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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 22  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0655
GLU 270.0278
PRO 280.0278
CYS 290.0253
VAL 300.0271
GLU 310.0277
VAL 320.0270
VAL 330.0267
PRO 340.0277
ASN 350.0247
ILE 360.0222
THR 370.0220
TYR 380.0223
GLN 390.0221
CYS 400.0210
MET 410.0198
GLU 420.0199
LEU 430.0219
ASN 440.0203
PHE 450.0193
TYR 460.0181
LYS 470.0174
ILE 480.0170
PRO 490.0203
ASP 500.0217
ASN 510.0247
LEU 520.0231
PRO 530.0228
PHE 540.0199
SER 550.0194
THR 560.0189
LYS 570.0168
ASN 580.0172
LEU 590.0167
ASP 600.0168
LEU 610.0158
SER 620.0149
PHE 630.0152
ASN 640.0157
PRO 650.0144
LEU 660.0133
ARG 670.0108
HIS 680.0105
LEU 690.0101
GLY 700.0113
SER 710.0108
TYR 720.0118
SER 730.0126
PHE 740.0128
PHE 750.0139
SER 760.0164
PHE 770.0148
PRO 780.0128
GLU 790.0136
LEU 800.0129
GLN 810.0123
VAL 820.0126
LEU 830.0114
ASP 840.0121
LEU 850.0105
SER 860.0108
ARG 870.0106
CYS 880.0108
GLU 890.0092
ILE 900.0078
GLN 910.0063
THR 920.0069
ILE 930.0065
GLU 940.0079
ASP 950.0073
GLY 960.0073
ALA 970.0079
TYR 980.0073
GLN 990.0071
SER 1000.0090
LEU 1010.0082
SER 1020.0059
HIS 1030.0080
LEU 1040.0078
SER 1050.0085
THR 1060.0089
LEU 1070.0075
ILE 1080.0084
LEU 1090.0067
THR 1100.0078
GLY 1110.0072
ASN 1120.0064
PRO 1130.0045
ILE 1140.0033
GLN 1150.0034
SER 1160.0046
LEU 1170.0035
ALA 1180.0047
LEU 1190.0040
GLY 1200.0044
ALA 1210.0040
PHE 1220.0025
SER 1230.0028
GLY 1240.0037
LEU 1250.0040
SER 1260.0033
SER 1270.0056
LEU 1280.0057
GLN 1290.0071
LYS 1300.0074
LEU 1310.0061
VAL 1320.0068
ALA 1330.0055
VAL 1340.0066
GLU 1350.0058
THR 1360.0043
ASN 1370.0033
LEU 1380.0035
ALA 1390.0035
SER 1400.0039
LEU 1410.0043
GLU 1420.0036
ASN 1430.0026
PHE 1440.0027
PRO 1450.0024
ILE 1460.0030
GLY 1470.0035
HIS 1480.0030
LEU 1490.0036
LYS 1500.0047
THR 1510.0055
LEU 1520.0059
LYS 1530.0070
GLU 1540.0070
LEU 1550.0064
ASN 1560.0066
VAL 1570.0059
ALA 1580.0065
HIS 1590.0062
ASN 1600.0054
LEU 1610.0050
ILE 1620.0053
GLN 1630.0054
SER 1640.0055
PHE 1650.0058
LYS 1660.0055
LEU 1670.0053
PRO 1680.0048
GLU 1690.0051
TYR 1700.0047
PHE 1710.0052
SER 1720.0059
ASN 1730.0053
LEU 1740.0055
THR 1750.0063
ASN 1760.0065
LEU 1770.0065
GLU 1780.0069
HIS 1790.0068
LEU 1800.0066
ASP 1810.0066
LEU 1820.0063
SER 1830.0066
SER 1840.0064
ASN 1850.0060
LYS 1860.0059
ILE 1870.0063
GLN 1880.0063
SER 1890.0062
ILE 1900.0060
TYR 1910.0060
CYS 1920.0058
THR 1930.0056
ASP 1940.0056
LEU 1950.0057
ARG 1960.0056
VAL 1970.0057
LEU 1980.0059
