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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 16  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0866
GLU 270.0074
PRO 280.0075
CYS 290.0067
VAL 300.0067
GLU 310.0064
VAL 320.0060
VAL 330.0055
PRO 340.0058
ASN 350.0052
ILE 360.0046
THR 370.0048
TYR 380.0053
GLN 390.0056
CYS 400.0058
MET 410.0056
GLU 420.0061
LEU 430.0067
ASN 440.0067
PHE 450.0063
TYR 460.0064
LYS 470.0060
ILE 480.0055
PRO 490.0060
ASP 500.0063
ASN 510.0067
LEU 520.0060
PRO 530.0055
PHE 540.0049
SER 550.0043
THR 560.0043
LYS 570.0035
ASN 580.0038
LEU 590.0042
ASP 600.0044
LEU 610.0047
SER 620.0046
PHE 630.0051
ASN 640.0055
PRO 650.0056
LEU 660.0052
ARG 670.0049
HIS 680.0048
LEU 690.0045
GLY 700.0049
SER 710.0048
TYR 720.0047
SER 730.0048
PHE 740.0044
PHE 750.0048
SER 760.0050
PHE 770.0042
PRO 780.0037
GLU 790.0032
LEU 800.0031
GLN 810.0024
VAL 820.0027
LEU 830.0031
ASP 840.0034
LEU 850.0036
SER 860.0036
ARG 870.0040
CYS 880.0044
GLU 890.0044
ILE 900.0040
GLN 910.0039
THR 920.0040
ILE 930.0037
GLU 940.0042
ASP 950.0041
GLY 960.0039
ALA 970.0039
TYR 980.0033
GLN 990.0036
SER 1000.0036
LEU 1010.0029
SER 1020.0023
HIS 1030.0019
LEU 1040.0019
SER 1050.0013
THR 1060.0017
LEU 1070.0020
ILE 1080.0024
LEU 1090.0025
THR 1100.0026
GLY 1110.0030
ASN 1120.0032
PRO 1130.0032
ILE 1140.0029
GLN 1150.0032
SER 1160.0035
LEU 1170.0031
ALA 1180.0035
LEU 1190.0032
GLY 1200.0034
ALA 1210.0031
PHE 1220.0024
SER 1230.0029
GLY 1240.0027
LEU 1250.0020
SER 1260.0017
SER 1270.0010
LEU 1280.0009
GLN 1290.0004
LYS 1300.0009
LEU 1310.0010
VAL 1320.0015
ALA 1330.0015
VAL 1340.0017
GLU 1350.0020
THR 1360.0020
ASN 1370.0019
LEU 1380.0013
ALA 1390.0011
SER 1400.0010
LEU 1410.0009
GLU 1420.0016
ASN 1430.0019
PHE 1440.0016
PRO 1450.0020
ILE 1460.0015
GLY 1470.0019
HIS 1480.0020
LEU 1490.0013
LYS 1500.0014
THR 1510.0007
LEU 1520.0004
LYS 1530.0007
GLU 1540.0007
LEU 1550.0005
ASN 1560.0010
VAL 1570.0009
ALA 1580.0014
HIS 1590.0016
ASN 1600.0013
LEU 1610.0010
ILE 1620.0004
GLN 1630.0002
SER 1640.0006
PHE 1650.0009
LYS 1660.0012
LEU 1670.0013
PRO 1680.0016
GLU 1690.0021
TYR 1700.0019
PHE 1710.0015
SER 1720.0021
ASN 1730.0020
LEU 1740.0013
THR 1750.0017
ASN 1760.0013
LEU 1770.0010
GLU 1780.0014
HIS 1790.0013
LEU 1800.0010
ASP 1810.0012
LEU 1820.0010
SER 1830.0015
SER 1840.0016
ASN 1850.0011
LYS 1860.0009
ILE 1870.0008
GLN 1880.0010
SER 1890.0012
ILE 1900.0015
TYR 1910.0018
CYS 1920.0023
THR 1930.0022
ASP 1940.0016
LEU 1950.0020
ARG 1960.0024
VAL 1970.0021
LEU 1980.0022
