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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 24  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0605
GLU 270.0120
PRO 280.0113
CYS 290.0106
VAL 300.0121
GLU 310.0131
VAL 320.0130
VAL 330.0134
PRO 340.0143
ASN 350.0131
ILE 360.0113
THR 370.0104
TYR 380.0100
GLN 390.0094
CYS 400.0081
MET 410.0074
GLU 420.0069
LEU 430.0073
ASN 440.0057
PHE 450.0058
TYR 460.0052
LYS 470.0060
ILE 480.0065
PRO 490.0083
ASP 500.0101
ASN 510.0116
LEU 520.0111
PRO 530.0120
PHE 540.0112
SER 550.0109
THR 560.0095
LYS 570.0082
ASN 580.0077
LEU 590.0070
ASP 600.0066
LEU 610.0054
SER 620.0052
PHE 630.0051
ASN 640.0043
PRO 650.0034
LEU 660.0037
ARG 670.0038
HIS 680.0046
LEU 690.0049
GLY 700.0065
SER 710.0073
TYR 720.0074
SER 730.0063
PHE 740.0065
PHE 750.0082
SER 760.0089
PHE 770.0080
PRO 780.0081
GLU 790.0079
LEU 800.0064
GLN 810.0056
VAL 820.0052
LEU 830.0043
ASP 840.0045
LEU 850.0036
SER 860.0045
ARG 870.0044
CYS 880.0034
GLU 890.0037
ILE 900.0038
GLN 910.0051
THR 920.0055
ILE 930.0052
GLU 940.0065
ASP 950.0072
GLY 960.0067
ALA 970.0055
TYR 980.0050
GLN 990.0063
SER 1000.0068
LEU 1010.0054
SER 1020.0053
HIS 1030.0049
LEU 1040.0038
SER 1050.0034
THR 1060.0035
LEU 1070.0031
ILE 1080.0037
LEU 1090.0038
THR 1100.0049
GLY 1110.0054
ASN 1120.0045
PRO 1130.0055
ILE 1140.0055
GLN 1150.0068
SER 1160.0069
LEU 1170.0063
ALA 1180.0071
LEU 1190.0072
GLY 1200.0066
ALA 1210.0055
PHE 1220.0048
SER 1230.0056
GLY 1240.0053
LEU 1250.0041
SER 1260.0043
SER 1270.0033
LEU 1280.0030
GLN 1290.0029
LYS 1300.0033
LEU 1310.0038
VAL 1320.0042
ALA 1330.0048
VAL 1340.0056
GLU 1350.0062
THR 1360.0056
ASN 1370.0067
LEU 1380.0066
ALA 1390.0075
SER 1400.0073
LEU 1410.0065
GLU 1420.0073
ASN 1430.0070
PHE 1440.0061
PRO 1450.0058
ILE 1460.0052
GLY 1470.0057
HIS 1480.0052
LEU 1490.0043
LYS 1500.0042
THR 1510.0034
LEU 1520.0035
LYS 1530.0034
GLU 1540.0039
LEU 1550.0046
ASN 1560.0051
VAL 1570.0052
ALA 1580.0060
HIS 1590.0067
ASN 1600.0068
LEU 1610.0077
ILE 1620.0073
GLN 1630.0080
SER 1640.0079
PHE 1650.0073
LYS 1660.0073
LEU 1670.0067
PRO 1680.0069
GLU 1690.0068
TYR 1700.0062
PHE 1710.0057
SER 1720.0058
ASN 1730.0053
LEU 1740.0047
THR 1750.0044
ASN 1760.0037
LEU 1770.0040
GLU 1780.0038
HIS 1790.0043
LEU 1800.0050
ASP 1810.0054
LEU 1820.0060
SER 1830.0064
SER 1840.0070
ASN 1850.0072
LYS 1860.0080
ILE 1870.0077
GLN 1880.0083
SER 1890.0082
ILE 1900.0077
TYR 1910.0081
CYS 1920.0079
THR 1930.0079
ASP 1940.0074
LEU 1950.0069
ARG 1960.0071
VAL 1970.0065
LEU 1980.0061
HIS 1990.0064
GLN 2000.0063
MET 2010.0056
PRO 2020.0054
LEU 2030.0046
LEU 2040.0046
ASN 2050.0041
LEU 2060.0046
SER 2070.0046
LEU 2080.0053
ASP 2090.0057
LEU 2100.0063
SER 2110.0066
LEU 2120.0071
ASN 2130.0074
PRO 2140.0081
