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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 20  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0748
GLU 270.0261
PRO 280.0262
CYS 290.0238
VAL 300.0250
GLU 310.0253
VAL 320.0245
VAL 330.0242
PRO 340.0251
ASN 350.0225
ILE 360.0203
THR 370.0202
TYR 380.0208
GLN 390.0207
CYS 400.0201
MET 410.0191
GLU 420.0196
LEU 430.0217
ASN 440.0208
PHE 450.0197
TYR 460.0192
LYS 470.0182
ILE 480.0173
PRO 490.0199
ASP 500.0208
ASN 510.0232
LEU 520.0216
PRO 530.0211
PHE 540.0184
SER 550.0180
THR 560.0177
LYS 570.0158
ASN 580.0161
LEU 590.0160
ASP 600.0162
LEU 610.0158
SER 620.0149
PHE 630.0156
ASN 640.0165
PRO 650.0160
LEU 660.0150
ARG 670.0134
HIS 680.0130
LEU 690.0121
GLY 700.0130
SER 710.0121
TYR 720.0126
SER 730.0135
PHE 740.0133
PHE 750.0140
SER 760.0160
PHE 770.0145
PRO 780.0126
GLU 790.0132
LEU 800.0127
GLN 810.0120
VAL 820.0122
LEU 830.0116
ASP 840.0121
LEU 850.0113
SER 860.0112
ARG 870.0117
CYS 880.0124
GLU 890.0117
ILE 900.0107
GLN 910.0100
THR 920.0102
ILE 930.0095
GLU 940.0103
ASP 950.0094
GLY 960.0091
ALA 970.0098
TYR 980.0089
GLN 990.0085
SER 1000.0098
LEU 1010.0091
SER 1020.0070
HIS 1030.0086
LEU 1040.0084
SER 1050.0086
THR 1060.0088
LEU 1070.0080
ILE 1080.0086
LEU 1090.0077
THR 1100.0081
GLY 1110.0081
ASN 1120.0086
PRO 1130.0080
ILE 1140.0074
GLN 1150.0080
SER 1160.0085
LEU 1170.0074
ALA 1180.0080
LEU 1190.0069
GLY 1200.0072
ALA 1210.0072
PHE 1220.0056
SER 1230.0057
GLY 1240.0060
LEU 1250.0059
SER 1260.0052
SER 1270.0065
LEU 1280.0063
GLN 1290.0071
LYS 1300.0071
LEU 1310.0061
VAL 1320.0066
ALA 1330.0057
VAL 1340.0061
GLU 1350.0057
THR 1360.0053
ASN 1370.0049
LEU 1380.0048
ALA 1390.0049
SER 1400.0051
LEU 1410.0052
GLU 1420.0053
ASN 1430.0054
PHE 1440.0049
PRO 1450.0050
ILE 1460.0048
GLY 1470.0053
HIS 1480.0051
LEU 1490.0051
LYS 1500.0057
THR 1510.0061
LEU 1520.0061
LYS 1530.0067
GLU 1540.0065
LEU 1550.0059
ASN 1560.0059
VAL 1570.0053
ALA 1580.0054
HIS 1590.0051
ASN 1600.0049
LEU 1610.0048
ILE 1620.0052
GLN 1630.0054
SER 1640.0056
PHE 1650.0056
LYS 1660.0059
LEU 1670.0059
PRO 1680.0061
GLU 1690.0066
TYR 1700.0061
PHE 1710.0060
SER 1720.0068
ASN 1730.0064
LEU 1740.0061
THR 1750.0068
ASN 1760.0067
LEU 1770.0064
GLU 1780.0065
HIS 1790.0061
LEU 1800.0059
ASP 1810.0056
LEU 1820.0054
SER 1830.0053
SER 1840.0051
ASN 1850.0051
LYS 1860.0052
ILE 1870.0055
GLN 1880.0056
SER 1890.0057
ILE 1900.0058
TYR 1910.0062
CYS 1920.0063
THR 1930.0067
ASP 1940.0064
LEU 1950.0063
ARG 1960.0067
VAL 1970.0068
LEU 1980.0065
