CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 17  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0634
GLU 270.0048
PRO 280.0051
CYS 290.0044
VAL 300.0038
GLU 310.0030
VAL 320.0027
VAL 330.0019
PRO 340.0020
ASN 350.0022
ILE 360.0019
THR 370.0022
TYR 380.0030
GLN 390.0036
CYS 400.0043
MET 410.0046
GLU 420.0055
LEU 430.0058
ASN 440.0065
PHE 450.0061
TYR 460.0067
LYS 470.0062
ILE 480.0053
PRO 490.0050
ASP 500.0052
ASN 510.0048
LEU 520.0039
PRO 530.0034
PHE 540.0037
SER 550.0029
THR 560.0027
LYS 570.0022
ASN 580.0022
LEU 590.0030
ASP 600.0034
LEU 610.0042
SER 620.0045
PHE 630.0054
ASN 640.0057
PRO 650.0064
LEU 660.0060
ARG 670.0064
HIS 680.0064
LEU 690.0058
GLY 700.0064
SER 710.0062
TYR 720.0057
SER 730.0055
PHE 740.0047
PHE 750.0052
SER 760.0047
PHE 770.0039
PRO 780.0040
GLU 790.0031
LEU 800.0029
GLN 810.0022
VAL 820.0022
LEU 830.0029
ASP 840.0032
LEU 850.0040
SER 860.0042
ARG 870.0051
CYS 880.0054
GLU 890.0061
ILE 900.0058
GLN 910.0063
THR 920.0063
ILE 930.0057
GLU 940.0062
ASP 950.0061
GLY 960.0056
ALA 970.0053
TYR 980.0046
GLN 990.0050
SER 1000.0047
LEU 1010.0039
SER 1020.0038
HIS 1030.0031
LEU 1040.0027
SER 1050.0021
THR 1060.0020
LEU 1070.0027
ILE 1080.0030
LEU 1090.0037
THR 1100.0039
GLY 1110.0047
ASN 1120.0051
PRO 1130.0058
ILE 1140.0056
GLN 1150.0063
SER 1160.0063
LEU 1170.0057
ALA 1180.0059
LEU 1190.0055
GLY 1200.0055
ALA 1210.0051
PHE 1220.0044
SER 1230.0048
GLY 1240.0045
LEU 1250.0037
SER 1260.0037
SER 1270.0029
LEU 1280.0025
GLN 1290.0018
LYS 1300.0017
LEU 1310.0024
VAL 1320.0026
ALA 1330.0033
VAL 1340.0035
GLU 1350.0042
THR 1360.0044
ASN 1370.0051
LEU 1380.0046
ALA 1390.0049
SER 1400.0044
LEU 1410.0038
GLU 1420.0044
ASN 1430.0049
PHE 1440.0043
PRO 1450.0044
ILE 1460.0037
GLY 1470.0039
HIS 1480.0040
LEU 1490.0033
LYS 1500.0032
THR 1510.0027
LEU 1520.0021
LYS 1530.0015
GLU 1540.0015
LEU 1550.0021
ASN 1560.0024
VAL 1570.0029
ALA 1580.0032
HIS 1590.0039
ASN 1600.0042
LEU 1610.0047
ILE 1620.0042
GLN 1630.0045
SER 1640.0040
PHE 1650.0032
LYS 1660.0034
LEU 1670.0031
PRO 1680.0037
GLU 1690.0038
TYR 1700.0037
PHE 1710.0030
SER 1720.0031
ASN 1730.0034
LEU 1740.0027
THR 1750.0025
ASN 1760.0021
LEU 1770.0016
GLU 1780.0011
HIS 1790.0013
LEU 1800.0018
ASP 1810.0023
LEU 1820.0029
SER 1830.0032
SER 1840.0040
ASN 1850.0040
LYS 1860.0045
ILE 1870.0040
GLN 1880.0043
SER 1890.0039
ILE 1900.0032
TYR 1910.0032
CYS 1920.0027
THR 1930.0032
ASP 1940.0031
LEU 1950.0025
ARG 1960.0028
VAL 1970.0028
LEU 1980.0021
HIS 1990.0022
GLN 2000.0027
MET 2010.0023