HIS 1990.0027
GLN 2000.0028
MET 2010.0025
PRO 2020.0029
LEU 2030.0027
LEU 2040.0021
ASN 2050.0021
LEU 2060.0018
SER 2070.0019
LEU 2080.0017
ASP 2090.0017
LEU 2100.0016
SER 2110.0020
LEU 2120.0020
ASN 2130.0015
PRO 2140.0016
MET 2150.0017
ASN 2160.0018
PHE 2170.0018
ILE 2180.0020
GLN 2190.0022
PRO 2200.0028
GLY 2210.0030
ALA 2220.0024
PHE 2230.0026
LYS 2240.0032
GLU 2250.0033
ILE 2260.0028
ARG 2270.0028
LEU 2280.0025
HIS 2290.0025
LYS 2300.0025
LEU 2310.0024
THR 2320.0024
LEU 2330.0024
ARG 2340.0026
ASN 2350.0027
ASN 2360.0023
PHE 2370.0025
ASP 2380.0026
SER 2390.0029
LEU 2400.0032
ASN 2410.0030
VAL 2420.0026
MET 2430.0028
LYS 2440.0031
THR 2450.0027
CYS 2460.0024
ILE 2470.0029
GLN 2480.0031
GLY 2490.0026
LEU 2500.0027
ALA 2510.0033
GLY 2520.0035
LEU 2530.0031
GLU 2540.0032
VAL 2550.0030
HIS 2560.0032
ARG 2570.0031
LEU 2580.0031
VAL 2590.0031
LEU 2600.0031
GLY 2610.0033
GLU 2620.0031
PHE 2630.0031
ARG 2640.0035
ASN 2650.0034
GLU 2660.0030
GLY 2670.0030
ASN 2680.0032
LEU 2690.0033
GLU 2700.0036
LYS 2710.0038
PHE 2720.0039
ASP 2730.0042
LYS 2740.0044
SER 2750.0040
ALA 2760.0036
LEU 2770.0038
GLU 2780.0039
GLY 2790.0035
LEU 2800.0036
CYS 2810.0041
ASN 2820.0038
LEU 2830.0036
THR 2840.0037
ILE 2850.0037
GLU 2860.0038
GLU 2870.0037
PHE 2880.0037
ARG 2890.0037
LEU 2900.0038
ALA 2910.0036
TYR 2920.0038
LEU 2930.0037
ASP 2940.0036
TYR 2950.0036
TYR 2960.0038
LEU 2970.0048
ASP 2980.0053
GLY 2990.0053
ILE 3000.0050
ILE 3010.0053
ASP 3020.0050
LEU 3030.0046
PHE 3040.0046
ASN 3050.0048
CYS 3060.0044
LEU 3070.0044
THR 3080.0048
ASN 3090.0047
VAL 3100.0043
SER 3110.0044
SER 3120.0042
PHE 3130.0043
SER 3140.0042
LEU 3150.0044
VAL 3160.0042
SER 3170.0043
VAL 3180.0045
THR 3190.0049
ILE 3200.0052
GLU 3210.0056
ARG 3220.0059
VAL 3230.0058
LYS 3240.0061
ASP 3250.0058
PHE 3260.0056
SER 3270.0059
TYR 3280.0057
ASN 3290.0056
PHE 3300.0052
GLY 3310.0051
TRP 3320.0048
GLN 3330.0047
HIS 3340.0045
LEU 3350.0047
GLU 3360.0045
LEU 3370.0048
VAL 3380.0046
ASN 3390.0047
CYS 3400.0049
LYS 3410.0053
PHE 3420.0056
GLY 3430.0060
GLN 3440.0061
PHE 3450.0059
PRO 3460.0058
THR 3470.0060
LEU 3480.0057
LYS 3490.0059
LEU 3500.0055
LYS 3510.0055
SER 3520.0052
LEU 3530.0050
LYS 3540.0047
ARG 3550.0046
LEU 3560.0048
THR 3570.0047
PHE 3580.0051
THR 3590.0049
SER 3600.0051
ASN 3610.0054
LYS 3620.0054
GLY 3630.0056
GLY 3640.0059
ASN 3650.0059
ALA 3660.0062
PHE 3670.0061
SER 3680.0064
GLU 3690.0063
VAL 3700.0060
ASP 3710.0060
LEU 3720.0055
PRO 3730.0055
SER 3740.0051
LEU 3750.0049
GLU 3760.0045
PHE 3770.0044
LEU 3780.0047