HIS 1990.0070
GLN 2000.0074
MET 2010.0070
PRO 2020.0075
LEU 2030.0075
LEU 2040.0069
ASN 2050.0067
LEU 2060.0063
SER 2070.0060
LEU 2080.0058
ASP 2090.0054
LEU 2100.0054
SER 2110.0051
LEU 2120.0049
ASN 2130.0052
PRO 2140.0053
MET 2150.0054
ASN 2160.0056
PHE 2170.0057
ILE 2180.0057
GLN 2190.0059
PRO 2200.0058
GLY 2210.0060
ALA 2220.0062
PHE 2230.0060
LYS 2240.0063
GLU 2250.0065
ILE 2260.0062
ARG 2270.0064
LEU 2280.0060
HIS 2290.0059
LYS 2300.0055
LEU 2310.0054
THR 2320.0051
LEU 2330.0051
ARG 2340.0047
ASN 2350.0046
ASN 2360.0051
PHE 2370.0052
ASP 2380.0053
SER 2390.0051
LEU 2400.0048
ASN 2410.0053
VAL 2420.0054
MET 2430.0049
LYS 2440.0049
THR 2450.0054
CYS 2460.0054
ILE 2470.0051
GLN 2480.0053
GLY 2490.0057
LEU 2500.0054
ALA 2510.0054
GLY 2520.0059
LEU 2530.0058
GLU 2540.0058
VAL 2550.0055
HIS 2560.0054
ARG 2570.0049
LEU 2580.0048
VAL 2590.0044
LEU 2600.0043
GLY 2610.0039
GLU 2620.0042
PHE 2630.0042
ARG 2640.0041
ASN 2650.0044
GLU 2660.0045
GLY 2670.0047
ASN 2680.0043
LEU 2690.0044
GLU 2700.0045
LYS 2710.0043
PHE 2720.0038
ASP 2730.0039
LYS 2740.0037
SER 2750.0044
ALA 2760.0043
LEU 2770.0042
GLU 2780.0045
GLY 2790.0049
LEU 2800.0045
CYS 2810.0045
ASN 2820.0052
LEU 2830.0052
THR 2840.0052
ILE 2850.0048
GLU 2860.0048
GLU 2870.0042
PHE 2880.0039
ARG 2890.0036
LEU 2900.0033
ALA 2910.0032
TYR 2920.0030
LEU 2930.0031
ASP 2940.0029
TYR 2950.0029
TYR 2960.0023
LEU 2970.0024
ASP 2980.0025
GLY 2990.0025
ILE 3000.0025
ILE 3010.0030
ASP 3020.0035
LEU 3030.0034
PHE 3040.0031
ASN 3050.0033
CYS 3060.0039
LEU 3070.0036
THR 3080.0032
ASN 3090.0034
VAL 3100.0036
SER 3110.0033
SER 3120.0031
PHE 3130.0027
SER 3140.0026
LEU 3150.0022
VAL 3160.0022
SER 3170.0020
VAL 3180.0017
THR 3190.0012
ILE 3200.0014
GLU 3210.0016
ARG 3220.0021
VAL 3230.0015
LYS 3240.0022
ASP 3250.0023
PHE 3260.0015
SER 3270.0019
TYR 3280.0023
ASN 3290.0021
PHE 3300.0022
GLY 3310.0023
TRP 3320.0022
GLN 3330.0023
HIS 3340.0022
LEU 3350.0017
GLU 3360.0019
LEU 3370.0012
VAL 3380.0018
ASN 3390.0018
CYS 3400.0010
LYS 3410.0005
PHE 3420.0006
GLY 3430.0015
GLN 3440.0019
PHE 3450.0016
PRO 3460.0011
THR 3470.0016
LEU 3480.0009
LYS 3490.0013
LEU 3500.0009
LYS 3510.0009
SER 3520.0013
LEU 3530.0010
LYS 3540.0015
ARG 3550.0017
LEU 3560.0014
THR 3570.0017
PHE 3580.0014
THR 3590.0022
SER 3600.0024
ASN 3610.0016
LYS 3620.0021
GLY 3630.0018
GLY 3640.0022
ASN 3650.0026
ALA 3660.0032
PHE 3670.0028
SER 3680.0028
GLU 3690.0027
VAL 3700.0018
ASP 3710.0017
LEU 3720.0010
PRO 3730.0010
SER 3740.0007
LEU 3750.0013
GLU 3760.0020
PHE 3770.0021
LEU 3780.0021