PRO 2020.0020
LEU 2030.0021
LEU 2040.0017
ASN 2050.0013
LEU 2060.0011
SER 2070.0012
LEU 2080.0017
ASP 2090.0023
LEU 2100.0029
SER 2110.0034
LEU 2120.0040
ASN 2130.0040
PRO 2140.0045
MET 2150.0041
ASN 2160.0044
PHE 2170.0038
ILE 2180.0031
GLN 2190.0030
PRO 2200.0024
GLY 2210.0019
ALA 2220.0022
PHE 2230.0016
LYS 2240.0013
GLU 2250.0012
ILE 2260.0012
ARG 2270.0010
LEU 2280.0010
HIS 2290.0011
LYS 2300.0014
LEU 2310.0018
THR 2320.0025
LEU 2330.0030
ARG 2340.0036
ASN 2350.0042
ASN 2360.0040
PHE 2370.0045
ASP 2380.0052
SER 2390.0052
LEU 2400.0049
ASN 2410.0048
VAL 2420.0045
MET 2430.0040
LYS 2440.0038
THR 2450.0037
CYS 2460.0033
ILE 2470.0029
GLN 2480.0027
GLY 2490.0025
LEU 2500.0020
ALA 2510.0017
GLY 2520.0012
LEU 2530.0012
GLU 2540.0010
VAL 2550.0012
HIS 2560.0014
ARG 2570.0017
LEU 2580.0021
VAL 2590.0026
LEU 2600.0032
GLY 2610.0040
GLU 2620.0043
PHE 2630.0045
ARG 2640.0051
ASN 2650.0052
GLU 2660.0051
GLY 2670.0054
ASN 2680.0053
LEU 2690.0053
GLU 2700.0059
LYS 2710.0057
PHE 2720.0053
ASP 2730.0053
LYS 2740.0049
SER 2750.0043
ALA 2760.0042
LEU 2770.0036
GLU 2780.0034
GLY 2790.0027
LEU 2800.0025
CYS 2810.0025
ASN 2820.0019
LEU 2830.0016
THR 2840.0016
ILE 2850.0019
GLU 2860.0021
GLU 2870.0023
PHE 2880.0026
ARG 2890.0031
LEU 2900.0037
ALA 2910.0039
TYR 2920.0048
LEU 2930.0052
ASP 2940.0053
TYR 2950.0056
TYR 2960.0057
LEU 2970.0062
ASP 2980.0068
GLY 2990.0063
ILE 3000.0055
ILE 3010.0056
ASP 3020.0050
LEU 3030.0047
PHE 3040.0042
ASN 3050.0041
CYS 3060.0033
LEU 3070.0033
THR 3080.0039
ASN 3090.0035
VAL 3100.0029
SER 3110.0032
SER 3120.0030
PHE 3130.0034
SER 3140.0036
LEU 3150.0043
VAL 3160.0045
SER 3170.0052
VAL 3180.0054
THR 3190.0063
ILE 3200.0065
GLU 3210.0074
ARG 3220.0077
VAL 3230.0072
LYS 3240.0076
ASP 3250.0068
PHE 3260.0064
SER 3270.0072
TYR 3280.0064
ASN 3290.0061
PHE 3300.0050
GLY 3310.0047
TRP 3320.0042
GLN 3330.0042
HIS 3340.0038
LEU 3350.0042
GLU 3360.0041
LEU 3370.0047
VAL 3380.0048
ASN 3390.0055
CYS 3400.0058
LYS 3410.0068
PHE 3420.0077
GLY 3430.0088
GLN 3440.0088
PHE 3450.0081
PRO 3460.0075
THR 3470.0080
LEU 3480.0072
LYS 3490.0074
LEU 3500.0065
LYS 3510.0068
SER 3520.0057
LEU 3530.0053
LYS 3540.0052
ARG 3550.0047
LEU 3560.0049
THR 3570.0043
PHE 3580.0053
THR 3590.0052
SER 3600.0058
ASN 3610.0065
LYS 3620.0078
GLY 3630.0087
GLY 3640.0093
ASN 3650.0089
ALA 3660.0096
PHE 3670.0092
SER 3680.0098
GLU 3690.0097
VAL 3700.0085
ASP 3710.0086
LEU 3720.0074
PRO 3730.0079
SER 3740.0069
LEU 3750.0065
GLU 3760.0062
PHE 3770.0051
LEU 3780.0054
ASP 3790.0048
LEU 3800.0059