ASP 3790.0046
LEU 3800.0051
SER 3810.0049
ARG 3820.0052
ASN 3830.0057
GLY 3840.0059
LEU 3850.0059
SER 3860.0062
PHE 3870.0062
LYS 3880.0066
GLY 3890.0062
CYS 3900.0056
CYS 3910.0053
SER 3920.0055
GLN 3930.0056
SER 3940.0062
ASP 3950.0059
PHE 3960.0056
GLY 3970.0057
THR 3980.0052
ILE 3990.0049
SER 4000.0046
LEU 4010.0044
LYS 4020.0040
TYR 4030.0039
LEU 4040.0043
ASP 4050.0043
LEU 4060.0048
SER 4070.0049
PHE 4080.0054
ASN 4090.0057
GLY 4100.0061
VAL 4110.0061
ILE 4120.0059
THR 4130.0061
MET 4140.0055
SER 4150.0060
SER 4160.0057
ASN 4170.0049
PHE 4180.0048
LEU 4190.0054
GLY 4200.0054
LEU 4210.0047
GLU 4220.0044
GLN 4230.0041
LEU 4240.0037
GLU 4250.0031
HIS 4260.0030
LEU 4270.0036
ASP 4280.0038
PHE 4290.0045
GLN 4300.0045
HIS 4310.0053
SER 4320.0057
ASN 4330.0061
LEU 4340.0055
LYS 4350.0059
GLN 4360.0056
MET 4370.0047
SER 4380.0045
GLU 4390.0052
PHE 4400.0047
SER 4410.0039
VAL 4420.0042
PHE 4430.0037
LEU 4440.0039
SER 4450.0044
LEU 4460.0037
ARG 4470.0036
ASN 4480.0034
LEU 4490.0028
ILE 4500.0023
TYR 4510.0023
LEU 4520.0026
ASP 4530.0033
ILE 4540.0040
SER 4550.0045
HIS 4560.0056
THR 4570.0054
HIS 4580.0062
THR 4590.0053
ARG 4600.0056
VAL 4610.0045
ALA 4620.0044
PHE 4630.0035
ASN 4640.0025
GLY 4650.0028
ILE 4660.0030
PHE 4670.0025
ASN 4680.0029
GLY 4690.0035
LEU 4700.0028
SER 4710.0033
SER 4720.0032
LEU 4730.0024
GLU 4740.0025
VAL 4750.0024
LEU 4760.0025
LYS 4770.0033
MET 4780.0040
ALA 4790.0051
GLY 4800.0063
ASN 4810.0058
SER 4820.0062
PHE 4830.0054
GLN 4840.0056
GLU 4850.0064
ASN 4860.0066
PHE 4870.0055
LEU 4880.0046
PRO 4890.0033
ASP 4900.0028
ILE 4910.0022
PHE 4920.0026
THR 4930.0033
GLU 4940.0033
LEU 4950.0031
ARG 4960.0043
ASN 4970.0040
LEU 4980.0034
THR 4990.0042
PHE 5000.0039
LEU 5010.0039
ASP 5020.0044
LEU 5030.0050
SER 5040.0064
GLN 5050.0074
CYS 5060.0067
GLN 5070.0081
LEU 5080.0072
GLU 5090.0080
GLN 5100.0070
LEU 5110.0059
SER 5120.0050
PRO 5130.0062
THR 5140.0053
ALA 5150.0044
PHE 5160.0051
ASN 5170.0058
SER 5180.0054
LEU 5190.0052
SER 5200.0067
SER 5210.0061
LEU 5220.0055
GLN 5230.0063
VAL 5240.0061
LEU 5250.0060
ASN 5260.0065
MET 5270.0072
SER 5280.0084
HIS 5290.0093
ASN 5300.0088
ASN 5310.0099
PHE 5320.0101
PHE 5330.0117
SER 5340.0116
LEU 5350.0112
ASP 5360.0103
THR 5370.0103
PHE 5380.0095
PRO 5390.0076
TYR 5400.0083
LYS 5410.0095
CYS 5420.0085
LEU 5430.0080
ASN 5440.0091
SER 5450.0082
LEU 5460.0081
GLN 5470.0088
VAL 5480.0085
LEU 5490.0085
ASP 5500.0089
TYR 5510.0097
SER 5520.0110
LEU 5530.0117
ASN 5540.0113
HIS 5550.0127
ILE 5560.0127
MET 5570.0147