ASP 3790.0024
LEU 3800.0024
SER 3810.0030
ARG 3820.0033
ASN 3830.0028
GLY 3840.0035
LEU 3850.0032
SER 3860.0037
PHE 3870.0038
LYS 3880.0042
GLY 3890.0045
CYS 3900.0043
CYS 3910.0042
SER 3920.0041
GLN 3930.0034
SER 3940.0034
ASP 3950.0032
PHE 3960.0025
GLY 3970.0025
THR 3980.0024
ILE 3990.0030
SER 4000.0027
LEU 4010.0030
LYS 4020.0034
TYR 4030.0035
LEU 4040.0035
ASP 4050.0035
LEU 4060.0036
SER 4070.0039
PHE 4080.0040
ASN 4090.0039
GLY 4100.0042
VAL 4110.0044
ILE 4120.0043
THR 4130.0046
MET 4140.0048
SER 4150.0049
SER 4160.0048
ASN 4170.0051
PHE 4180.0047
LEU 4190.0047
GLY 4200.0044
LEU 4210.0043
GLU 4220.0049
GLN 4230.0046
LEU 4240.0045
GLU 4250.0047
HIS 4260.0045
LEU 4270.0045
ASP 4280.0045
PHE 4290.0045
GLN 4300.0046
HIS 4310.0045
SER 4320.0044
ASN 4330.0045
LEU 4340.0047
LYS 4350.0048
GLN 4360.0050
MET 4370.0048
SER 4380.0050
GLU 4390.0050
PHE 4400.0052
SER 4410.0053
VAL 4420.0053
PHE 4430.0054
LEU 4440.0057
SER 4450.0056
LEU 4460.0055
ARG 4470.0060
ASN 4480.0059
LEU 4490.0056
ILE 4500.0056
TYR 4510.0053
LEU 4520.0052
ASP 4530.0050
ILE 4540.0049
SER 4550.0048
HIS 4560.0046
THR 4570.0048
HIS 4580.0044
THR 4590.0045
ARG 4600.0041
VAL 4610.0042
ALA 4620.0042
PHE 4630.0046
ASN 4640.0048
GLY 4650.0052
ILE 4660.0051
PHE 4670.0055
ASN 4680.0060
GLY 4690.0063
LEU 4700.0061
SER 4710.0066
SER 4720.0066
LEU 4730.0063
GLU 4740.0062
VAL 4750.0059
LEU 4760.0055
LYS 4770.0051
MET 4780.0048
ALA 4790.0045
GLY 4800.0042
ASN 4810.0042
SER 4820.0035
PHE 4830.0033
GLN 4840.0029
GLU 4850.0022
ASN 4860.0024
PHE 4870.0024
LEU 4880.0032
PRO 4890.0036
ASP 4900.0043
ILE 4910.0049
PHE 4920.0053
THR 4930.0057
GLU 4940.0063
LEU 4950.0062
ARG 4960.0066
ASN 4970.0069
LEU 4980.0064
THR 4990.0066
PHE 5000.0062
LEU 5010.0055
ASP 5020.0051
LEU 5030.0044
SER 5040.0043
GLN 5050.0038
CYS 5060.0035
GLN 5070.0026
LEU 5080.0025
GLU 5090.0017
GLN 5100.0017
LEU 5110.0024
SER 5120.0026
PRO 5130.0027
THR 5140.0035
ALA 5150.0039
PHE 5160.0046
ASN 5170.0048
SER 5180.0057
LEU 5190.0060
SER 5200.0065
SER 5210.0072
LEU 5220.0066
GLN 5230.0071
VAL 5240.0067
LEU 5250.0057
ASN 5260.0054
MET 5270.0044
SER 5280.0048
HIS 5290.0042
ASN 5300.0031
ASN 5310.0022
PHE 5320.0025
PHE 5330.0033
SER 5340.0035
LEU 5350.0038
ASP 5360.0028
THR 5370.0037
PHE 5380.0028
PRO 5390.0032
TYR 5400.0044
LYS 5410.0044
CYS 5420.0050
LEU 5430.0057
ASN 5440.0066
SER 5450.0074
LEU 5460.0068
GLN 5470.0078
VAL 5480.0074
LEU 5490.0062
ASP 5500.0062
TYR 5510.0052
SER 5520.0062
LEU 5530.0055
ASN 5540.0042
HIS 5550.0042
ILE 5560.0046
MET 5570.0058