SER 3810.0056
ARG 3820.0061
ASN 3830.0072
GLY 3840.0083
LEU 3850.0086
SER 3860.0098
PHE 3870.0103
LYS 3880.0119
GLY 3890.0122
CYS 3900.0107
CYS 3910.0103
SER 3920.0108
GLN 3930.0104
SER 3940.0111
ASP 3950.0101
PHE 3960.0087
GLY 3970.0092
THR 3980.0086
ILE 3990.0092
SER 4000.0081
LEU 4010.0073
LYS 4020.0067
TYR 4030.0055
LEU 4040.0059
ASP 4050.0051
LEU 4060.0064
SER 4070.0057
PHE 4080.0066
ASN 4090.0080
GLY 4100.0097
VAL 4110.0107
ILE 4120.0104
THR 4130.0120
MET 4140.0119
SER 4150.0135
SER 4160.0131
ASN 4170.0122
PHE 4180.0111
LEU 4190.0125
GLY 4200.0117
LEU 4210.0100
GLU 4220.0108
GLN 4230.0094
LEU 4240.0080
GLU 4250.0071
HIS 4260.0055
LEU 4270.0058
ASP 4280.0049
PHE 4290.0063
GLN 4300.0054
HIS 4310.0070
SER 4320.0082
ASN 4330.0099
LEU 4340.0101
LYS 4350.0120
GLN 4360.0131
MET 4370.0118
SER 4380.0131
GLU 4390.0149
PHE 4400.0147
SER 4410.0133
VAL 4420.0120
PHE 4430.0109
LEU 4440.0127
SER 4450.0126
LEU 4460.0107
ARG 4470.0117
ASN 4480.0102
LEU 4490.0084
ILE 4500.0073
TYR 4510.0054
LEU 4520.0055
ASP 4530.0044
ILE 4540.0062
SER 4550.0053
HIS 4560.0070
THR 4570.0083
HIS 4580.0100
THR 4590.0100
ARG 4600.0111
VAL 4610.0109
ALA 4620.0131
PHE 4630.0136
ASN 4640.0131
GLY 4650.0136
ILE 4660.0118
PHE 4670.0108
ASN 4680.0128
GLY 4690.0129
LEU 4700.0108
SER 4710.0120
SER 4720.0107
LEU 4730.0085
GLU 4740.0074
VAL 4750.0051
LEU 4760.0049
LYS 4770.0033
MET 4780.0050
ALA 4790.0044
GLY 4800.0066
ASN 4810.0080
SER 4820.0092
PHE 4830.0102
GLN 4840.0124
GLU 4850.0121
ASN 4860.0097
PHE 4870.0094
LEU 4880.0083
PRO 4890.0105
ASP 4900.0113
ILE 4910.0109
PHE 4920.0101
THR 4930.0123
GLU 4940.0129
LEU 4950.0107
ARG 4960.0118
ASN 4970.0107
LEU 4980.0082
THR 4990.0075
PHE 5000.0050
LEU 5010.0040
ASP 5020.0021
LEU 5030.0035
SER 5040.0032
GLN 5050.0057
CYS 5060.0066
GLN 5070.0079
LEU 5080.0066
GLU 5090.0069
GLN 5100.0071
LEU 5110.0071
SER 5120.0094
PRO 5130.0092
THR 5140.0109
ALA 5150.0093
PHE 5160.0088
ASN 5170.0113
SER 5180.0124
LEU 5190.0104
SER 5200.0120
SER 5210.0110
LEU 5220.0085
GLN 5230.0081
VAL 5240.0055
LEU 5250.0037
ASN 5260.0014
MET 5270.0012
SER 5280.0030
HIS 5290.0054
ASN 5300.0053
ASN 5310.0065
PHE 5320.0043
PHE 5330.0045
SER 5340.0018
LEU 5350.0015
ASP 5360.0038
THR 5370.0058
PHE 5380.0079
PRO 5390.0077
TYR 5400.0078
LYS 5410.0104
CYS 5420.0118
LEU 5430.0104
ASN 5440.0127
SER 5450.0115
LEU 5460.0091
GLN 5470.0096
VAL 5480.0071
LEU 5490.0049
ASP 5500.0037
TYR 5510.0028
SER 5520.0054
LEU 5530.0068
ASN 5540.0055
HIS 5550.0064
ILE 5560.0041
MET 5570.0051
THR 5580.0027