MET 2150.0080
ASN 2160.0086
PHE 2170.0083
ILE 2180.0078
GLN 2190.0081
PRO 2200.0079
GLY 2210.0076
ALA 2220.0073
PHE 2230.0067
LYS 2240.0067
GLU 2250.0062
ILE 2260.0059
ARG 2270.0051
LEU 2280.0049
HIS 2290.0043
LYS 2300.0048
LEU 2310.0054
THR 2320.0055
LEU 2330.0062
ARG 2340.0064
ASN 2350.0071
ASN 2360.0073
PHE 2370.0077
ASP 2380.0082
SER 2390.0081
LEU 2400.0078
ASN 2410.0080
VAL 2420.0082
MET 2430.0075
LYS 2440.0075
THR 2450.0078
CYS 2460.0074
ILE 2470.0070
GLN 2480.0073
GLY 2490.0073
LEU 2500.0067
ALA 2510.0067
GLY 2520.0063
LEU 2530.0059
GLU 2540.0052
VAL 2550.0050
HIS 2560.0043
ARG 2570.0046
LEU 2580.0050
VAL 2590.0053
LEU 2600.0058
GLY 2610.0062
GLU 2620.0065
PHE 2630.0068
ARG 2640.0072
ASN 2650.0077
GLU 2660.0078
GLY 2670.0079
ASN 2680.0075
LEU 2690.0074
GLU 2700.0080
LYS 2710.0076
PHE 2720.0066
ASP 2730.0067
LYS 2740.0064
SER 2750.0066
ALA 2760.0063
LEU 2770.0062
GLU 2780.0063
GLY 2790.0063
LEU 2800.0058
CYS 2810.0057
ASN 2820.0060
LEU 2830.0056
THR 2840.0050
ILE 2850.0048
GLU 2860.0043
GLU 2870.0043
PHE 2880.0047
ARG 2890.0050
LEU 2900.0055
ALA 2910.0057
TYR 2920.0059
LEU 2930.0059
ASP 2940.0061
TYR 2950.0059
TYR 2960.0057
LEU 2970.0059
ASP 2980.0058
GLY 2990.0055
ILE 3000.0054
ILE 3010.0053
ASP 3020.0055
LEU 3030.0057
PHE 3040.0053
ASN 3050.0051
CYS 3060.0052
LEU 3070.0048
THR 3080.0045
ASN 3090.0042
VAL 3100.0043
SER 3110.0040
SER 3120.0042
PHE 3130.0045
SER 3140.0048
LEU 3150.0052
VAL 3160.0056
SER 3170.0060
VAL 3180.0058
THR 3190.0059
ILE 3200.0056
GLU 3210.0056
ARG 3220.0054
VAL 3230.0052
LYS 3240.0049
ASP 3250.0048
PHE 3260.0047
SER 3270.0043
TYR 3280.0043
ASN 3290.0040
PHE 3300.0042
GLY 3310.0040
TRP 3320.0040
GLN 3330.0038
HIS 3340.0041
LEU 3350.0044
GLU 3360.0047
LEU 3370.0052
VAL 3380.0056
ASN 3390.0059
CYS 3400.0057
LYS 3410.0058
PHE 3420.0059
GLY 3430.0060
GLN 3440.0056
PHE 3450.0054
PRO 3460.0051
THR 3470.0047
LEU 3480.0044
LYS 3490.0040
LEU 3500.0039
LYS 3510.0036
SER 3520.0036
LEU 3530.0038
LYS 3540.0037
ARG 3550.0040
LEU 3560.0043
THR 3570.0047
PHE 3580.0050
THR 3590.0053
SER 3600.0058
ASN 3610.0057
LYS 3620.0061
GLY 3630.0060
GLY 3640.0058
ASN 3650.0057
ALA 3660.0055
PHE 3670.0055
SER 3680.0051
GLU 3690.0047
VAL 3700.0044
ASP 3710.0040
LEU 3720.0039
PRO 3730.0036
SER 3740.0036
LEU 3750.0038
GLU 3760.0038
PHE 3770.0040
LEU 3780.0043
ASP 3790.0047
LEU 3800.0050
SER 3810.0054
ARG 3820.0058
ASN 3830.0058
GLY 3840.0061
LEU 3850.0058
SER 3860.0058
PHE 3870.0059
LYS 3880.0060
GLY 3890.0057
CYS 3900.0054
CYS 3910.0051
SER 3920.0046
GLN 3930.0042
SER 3940.0044
ASP 3950.0047
PHE 3960.0044
GLY 3970.0040
THR 3980.0038
ILE 3990.0037
SER 4000.0036
LEU 4010.0038
LYS 4020.0038
TYR 4030.0041
LEU 4040.0045
ASP 4050.0049
LEU 4060.0053
SER 4070.0055
PHE 4080.0061