THR 5580.0055
SER 5590.0047
LYS 5600.0040
LYS 5610.0031
GLN 5620.0040
GLU 5630.0032
LEU 5640.0047
GLN 5650.0049
HIS 5660.0044
PHE 5670.0052
PRO 5680.0059
SER 5690.0069
SER 5700.0076
LEU 5710.0074
ALA 5720.0088
PHE 5730.0086
LEU 5740.0074
ASN 5750.0076
LEU 5760.0069
THR 5770.0080
GLN 5780.0074
ASN 5790.0064
ASP 5800.0065
PHE 5810.0073
ALA 5820.0081
CYS 5830.0097
THR 5840.0102
CYS 5850.0106
GLU 5860.0092
HIS 5870.0081
GLN 5880.0092
SER 5890.0079
PHE 5900.0071
LEU 5910.0087
GLN 5920.0092
TRP 5930.0080
ILE 5940.0086
LYS 5950.0102
ASP 5960.0095
GLN 5970.0091
ARG 5980.0101
GLN 5990.0105
LEU 6000.0092
LEU 6010.0091
VAL 6020.0101
GLU 6030.0108
VAL 6040.0108
GLU 6050.0116
ARG 6060.0103
MET 6070.0094
GLU 6080.0098
CYS 6090.0095
ALA 6100.0086
THR 6110.0088
PRO 6120.0106
SER 6130.0112
ASP 6140.0128
LYS 6150.0120
GLN 6160.0109
GLY 6170.0112
MET 6180.0120
PRO 6190.0116
VAL 6200.0105
LEU 6210.0114
SER 6220.0130
LEU 6230.0123
ASN 6240.0133
ILE 6250.0122
THR 6260.0133
CYS 6270.0135
GLU 10.0012
ALA 20.0025
ALA 30.0022
ALA 40.0007
LYS 50.0016
MET 60.0024
GLN 70.0017
ARG 80.0007
LEU 90.0018
VAL 100.0021
LEU 110.0011
LEU 120.0010
LEU 130.0017
ALA 140.0015
ILE 150.0010
SER 160.0012
LEU 170.0014
LEU 180.0010
LEU 190.0010
TYR 200.0014
GLN 210.0012
ASP 220.0007
LEU 230.0012
PRO 240.0013
VAL 250.0026
ARG 260.0044
SER 270.0041
GLU 280.0051
PHE 290.0055
GLU 300.0045
LEU 310.0041
ASP 320.0048
ARG 330.0049
ILE 340.0040
CYS 350.0041
GLY 360.0040
TYR 370.0027
GLY 380.0030
THR 390.0039
ALA 400.0049
ARG 410.0050
CYS 420.0056
ARG 430.0061
LYS 440.0069
LYS 450.0067
CYS 460.0058
ARG 470.0059
SER 480.0059
GLN 490.0056
GLU 500.0052
TYR 510.0048
ARG 520.0051
ILE 530.0047
GLY 540.0054
ARG 550.0060
CYS 560.0057
PRO 570.0062
ASN 580.0068
THR 590.0071
TYR 600.0067
ALA 610.0061
CYS 620.0050
CYS 630.0049
LEU 640.0042
ARG 650.0045
LYS 660.0055
TRP 670.0056
ASP 680.0055
GLU 690.0056
SER 700.0056
LEU 710.0054
LEU 720.0054
ASN 730.0049
ARG 740.0047
THR 750.0048
LYS 760.0047
PRO 770.0033
GLU 780.0020
ALA 790.0019
ALA 800.0035
ALA 810.0136
LYS 820.0135
LYS 830.0131
GLU 840.0130
MET 850.0130
ASN 860.0136
LEU 870.0130
SER 880.0131
VAL 890.0125
GLY 900.0127
LEU 910.0123
GLY 920.0127
GLY 930.0136
GLY 940.0142
SER 950.0135
ASN 960.0132
LEU 970.0127
SER 980.0131
VAL 990.0127
GLY 1000.0132
LEU 1010.0134
GLY 1020.0136
GLU 1030.0139
ILE 1040.0139
GLY 1050.0143
GLY 1060.0147
GLY 1070.0135
SER 1080.0131
LYS 1090.0125
LEU 1100.0115
LEU 1110.0106
ASP 1120.0102
ILE 1130.0105
ASN 1140.0103
LEU 1150.0106
GLY 1160.0108
ARG 1170.0108