HIS 1990.0061
GLN 2000.0062
MET 2010.0062
PRO 2020.0069
LEU 2030.0069
LEU 2040.0067
ASN 2050.0069
LEU 2060.0067
SER 2070.0067
LEU 2080.0067
ASP 2090.0067
LEU 2100.0067
SER 2110.0068
LEU 2120.0067
ASN 2130.0066
PRO 2140.0068
MET 2150.0067
ASN 2160.0068
PHE 2170.0064
ILE 2180.0062
GLN 2190.0061
PRO 2200.0061
GLY 2210.0059
ALA 2220.0059
PHE 2230.0060
LYS 2240.0060
GLU 2250.0060
ILE 2260.0059
ARG 2270.0063
LEU 2280.0063
HIS 2290.0063
LYS 2300.0063
LEU 2310.0064
THR 2320.0064
LEU 2330.0066
ARG 2340.0067
ASN 2350.0069
ASN 2360.0070
PHE 2370.0071
ASP 2380.0075
SER 2390.0072
LEU 2400.0067
ASN 2410.0070
VAL 2420.0070
MET 2430.0066
LYS 2440.0064
THR 2450.0066
CYS 2460.0065
ILE 2470.0062
GLN 2480.0062
GLY 2490.0063
LEU 2500.0061
ALA 2510.0059
GLY 2520.0059
LEU 2530.0059
GLU 2540.0058
VAL 2550.0058
HIS 2560.0057
ARG 2570.0057
LEU 2580.0058
VAL 2590.0060
LEU 2600.0060
GLY 2610.0061
GLU 2620.0066
PHE 2630.0069
ARG 2640.0072
ASN 2650.0075
GLU 2660.0075
GLY 2670.0079
ASN 2680.0072
LEU 2690.0069
GLU 2700.0071
LYS 2710.0065
PHE 2720.0058
ASP 2730.0054
LYS 2740.0049
SER 2750.0054
ALA 2760.0056
LEU 2770.0053
GLU 2780.0053
GLY 2790.0055
LEU 2800.0052
CYS 2810.0049
ASN 2820.0054
LEU 2830.0053
THR 2840.0051
ILE 2850.0051
GLU 2860.0049
GLU 2870.0048
PHE 2880.0049
ARG 2890.0052
LEU 2900.0053
ALA 2910.0058
TYR 2920.0060
LEU 2930.0059
ASP 2940.0064
TYR 2950.0059
TYR 2960.0052
LEU 2970.0043
ASP 2980.0036
GLY 2990.0031
ILE 3000.0031
ILE 3010.0028
ASP 3020.0035
LEU 3030.0040
PHE 3040.0038
ASN 3050.0035
CYS 3060.0040
LEU 3070.0037
THR 3080.0028
ASN 3090.0028
VAL 3100.0034
SER 3110.0031
SER 3120.0036
PHE 3130.0037
SER 3140.0043
LEU 3150.0045
VAL 3160.0053
SER 3170.0058
VAL 3180.0051
THR 3190.0047
ILE 3200.0037
GLU 3210.0033
ARG 3220.0024
VAL 3230.0024
LYS 3240.0017
ASP 3250.0015
PHE 3260.0017
SER 3270.0012
TYR 3280.0010
ASN 3290.0010
PHE 3300.0015
GLY 3310.0015
TRP 3320.0020
GLN 3330.0021
HIS 3340.0029
LEU 3350.0032
GLU 3360.0040
LEU 3370.0042
VAL 3380.0053
ASN 3390.0061
CYS 3400.0052
LYS 3410.0051
PHE 3420.0044
GLY 3430.0041
GLN 3440.0039
PHE 3450.0042
PRO 3460.0033
THR 3470.0027
LEU 3480.0023
LYS 3490.0018
LEU 3500.0013
LYS 3510.0014
SER 3520.0007
LEU 3530.0016
LYS 3540.0021
ARG 3550.0030
LEU 3560.0035
THR 3570.0044
PHE 3580.0046
THR 3590.0058
SER 3600.0066
ASN 3610.0058
LYS 3620.0063
GLY 3630.0056
GLY 3640.0051
ASN 3650.0056
ALA 3660.0057
PHE 3670.0058
SER 3680.0051
GLU 3690.0047
VAL 3700.0038
ASP 3710.0033
LEU 3720.0028
PRO 3730.0030
SER 3740.0024
LEU 3750.0030
GLU 3760.0035
PHE 3770.0039
LEU 3780.0045