ASN 4090.0062
GLY 4100.0066
VAL 4110.0065
ILE 4120.0064
THR 4130.0065
MET 4140.0061
SER 4150.0060
SER 4160.0054
ASN 4170.0052
PHE 4180.0046
LEU 4190.0044
GLY 4200.0039
LEU 4210.0039
GLU 4220.0037
GLN 4230.0034
LEU 4240.0038
GLU 4250.0036
HIS 4260.0040
LEU 4270.0045
ASP 4280.0050
PHE 4290.0056
GLN 4300.0059
HIS 4310.0065
SER 4320.0066
ASN 4330.0071
LEU 4340.0066
LYS 4350.0070
GLN 4360.0070
MET 4370.0066
SER 4380.0070
GLU 4390.0073
PHE 4400.0066
SER 4410.0058
VAL 4420.0057
PHE 4430.0049
LEU 4440.0049
SER 4450.0044
LEU 4460.0040
ARG 4470.0035
ASN 4480.0032
LEU 4490.0035
ILE 4500.0032
TYR 4510.0038
LEU 4520.0044
ASP 4530.0051
ILE 4540.0057
SER 4550.0060
HIS 4560.0068
THR 4570.0070
HIS 4580.0076
THR 4590.0071
ARG 4600.0075
VAL 4610.0069
ALA 4620.0076
PHE 4630.0071
ASN 4640.0065
GLY 4650.0061
ILE 4660.0059
PHE 4670.0051
ASN 4680.0051
GLY 4690.0045
LEU 4700.0039
SER 4710.0034
SER 4720.0028
LEU 4730.0032
GLU 4740.0028
VAL 4750.0035
LEU 4760.0041
LYS 4770.0048
MET 4780.0055
ALA 4790.0059
GLY 4800.0069
ASN 4810.0071
SER 4820.0074
PHE 4830.0074
GLN 4840.0083
GLU 4850.0085
ASN 4860.0075
PHE 4870.0068
LEU 4880.0058
PRO 4890.0062
ASP 4900.0056
ILE 4910.0055
PHE 4920.0042
THR 4930.0045
GLU 4940.0042
LEU 4950.0033
ARG 4960.0028
ASN 4970.0022
LEU 4980.0024
THR 4990.0024
PHE 5000.0031
LEU 5010.0034
ASP 5020.0043
LEU 5030.0049
SER 5040.0055
GLN 5050.0067
CYS 5060.0068
GLN 5070.0072
LEU 5080.0061
GLU 5090.0061
GLN 5100.0058
LEU 5110.0051
SER 5120.0056
PRO 5130.0050
THR 5140.0051
ALA 5150.0045
PHE 5160.0034
ASN 5170.0040
SER 5180.0038
LEU 5190.0027
SER 5200.0029
SER 5210.0024
LEU 5220.0021
GLN 5230.0029
VAL 5240.0032
LEU 5250.0029
ASN 5260.0040
MET 5270.0041
SER 5280.0052
HIS 5290.0064
ASN 5300.0060
ASN 5310.0061
PHE 5320.0046
PHE 5330.0040
SER 5340.0028
LEU 5350.0022
ASP 5360.0030
THR 5370.0029
PHE 5380.0041
PRO 5390.0035
TYR 5400.0028
LYS 5410.0041
CYS 5420.0041
LEU 5430.0030
ASN 5440.0040
SER 5450.0035
LEU 5460.0031
GLN 5470.0044
VAL 5480.0042
LEU 5490.0032
ASP 5500.0042
TYR 5510.0038
SER 5520.0054
LEU 5530.0064
ASN 5540.0053
HIS 5550.0049
ILE 5560.0032
MET 5570.0027
THR 5580.0021
SER 5590.0027
LYS 5600.0039
LYS 5610.0050
GLN 5620.0055
GLU 5630.0052
LEU 5640.0045
GLN 5650.0060
HIS 5660.0052
PHE 5670.0042
PRO 5680.0048
SER 5690.0062
SER 5700.0055
LEU 5710.0049
ALA 5720.0064
PHE 5730.0059
LEU 5740.0047
ASN 5750.0054
LEU 5760.0047
THR 5770.0065
GLN 5780.0070
ASN 5790.0053
ASP 5800.0049
PHE 5810.0038
ALA 5820.0030
CYS 5830.0039
THR 5840.0031
CYS 5850.0042
GLU 5860.0035
HIS 5870.0032
GLN 5880.0050
SER 5890.0055
PHE 5900.0041
LEU 5910.0049
GLN 5920.0066
TRP 5930.0061
ILE 5940.0059
LYS 5950.0079
ASP 5960.0083
GLN 5970.0077
ARG 5980.0082
GLN 5990.0089
LEU 6000.0071
LEU 6010.0069
VAL 6020.0080