THR 5580.0144
SER 5590.0133
LYS 5600.0128
LYS 5610.0120
GLN 5620.0137
GLU 5630.0125
LEU 5640.0133
GLN 5650.0138
HIS 5660.0121
PHE 5670.0113
PRO 5680.0110
SER 5690.0123
SER 5700.0109
LEU 5710.0107
ALA 5720.0114
PHE 5730.0109
LEU 5740.0112
ASN 5750.0114
LEU 5760.0125
THR 5770.0136
GLN 5780.0142
ASN 5790.0140
ASP 5800.0155
PHE 5810.0163
ALA 5820.0177
CYS 5830.0195
THR 5840.0204
CYS 5850.0209
GLU 5860.0192
HIS 5870.0178
GLN 5880.0192
SER 5890.0179
PHE 5900.0163
LEU 5910.0178
GLN 5920.0188
TRP 5930.0169
ILE 5940.0165
LYS 5950.0183
ASP 5960.0180
GLN 5970.0162
ARG 5980.0163
GLN 5990.0155
LEU 6000.0135
LEU 6010.0138
VAL 6020.0132
GLU 6030.0146
VAL 6040.0162
GLU 6050.0175
ARG 6060.0162
MET 6070.0163
GLU 6080.0180
CYS 6090.0187
ALA 6100.0184
THR 6110.0191
PRO 6120.0212
SER 6130.0223
ASP 6140.0239
LYS 6150.0223
GLN 6160.0210
GLY 6170.0205
MET 6180.0209
PRO 6190.0195
VAL 6200.0188
LEU 6210.0193
SER 6220.0214
LEU 6230.0217
ASN 6240.0234
ILE 6250.0226
THR 6260.0244
CYS 6270.0249
GLU 10.0313
ALA 20.0292
ALA 30.0273
ALA 40.0247
LYS 50.0223
MET 60.0207
GLN 70.0183
ARG 80.0161
LEU 90.0138
VAL 100.0125
LEU 110.0100
LEU 120.0080
LEU 130.0070
ALA 140.0056
ILE 150.0037
SER 160.0019
LEU 170.0026
LEU 180.0016
LEU 190.0020
TYR 200.0031
GLN 210.0033
ASP 220.0032
LEU 230.0039
PRO 240.0048
VAL 250.0051
ARG 260.0048
SER 270.0047
GLU 280.0045
PHE 290.0043
GLU 300.0044
LEU 310.0043
ASP 320.0041
ARG 330.0039
ILE 340.0040
CYS 350.0040
GLY 360.0038
TYR 370.0041
GLY 380.0041
THR 390.0040
ALA 400.0037
ARG 410.0035
CYS 420.0035
ARG 430.0030
LYS 440.0028
LYS 450.0024
CYS 460.0023
ARG 470.0019
SER 480.0016
GLN 490.0019
GLU 500.0024
TYR 510.0027
ARG 520.0030
ILE 530.0036
GLY 540.0038
ARG 550.0039
CYS 560.0040
PRO 570.0044
ASN 580.0041
THR 590.0038
TYR 600.0034
ALA 610.0032
CYS 620.0034
CYS 630.0030
LEU 640.0031
ARG 650.0027
LYS 660.0028
TRP 670.0030
ASP 680.0025
GLU 690.0026
SER 700.0023
LEU 710.0026
LEU 720.0030
ASN 730.0026
ARG 740.0024
THR 750.0029
LYS 760.0028
PRO 770.0023
GLU 780.0021
ALA 790.0019
ALA 800.0017
ALA 810.0029
LYS 820.0040
LYS 830.0054
GLU 840.0069
MET 850.0083
ASN 860.0097
LEU 870.0112
SER 880.0125
VAL 890.0142
GLY 900.0154
LEU 910.0171
GLY 920.0187
GLY 930.0193
GLY 940.0175
SER 950.0166
ASN 960.0145
LEU 970.0140
SER 980.0121
VAL 990.0116
GLY 1000.0098
LEU 1010.0095
GLY 1020.0085
GLU 1030.0072
ILE 1040.0081
GLY 1050.0072
GLY 1060.0073
GLY 1070.0085
SER 1080.0088
LYS 1090.0099
LEU 1100.0112
LEU 1110.0120
ASP 1120.0139
ILE 1130.0146
ASN 1140.0164
LEU 1150.0175
GLY 1160.0190
ARG 1170.0207