ASP 3790.0053
LEU 3800.0057
SER 3810.0067
ARG 3820.0074
ASN 3830.0070
GLY 3840.0077
LEU 3850.0070
SER 3860.0074
PHE 3870.0077
LYS 3880.0081
GLY 3890.0082
CYS 3900.0079
CYS 3910.0074
SER 3920.0067
GLN 3930.0058
SER 3940.0058
ASP 3950.0057
PHE 3960.0049
GLY 3970.0044
THR 3980.0044
ILE 3990.0050
SER 4000.0044
LEU 4010.0048
LYS 4020.0051
TYR 4030.0056
LEU 4040.0062
ASP 4050.0067
LEU 4060.0073
SER 4070.0082
PHE 4080.0087
ASN 4090.0085
GLY 4100.0090
VAL 4110.0093
ILE 4120.0092
THR 4130.0095
MET 4140.0092
SER 4150.0092
SER 4160.0084
ASN 4170.0083
PHE 4180.0074
LEU 4190.0072
GLY 4200.0064
LEU 4210.0063
GLU 4220.0066
GLN 4230.0059
LEU 4240.0062
GLU 4250.0062
HIS 4260.0065
LEU 4270.0074
ASP 4280.0080
PHE 4290.0087
GLN 4300.0092
HIS 4310.0099
SER 4320.0098
ASN 4330.0105
LEU 4340.0101
LYS 4350.0106
GLN 4360.0107
MET 4370.0100
SER 4380.0105
GLU 4390.0108
PHE 4400.0100
SER 4410.0091
VAL 4420.0090
PHE 4430.0082
LEU 4440.0083
SER 4450.0077
LEU 4460.0072
ARG 4470.0070
ASN 4480.0066
LEU 4490.0069
ILE 4500.0067
TYR 4510.0072
LEU 4520.0080
ASP 4530.0088
ILE 4540.0096
SER 4550.0099
HIS 4560.0109
THR 4570.0107
HIS 4580.0114
THR 4590.0108
ARG 4600.0111
VAL 4610.0104
ALA 4620.0105
PHE 4630.0100
ASN 4640.0091
GLY 4650.0089
ILE 4660.0090
PHE 4670.0084
ASN 4680.0083
GLY 4690.0078
LEU 4700.0073
SER 4710.0067
SER 4720.0065
LEU 4730.0070
GLU 4740.0067
VAL 4750.0075
LEU 4760.0081
LYS 4770.0088
MET 4780.0096
ALA 4790.0100
GLY 4800.0111
ASN 4810.0111
SER 4820.0109
PHE 4830.0102
GLN 4840.0109
GLU 4850.0104
ASN 4860.0096
PHE 4870.0082
LEU 4880.0075
PRO 4890.0075
ASP 4900.0069
ILE 4910.0077
PHE 4920.0066
THR 4930.0061
GLU 4940.0064
LEU 4950.0061
ARG 4960.0052
ASN 4970.0056
LEU 4980.0062
THR 4990.0065
PHE 5000.0074
LEU 5010.0075
ASP 5020.0087
LEU 5030.0088
SER 5040.0097
GLN 5050.0109
CYS 5060.0105
GLN 5070.0103
LEU 5080.0085
GLU 5090.0075
GLN 5100.0063
LEU 5110.0056
SER 5120.0053
PRO 5130.0041
THR 5140.0046
ALA 5150.0052
PHE 5160.0045
ASN 5170.0038
SER 5180.0041
LEU 5190.0044
SER 5200.0039
SER 5210.0050
LEU 5220.0056
GLN 5230.0070
VAL 5240.0080
LEU 5250.0075
ASN 5260.0088
MET 5270.0084
SER 5280.0102
HIS 5290.0112
ASN 5300.0097
ASN 5310.0088
PHE 5320.0067
PHE 5330.0061
SER 5340.0054
LEU 5350.0060
ASP 5360.0043
THR 5370.0052
PHE 5380.0039
PRO 5390.0029
TYR 5400.0040
LYS 5410.0043
CYS 5420.0034
LEU 5430.0041
ASN 5440.0048
SER 5450.0057
LEU 5460.0065
GLN 5470.0088
VAL 5480.0095
LEU 5490.0085
ASP 5500.0100
TYR 5510.0093
SER 5520.0120
LEU 5530.0127
ASN 5540.0102
HIS 5550.0093
ILE 5560.0081
MET 5570.0090