GLY 1180.0109
GLY 1190.0108
GLY 1200.0109
SER 1210.0109
MET 1220.0113
VAL 1230.0115
ASP 1240.0125
LEU 1250.0126
THR 1260.0138
PHE 1270.0133
GLY 1280.0140
GLY 1290.0140
VAL 1300.0134
GLY 1310.0134
GLY 1320.0114
GLY 1330.0115
SER 1340.0107
THR 1350.0112
PHE 1360.0121
THR 1370.0116
PHE 1380.0109
PHE 1390.0103
PRO 1400.0097
LEU 1410.0094
VAL 1420.0091
ILE 1430.0081
GLY 1440.0076
GLY 1450.0073
GLY 1460.0062
SER 1470.0065
ASP 1480.0079
ALA 1490.0079
MET 1500.0090
TYR 1510.0089
LEU 1520.0097
GLY 1530.0096
PHE 1540.0104
ALA 1550.0105
ALA 1560.0102
GLY 1570.0087
GLY 1580.0065
GLY 1590.0091
SER 1600.0103
ALA 1610.0154
GLY 1620.0161
GLY 1630.0164
GLU 1640.0158
ASN 1650.0148
HIS 1660.0140
VAL 1670.0126
ALA 1680.0121
PHE 1690.0107
GLY 1700.0105
PRO 1710.0102
GLY 1720.0098
PRO 1730.0097
GLY 1740.0106
VAL 1750.0111
ASP 1760.0127
LEU 1770.0132
THR 1780.0148
PHE 1790.0156
GLY 1800.0173
GLY 1810.0182
VAL 1820.0174
GLN 1830.0160
PHE 1840.0147
ALA 1850.0138
MET 1860.0133
VAL 1870.0136
ASN 1880.0123
ASN 1890.0169
GLY 1900.0170
PRO 1910.0293
GLY 1920.0406
PRO 1930.0457
GLY 1940.0481
GLU 1950.0404
SER 1960.0334
PHE 1970.0314
THR 1980.0224
ALA 1990.0240
GLN 2000.0229
PRO 2010.0220
ALA 2020.0252
ASP 2030.0327
MET 2040.0332
GLN 2050.0346
ALA 2060.0497
GLY 2070.0748
ILE 2080.0540
LYS 2090.0655
GLY 2100.0696
PRO 2110.0402
GLY 2120.0421
PRO 2130.0506
GLY 2140.0540
GLY 2150.0393
SER 2160.0496
ILE 2170.0410
GLN 2180.0344
VAL 2190.0276
ILE 2200.0195
ASN 2210.0186
GLY 2220.0146
SER 2230.0145
THR 2240.0219
ILE 2250.0243
GLY 2260.0306
THR 2270.0349
GLY 2280.0347
SER 2290.0344
LYS 2300.0293
LYS 2310.0251
THR 2320.0211
ILE 2330.0196
LEU 2340.0164
ILE 2350.0158
TYR 2360.0134
SER 2370.0119
ILE 2380.0102
ILE 2390.0085
GLY 2400.0076
VAL 2410.0052
LYS 2420.0047
LYS 2430.0043
GLY 2440.0057
THR 2450.0066
LEU 2460.0083
ALA 2470.0091
TRP 2480.0108
ALA 2490.0112
ARG 2500.0132
THR 2510.0134
GLY 2520.0149
PHE 2530.0153
SER 2540.0174
PRO 2550.0192
ALA 2560.0182
LYS 2570.0209
LYS 2580.0229
LEU 2590.0210
ASN 2600.0243
ALA 2610.0223
GLY 2620.0198
VAL 2630.0176
VAL 2640.0156
ARG 2650.0141
VAL 2660.0137
PHE 2670.0128
PHE 2680.0116
LEU 2690.0112
ASN 2700.0098
GLN 2710.0085
LYS 2720.0070
LYS 2730.0087
ALA 2740.0099
LYS 2750.0088
ASP 2760.0091
VAL 2770.0130
LEU 2780.0137
ARG 2790.0126
LYS 2800.0142
THR 2810.0205
SER 2820.0250
ARG 2830.0225
PRO 2840.0265
MET 2850.0287
VAL 2860.0262
ASP 2870.0121
LEU 2880.0209
THR 2890.0209
PHE 2900.0343
GLY 2910.0491
GLY 2920.0685

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.