GLY 1180.0208
GLY 1190.0213
GLY 1200.0207
SER 1210.0189
MET 1220.0178
VAL 1230.0162
ASP 1240.0151
LEU 1250.0135
THR 1260.0124
PHE 1270.0108
GLY 1280.0098
GLY 1290.0088
VAL 1300.0072
GLY 1310.0066
GLY 1320.0054
GLY 1330.0053
SER 1340.0061
THR 1350.0065
PHE 1360.0085
THR 1370.0093
PHE 1380.0111
PHE 1390.0120
PRO 1400.0138
LEU 1410.0147
VAL 1420.0171
ILE 1430.0190
GLY 1440.0215
GLY 1450.0241
GLY 1460.0234
SER 1470.0216
ASP 1480.0202
ALA 1490.0182
MET 1500.0164
TYR 1510.0148
LEU 1520.0130
GLY 1530.0116
PHE 1540.0098
ALA 1550.0085
ALA 1560.0064
GLY 1570.0046
GLY 1580.0030
GLY 1590.0031
SER 1600.0042
ALA 1610.0070
GLY 1620.0081
GLY 1630.0098
GLU 1640.0108
ASN 1650.0115
HIS 1660.0133
VAL 1670.0141
ALA 1680.0158
PHE 1690.0170
GLY 1700.0185
PRO 1710.0205
GLY 1720.0198
PRO 1730.0187
GLY 1740.0172
VAL 1750.0163
ASP 1760.0155
LEU 1770.0137
THR 1780.0134
PHE 1790.0117
GLY 1800.0116
GLY 1810.0131
VAL 1820.0128
GLN 1830.0139
PHE 1840.0134
ALA 1850.0148
MET 1860.0145
VAL 1870.0125
ASN 1880.0121
ASN 1890.0094
GLY 1900.0101
PRO 1910.0168
GLY 1920.0392
PRO 1930.0653
GLY 1940.0866
GLU 1950.0682
SER 1960.0731
PHE 1970.0581
THR 1980.0552
ALA 1990.0432
GLN 2000.0327
PRO 2010.0281
ALA 2020.0152
ASP 2030.0101
MET 2040.0118
GLN 2050.0137
ALA 2060.0147
GLY 2070.0192
ILE 2080.0129
LYS 2090.0136
GLY 2100.0167
PRO 2110.0164
GLY 2120.0202
PRO 2130.0260
GLY 2140.0296
GLY 2150.0247
SER 2160.0236
ILE 2170.0176
GLN 2180.0200
VAL 2190.0181
ILE 2200.0190
ASN 2210.0219
GLY 2220.0214
SER 2230.0233
THR 2240.0283
ILE 2250.0295
GLY 2260.0350
THR 2270.0395
GLY 2280.0403
SER 2290.0406
LYS 2300.0361
LYS 2310.0310
THR 2320.0269
ILE 2330.0219
LEU 2340.0174
ILE 2350.0126
TYR 2360.0091
SER 2370.0069
ILE 2380.0047
ILE 2390.0067
GLY 2400.0062
VAL 2410.0055
LYS 2420.0057
LYS 2430.0056
GLY 2440.0058
THR 2450.0060
LEU 2460.0050
ALA 2470.0083
TRP 2480.0105
ALA 2490.0134
ARG 2500.0159
THR 2510.0177
GLY 2520.0234
PHE 2530.0246
SER 2540.0307
PRO 2550.0325
ALA 2560.0350
LYS 2570.0393
LYS 2580.0381
LEU 2590.0364
ASN 2600.0375
ALA 2610.0334
GLY 2620.0283
VAL 2630.0234
VAL 2640.0182
ARG 2650.0144
VAL 2660.0080
PHE 2670.0077
PHE 2680.0059
LEU 2690.0083
ASN 2700.0087
GLN 2710.0072
LYS 2720.0073
LYS 2730.0085
ALA 2740.0081
LYS 2750.0071
ASP 2760.0072
VAL 2770.0088
LEU 2780.0084
ARG 2790.0068
LYS 2800.0076
THR 2810.0094
SER 2820.0098
ARG 2830.0114
PRO 2840.0129
MET 2850.0139
VAL 2860.0148
ASP 2870.0238
LEU 2880.0284
THR 2890.0382
PHE 2900.0473
GLY 2910.0595
GLY 2920.0682

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.