THR 5580.0081
SER 5590.0073
LYS 5600.0059
LYS 5610.0062
GLN 5620.0088
GLU 5630.0076
LEU 5640.0088
GLN 5650.0098
HIS 5660.0075
PHE 5670.0072
PRO 5680.0069
SER 5690.0088
SER 5700.0084
LEU 5710.0091
ALA 5720.0118
PHE 5730.0123
LEU 5740.0112
ASN 5750.0126
LEU 5760.0121
THR 5770.0150
GLN 5780.0153
ASN 5790.0126
ASP 5800.0121
PHE 5810.0123
ALA 5820.0125
CYS 5830.0154
THR 5840.0151
CYS 5850.0162
GLU 5860.0131
HIS 5870.0123
GLN 5880.0153
SER 5890.0140
PHE 5900.0120
LEU 5910.0148
GLN 5920.0166
TRP 5930.0143
ILE 5940.0149
LYS 5950.0180
ASP 5960.0171
GLN 5970.0156
ARG 5980.0172
GLN 5990.0170
LEU 6000.0142
LEU 6010.0150
VAL 6020.0167
GLU 6030.0191
VAL 6040.0192
GLU 6050.0215
ARG 6060.0197
MET 6070.0173
GLU 6080.0182
CYS 6090.0168
ALA 6100.0155
THR 6110.0140
PRO 6120.0162
SER 6130.0183
ASP 6140.0209
LYS 6150.0203
GLN 6160.0194
GLY 6170.0211
MET 6180.0216
PRO 6190.0209
VAL 6200.0184
LEU 6210.0202
SER 6220.0230
LEU 6230.0214
ASN 6240.0228
ILE 6250.0212
THR 6260.0229
CYS 6270.0224
GLU 10.0065
ALA 20.0067
ALA 30.0057
ALA 40.0038
LYS 50.0040
MET 60.0040
GLN 70.0028
ARG 80.0016
LEU 90.0018
VAL 100.0025
LEU 110.0021
LEU 120.0018
LEU 130.0019
ALA 140.0031
ILE 150.0035
SER 160.0029
LEU 170.0028
LEU 180.0038
LEU 190.0038
TYR 200.0030
GLN 210.0030
ASP 220.0036
LEU 230.0032
PRO 240.0024
VAL 250.0017
ARG 260.0017
SER 270.0021
GLU 280.0034
PHE 290.0040
GLU 300.0034
LEU 310.0034
ASP 320.0043
ARG 330.0047
ILE 340.0044
CYS 350.0050
GLY 360.0058
TYR 370.0047
GLY 380.0042
THR 390.0058
ALA 400.0063
ARG 410.0057
CYS 420.0061
ARG 430.0066
LYS 440.0072
LYS 450.0075
CYS 460.0068
ARG 470.0068
SER 480.0070
GLN 490.0065
GLU 500.0062
TYR 510.0063
ARG 520.0064
ILE 530.0058
GLY 540.0062
ARG 550.0065
CYS 560.0060
PRO 570.0059
ASN 580.0063
THR 590.0070
TYR 600.0069
ALA 610.0068
CYS 620.0058
CYS 630.0060
LEU 640.0054
ARG 650.0058
LYS 660.0064
TRP 670.0068
ASP 680.0066
GLU 690.0067
SER 700.0067
LEU 710.0068
LEU 720.0066
ASN 730.0060
ARG 740.0060
THR 750.0063
LYS 760.0041
PRO 770.0024
GLU 780.0026
ALA 790.0007
ALA 800.0016
ALA 810.0114
LYS 820.0099
LYS 830.0095
GLU 840.0093
MET 850.0082
ASN 860.0087
LEU 870.0063
SER 880.0069
VAL 890.0047
GLY 900.0057
LEU 910.0040
GLY 920.0048
GLY 930.0066
GLY 940.0092
SER 950.0081
ASN 960.0081
LEU 970.0069
SER 980.0083
VAL 990.0072
GLY 1000.0090
LEU 1010.0073
GLY 1020.0085
GLU 1030.0080
ILE 1040.0077
GLY 1050.0071
GLY 1060.0081
GLY 1070.0071
SER 1080.0050
LYS 1090.0052
LEU 1100.0045
LEU 1110.0038
ASP 1120.0057
ILE 1130.0047
ASN 1140.0070
LEU 1150.0058
GLY 1160.0075
ARG 1170.0090
