0064
ASP 220.0069
LEU 230.0042
PRO 240.0033
VAL 250.0036
ARG 260.0015
SER 270.0021
GLU 280.0022
PHE 290.0028
GLU 300.0031
LEU 310.0034
ASP 320.0036
ARG 330.0036
ILE 340.0038
CYS 350.0042
GLY 360.0041
TYR 370.0040
GLY 380.0037
THR 390.0038
ALA 400.0039
ARG 410.0041
CYS 420.0044
ARG 430.0045
LYS 440.0049
LYS 450.0049
CYS 460.0051
ARG 470.0049
SER 480.0050
GLN 490.0048
GLU 500.0049
TYR 510.0050
ARG 520.0052
ILE 530.0052
GLY 540.0054
ARG 550.0053
CYS 560.0048
PRO 570.0049
ASN 580.0048
THR 590.0053
TYR 600.0050
ALA 610.0050
CYS 620.0049
CYS 630.0048
LEU 640.0046
ARG 650.0045
LYS 660.0049
TRP 670.0046
ASP 680.0044
GLU 690.0043
SER 700.0040
LEU 710.0039
LEU 720.0039
ASN 730.0037
ARG 740.0034
THR 750.0033
LYS 760.0029
PRO 770.0018
GLU 780.0017
ALA 790.0012
ALA 800.0011
ALA 810.0020
LYS 820.0025
LYS 830.0026
GLU 840.0035
MET 850.0038
ASN 860.0051
LEU 870.0056
SER 880.0066
VAL 890.0074
GLY 900.0082
LEU 910.0092
GLY 920.0101
GLY 930.0107
GLY 940.0100
SER 950.0095
ASN 960.0083
LEU 970.0077
SER 980.0068
VAL 990.0060
GLY 1000.0053
LEU 1010.0045
GLY 1020.0041
GLU 1030.0030
ILE 1040.0030
GLY 1050.0023
GLY 1060.0016
GLY 1070.0019
SER 1080.0020
LYS 1090.0031
LEU 1100.0036
LEU 1110.0047
ASP 1120.0058
ILE 1130.0069
ASN 1140.0079
LEU 1150.0089
GLY 1160.0100
ARG 1170.0110
GLY 1180.0113
GLY 1190.0115
GLY 1200.0111
SER 1210.0099
MET 1220.0094
VAL 1230.0083
ASP 1240.0078
LEU 1250.0066
THR 1260.0060
PHE 1270.0049
GLY 1280.0044
GLY 1290.0037
VAL 1300.0027
GLY 1310.0024
GLY 1320.0020
GLY 1330.0025
SER 1340.0025
THR 1350.0034
PHE 1360.0041
THR 1370.0051
PHE 1380.0059
PHE 1390.0068
PRO 1400.0078
LEU 1410.0079
VAL 1420.0093
ILE 1430.0091
GLY 1440.0100
GLY 1450.0109
GLY 1460.0102
SER 1470.0093
ASP 1480.0093
ALA 1490.0079
MET 1500.0075
TYR 1510.0061
LEU 1520.0054
GLY 1530.0045
PHE 1540.0038
ALA 1550.0036
ALA 1560.0026
GLY 1570.0032
GLY 1580.0032
GLY 1590.0036
SER 1600.0034
ALA 1610.0046
GLY 1620.0043
GLY 1630.0050
GLU 1640.0054
ASN 1650.0060
HIS 1660.0070
VAL 1670.0074
ALA 1680.0085
PHE 1690.0090
GLY 1700.0102
PRO 1710.0112
GLY 1720.0115
PRO 1730.0111
GLY 1740.0105
VAL 1750.0094
ASP 1760.0093
LEU 1770.0082
THR 1780.0080
PHE 1790.0071
GLY 1800.0069
GLY 1810.0083
VAL 1820.0088
GLN 1830.0095
PHE 1840.0096
ALA 1850.0106
MET 1860.0104
VAL 1870.0116
ASN 1880.0115
ASN 1890.0119
GLY 1900.0118
PRO 1910.0118
GLY 1920.0110
PRO 1930.0128
GLY 1940.0144
GLU 1950.0120
SER 1960.0124
PHE 1970.0113
THR 1980.0113
ALA 1990.0131
GLN 2000.0136
PRO 2010.0165
ALA 2020.0169
ASP 2030.0167
MET 2040.0187
GLN 2050.0212
ALA 2060.0213
GLY 2070.0245
ILE 2080.0206
LYS 2090.0211
GLY 2100.0218
PRO 2110.0165
GLY 2120.0172
PRO 2130.0179
GLY 2140.0145
GLY 2150.0118
SER 2160.0120
ILE 2170.0119
GLN 2180.0119
VAL 2190.0119
ILE 2200.0119
ASN 2210.0118
GLY 2220.0107
SER 2230.0116
THR 2240.0119
ILE 2250.0112
GLY 2260.0131
THR 2270.0141
GLY 2280.0131
SER 2290.0123
LYS 2300.0098
LYS 2310.0088
THR 2320.0066
ILE 2330.0061
LEU 2340.0046
ILE 2350.0034
TYR 2360.0027
SER 2370.0022
ILE 2380.0021
ILE 2390.0024
GLY 2400.0028
VAL 2410.0030
LYS 2420.0033
LYS 2430.0037
GLY 2440.0036
THR 2450.0033
LEU 2460.0030
ALA 2470.0033
TRP 2480.0034
ALA 2490.0034
ARG 2500.0039
THR 2510.0036
GLY 2520.0035
PHE 2530.0029
SER 2540.0028
PRO 2550.0041
ALA 2560.0046
LYS 2570.0060
LYS 2580.0080
LEU 2590.0091
ASN 2600.0112
ALA 2610.0118
GLY 2620.0092
VAL 2630.0075
VAL 2640.0059
ARG 2650.0035
VAL 2660.0023
PHE 2670.0017
PHE 2680.0015
LEU 2690.0020
ASN 2700.0027
GLN 2710.0027
LYS 2720.0032
LYS 2730.0030
ALA 2740.0025
LYS 2750.0026
ASP 2760.0030
VAL 2770.0027
LEU 2780.0026
ARG 2790.0027
LYS 2800.0030
THR 2810.0032
SER 2820.0031
ARG 2830.0033
PRO 2840.0042
MET 2850.0044
VAL 2860.0051
ASP 2870.0088
LEU 2880.0113
THR 2890.0151
PHE 2900.0192
GLY 2910.0237
GLY 2920.0272

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.