SER 5590.0018
LYS 5600.0022
LYS 5610.0049
GLN 5620.0059
GLU 5630.0074
LEU 5640.0067
GLN 5650.0097
HIS 5660.0101
PHE 5670.0093
PRO 5680.0114
SER 5690.0136
SER 5700.0128
LEU 5710.0106
ALA 5720.0115
PHE 5730.0094
LEU 5740.0074
ASN 5750.0069
LEU 5760.0063
THR 5770.0087
GLN 5780.0094
ASN 5790.0075
ASP 5800.0085
PHE 5810.0078
ALA 5820.0080
CYS 5830.0097
THR 5840.0088
CYS 5850.0077
GLU 5860.0048
HIS 5870.0048
GLN 5880.0071
SER 5890.0066
PHE 5900.0058
LEU 5910.0081
GLN 5920.0100
TRP 5930.0092
ILE 5940.0095
LYS 5950.0125
ASP 5960.0129
GLN 5970.0124
ARG 5980.0131
GLN 5990.0143
LEU 6000.0115
LEU 6010.0105
VAL 6020.0112
GLU 6030.0126
VAL 6040.0130
GLU 6050.0149
ARG 6060.0129
MET 6070.0112
GLU 6080.0125
CYS 6090.0117
ALA 6100.0119
THR 6110.0114
PRO 6120.0129
SER 6130.0159
ASP 6140.0170
LYS 6150.0153
GLN 6160.0152
GLY 6170.0160
MET 6180.0158
PRO 6190.0146
VAL 6200.0121
LEU 6210.0139
SER 6220.0161
LEU 6230.0143
ASN 6240.0149
ILE 6250.0127
THR 6260.0131
CYS 6270.0115
GLU 10.0336
ALA 20.0306
ALA 30.0287
ALA 40.0258
LYS 50.0224
MET 60.0204
GLN 70.0178
ARG 80.0153
LEU 90.0119
VAL 100.0105
LEU 110.0081
LEU 120.0056
LEU 130.0039
ALA 140.0025
ILE 150.0035
SER 160.0030
LEU 170.0036
LEU 180.0039
LEU 190.0055
TYR 200.0063
GLN 210.0062
ASP 220.0065
LEU 230.0074
PRO 240.0079
VAL 250.0079
ARG 260.0069
SER 270.0059
GLU 280.0055
PHE 290.0046
GLU 300.0043
LEU 310.0042
ASP 320.0039
ARG 330.0031
ILE 340.0032
CYS 350.0032
GLY 360.0027
TYR 370.0031
GLY 380.0030
THR 390.0028
ALA 400.0024
ARG 410.0023
CYS 420.0027
ARG 430.0023
LYS 440.0026
LYS 450.0021
CYS 460.0017
ARG 470.0011
SER 480.0009
GLN 490.0012
GLU 500.0015
TYR 510.0018
ARG 520.0023
ILE 530.0028
GLY 540.0032
ARG 550.0034
CYS 560.0037
PRO 570.0043
ASN 580.0041
THR 590.0038
TYR 600.0032
ALA 610.0027
CYS 620.0027
CYS 630.0022
LEU 640.0023
ARG 650.0019
LYS 660.0024
TRP 670.0029
ASP 680.0027
GLU 690.0031
SER 700.0033
LEU 710.0037
LEU 720.0040
ASN 730.0040
ARG 740.0040
THR 750.0044
LYS 760.0042
PRO 770.0035
GLU 780.0037
ALA 790.0034
ALA 800.0032
ALA 810.0140
LYS 820.0136
LYS 830.0143
GLU 840.0169
MET 850.0166
ASN 860.0186
LEU 870.0165
SER 880.0188
VAL 890.0177
GLY 900.0203
LEU 910.0205
GLY 920.0230
GLY 930.0264
GLY 940.0275
SER 950.0250
ASN 960.0232
LEU 970.0206
SER 980.0208
VAL 990.0184
GLY 1000.0196
LEU 1010.0166
GLY 1020.0173
GLU 1030.0142
ILE 1040.0149
GLY 1050.0131
GLY 1060.0128
GLY 1070.0125
SER 1080.0098
LYS 1090.0105
LEU 1100.0093
LEU 1110.0102
ASP 1120.0110
ILE 1130.0120
ASN 1140.0129
LEU 1150.0134
GLY 1160.0157
ARG 1170.0150