GLY 1180.0056
GLY 1190.0055
GLY 1200.0055
SER 1210.0033
MET 1220.0054
VAL 1230.0038
ASP 1240.0061
LEU 1250.0051
THR 1260.0073
PHE 1270.0068
GLY 1280.0090
GLY 1290.0098
VAL 1300.0090
GLY 1310.0106
GLY 1320.0076
GLY 1330.0078
SER 1340.0053
THR 1350.0071
PHE 1360.0061
THR 1370.0081
PHE 1380.0081
PHE 1390.0103
PRO 1400.0107
LEU 1410.0106
VAL 1420.0113
ILE 1430.0102
GLY 1440.0122
GLY 1450.0114
GLY 1460.0129
SER 1470.0114
ASP 1480.0093
ALA 1490.0084
MET 1500.0070
TYR 1510.0063
LEU 1520.0046
GLY 1530.0057
PHE 1540.0044
ALA 1550.0057
ALA 1560.0044
GLY 1570.0067
GLY 1580.0069
GLY 1590.0092
SER 1600.0104
ALA 1610.0130
GLY 1620.0136
GLY 1630.0138
GLU 1640.0119
ASN 1650.0105
HIS 1660.0096
VAL 1670.0085
ALA 1680.0090
PHE 1690.0080
GLY 1700.0097
PRO 1710.0121
GLY 1720.0149
PRO 1730.0160
GLY 1740.0152
VAL 1750.0124
ASP 1760.0129
LEU 1770.0125
THR 1780.0136
PHE 1790.0138
GLY 1800.0158
GLY 1810.0175
VAL 1820.0178
GLN 1830.0168
PHE 1840.0165
ALA 1850.0171
MET 1860.0161
VAL 1870.0174
ASN 1880.0176
ASN 1890.0182
GLY 1900.0185
PRO 1910.0130
GLY 1920.0173
PRO 1930.0305
GLY 1940.0377
GLU 1950.0277
SER 1960.0251
PHE 1970.0226
THR 1980.0084
ALA 1990.0077
GLN 2000.0138
PRO 2010.0216
ALA 2020.0206
ASP 2030.0089
MET 2040.0171
GLN 2050.0117
ALA 2060.0285
GLY 2070.0472
ILE 2080.0256
LYS 2090.0363
GLY 2100.0341
PRO 2110.0110
GLY 2120.0085
PRO 2130.0191
GLY 2140.0355
GLY 2150.0278
SER 2160.0309
ILE 2170.0241
GLN 2180.0139
VAL 2190.0103
ILE 2200.0048
ASN 2210.0064
GLY 2220.0085
SER 2230.0197
THR 2240.0279
ILE 2250.0354
GLY 2260.0487
THR 2270.0550
GLY 2280.0535
SER 2290.0510
LYS 2300.0401
LYS 2310.0317
THR 2320.0239
ILE 2330.0213
LEU 2340.0148
ILE 2350.0101
TYR 2360.0062
SER 2370.0033
ILE 2380.0016
ILE 2390.0021
GLY 2400.0043
VAL 2410.0038
LYS 2420.0047
LYS 2430.0048
GLY 2440.0046
THR 2450.0045
LEU 2460.0034
ALA 2470.0064
TRP 2480.0078
ALA 2490.0094
ARG 2500.0118
THR 2510.0121
GLY 2520.0162
PHE 2530.0135
SER 2540.0165
PRO 2550.0184
ALA 2560.0145
LYS 2570.0184
LYS 2580.0252
LEU 2590.0255
ASN 2600.0340
ALA 2610.0328
GLY 2620.0262
VAL 2630.0214
VAL 2640.0164
ARG 2650.0103
VAL 2660.0074
PHE 2670.0054
PHE 2680.0051
LEU 2690.0039
ASN 2700.0038
GLN 2710.0035
LYS 2720.0061
LYS 2730.0069
ALA 2740.0053
LYS 2750.0068
ASP 2760.0102
VAL 2770.0105
LEU 2780.0076
ARG 2790.0135
LYS 2800.0186
THR 2810.0252
SER 2820.0321
ARG 2830.0320
PRO 2840.0400
MET 2850.0426
VAL 2860.0414
ASP 2870.0263
LEU 2880.0334
THR 2890.0255
PHE 2900.0390
GLY 2910.0461
GLY 2920.0655

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.