GLY 1180.0180
GLY 1190.0175
GLY 1200.0191
SER 1210.0179
MET 1220.0181
VAL 1230.0158
ASP 1240.0170
LEU 1250.0142
THR 1260.0159
PHE 1270.0139
GLY 1280.0161
GLY 1290.0147
VAL 1300.0135
GLY 1310.0141
GLY 1320.0106
GLY 1330.0078
SER 1340.0064
THR 1350.0046
PHE 1360.0048
THR 1370.0057
PHE 1380.0070
PHE 1390.0090
PRO 1400.0106
LEU 1410.0101
VAL 1420.0138
ILE 1430.0105
GLY 1440.0131
GLY 1450.0120
GLY 1460.0062
SER 1470.0038
ASP 1480.0063
ALA 1490.0045
MET 1500.0051
TYR 1510.0031
LEU 1520.0035
GLY 1530.0036
PHE 1540.0034
ALA 1550.0048
ALA 1560.0049
GLY 1570.0027
GLY 1580.0021
GLY 1590.0038
SER 1600.0070
ALA 1610.0106
GLY 1620.0132
GLY 1630.0154
GLU 1640.0157
ASN 1650.0142
HIS 1660.0159
VAL 1670.0141
ALA 1680.0170
PHE 1690.0156
GLY 1700.0191
PRO 1710.0199
GLY 1720.0216
PRO 1730.0202
GLY 1740.0201
VAL 1750.0170
ASP 1760.0188
LEU 1770.0163
THR 1780.0181
PHE 1790.0161
GLY 1800.0183
GLY 1810.0226
VAL 1820.0222
GLN 1830.0226
PHE 1840.0209
ALA 1850.0229
MET 1860.0210
VAL 1870.0250
ASN 1880.0247
ASN 1890.0270
GLY 1900.0269
PRO 1910.0265
GLY 1920.0258
PRO 1930.0327
GLY 1940.0399
GLU 1950.0377
SER 1960.0440
PHE 1970.0460
THR 1980.0514
ALA 1990.0544
GLN 2000.0577
PRO 2010.0634
ALA 2020.0633
ASP 2030.0568
MET 2040.0573
GLN 2050.0591
ALA 2060.0520
GLY 2070.0465
ILE 2080.0396
LYS 2090.0318
GLY 2100.0279
PRO 2110.0200
GLY 2120.0141
PRO 2130.0167
GLY 2140.0203
GLY 2150.0190
SER 2160.0259
ILE 2170.0268
GLN 2180.0279
VAL 2190.0295
ILE 2200.0303
ASN 2210.0301
GLY 2220.0282
SER 2230.0277
THR 2240.0249
ILE 2250.0235
GLY 2260.0253
THR 2270.0236
GLY 2280.0210
SER 2290.0165
LYS 2300.0164
LYS 2310.0147
THR 2320.0150
ILE 2330.0132
LEU 2340.0149
ILE 2350.0130
TYR 2360.0131
SER 2370.0118
ILE 2380.0109
ILE 2390.0112
GLY 2400.0107
VAL 2410.0109
LYS 2420.0106
LYS 2430.0112
GLY 2440.0119
THR 2450.0116
LEU 2460.0119
ALA 2470.0121
TRP 2480.0138
ALA 2490.0148
ARG 2500.0171
THR 2510.0182
GLY 2520.0209
PHE 2530.0188
SER 2540.0218
PRO 2550.0194
ALA 2560.0190
LYS 2570.0182
LYS 2580.0150
LEU 2590.0143
ASN 2600.0119
ALA 2610.0134
GLY 2620.0135
VAL 2630.0133
VAL 2640.0123
ARG 2650.0129
VAL 2660.0109
PHE 2670.0115
PHE 2680.0102
LEU 2690.0115
ASN 2700.0104
GLN 2710.0102
LYS 2720.0087
LYS 2730.0093
ALA 2740.0104
LYS 2750.0095
ASP 2760.0089
VAL 2770.0099
LEU 2780.0109
ARG 2790.0108
LYS 2800.0104
THR 2810.0111
SER 2820.0116
ARG 2830.0123
PRO 2840.0130
MET 2850.0138
VAL 2860.0138
ASP 2870.0188
LEU 2880.0242
THR 2890.0296
PHE 2900.0374
GLY 2910.0460
GLY 2920.0534

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.