GLU 6030.0091
VAL 6040.0087
GLU 6050.0099
ARG 6060.0090
MET 6070.0072
GLU 6080.0073
CYS 6090.0060
ALA 6100.0059
THR 6110.0047
PRO 6120.0046
SER 6130.0066
ASP 6140.0070
LYS 6150.0069
GLN 6160.0075
GLY 6170.0089
MET 6180.0087
PRO 6190.0086
VAL 6200.0069
LEU 6210.0084
SER 6220.0096
LEU 6230.0079
ASN 6240.0083
ILE 6250.0078
THR 6260.0083
CYS 6270.0073
GLU 10.0042
ALA 20.0031
ALA 30.0034
ALA 40.0039
LYS 50.0030
MET 60.0028
GLN 70.0036
ARG 80.0033
LEU 90.0027
VAL 100.0035
LEU 110.0037
LEU 120.0030
LEU 130.0033
ALA 140.0041
ILE 150.0037
SER 160.0034
LEU 170.0039
LEU 180.0040
LEU 190.0036
TYR 200.0038
GLN 210.0040
ASP 220.0040
LEU 230.0037
PRO 240.0040
VAL 250.0041
ARG 260.0036
SER 270.0035
GLU 280.0037
PHE 290.0036
GLU 300.0036
LEU 310.0035
ASP 320.0035
ARG 330.0036
ILE 340.0038
CYS 350.0039
GLY 360.0046
TYR 370.0043
GLY 380.0041
THR 390.0045
ALA 400.0045
ARG 410.0037
CYS 420.0035
ARG 430.0035
LYS 440.0034
LYS 450.0035
CYS 460.0032
ARG 470.0032
SER 480.0034
GLN 490.0035
GLU 500.0034
TYR 510.0038
ARG 520.0038
ILE 530.0037
GLY 540.0036
ARG 550.0036
CYS 560.0036
PRO 570.0035
ASN 580.0035
THR 590.0035
TYR 600.0035
ALA 610.0036
CYS 620.0034
CYS 630.0035
LEU 640.0037
ARG 650.0039
LYS 660.0042
TRP 670.0048
ASP 680.0049
GLU 690.0053
SER 700.0055
LEU 710.0060
LEU 720.0062
ASN 730.0063
ARG 740.0066
THR 750.0070
LYS 760.0073
PRO 770.0079
GLU 780.0074
ALA 790.0090
ALA 800.0101
ALA 810.0239
LYS 820.0229
LYS 830.0200
GLU 840.0174
MET 850.0151
ASN 860.0135
LEU 870.0106
SER 880.0098
VAL 890.0091
GLY 900.0108
LEU 910.0122
GLY 920.0155
GLY 930.0146
GLY 940.0111
SER 950.0093
ASN 960.0081
LEU 970.0082
SER 980.0096
VAL 990.0105
GLY 1000.0142
LEU 1010.0158
GLY 1020.0203
GLU 1030.0229
ILE 1040.0239
GLY 1050.0265
GLY 1060.0246
GLY 1070.0183
SER 1080.0126
LYS 1090.0104
LEU 1100.0063
LEU 1110.0069
ASP 1120.0091
ILE 1130.0094
ASN 1140.0131
LEU 1150.0145
GLY 1160.0178
ARG 1170.0223
GLY 1180.0214
GLY 1190.0238
GLY 1200.0235
SER 1210.0190
MET 1220.0192
VAL 1230.0147
ASP 1240.0157
LEU 1250.0133
THR 1260.0156
PHE 1270.0149
GLY 1280.0184
GLY 1290.0213
VAL 1300.0212
GLY 1310.0203
GLY 1320.0156
GLY 1330.0145
SER 1340.0110
THR 1350.0121
PHE 1360.0120
THR 1370.0126
PHE 1380.0137
PHE 1390.0152
PRO 1400.0177
LEU 1410.0165
VAL 1420.0182
ILE 1430.0163
GLY 1440.0187
GLY 1450.0180
GLY 1460.0234
SER 1470.0209
ASP 1480.0192
ALA 1490.0162
MET 1500.0142
TYR 1510.0103
LEU 1520.0090
GLY 1530.0082
PHE 1540.0078
ALA 1550.0077
ALA 1560.0069
GLY 1570.0071
GLY 1580.0041
GLY 1590.0084
SER 1600.0115
ALA 1610.0260
GLY 1620.0280
GLY 1630.0287
GLU 1640.0258
ASN 1650.0234
HIS 1660.0216
VAL 1670.0205
ALA 1680.0223
PHE 1690.0224
GLY 1700.0268
PRO 1710.0325
GLY 1720.0380
PRO 1730.0395
GLY 1740.0365
VAL 1750.0295
ASP 1760.0299
LEU 1770.0279
THR 1780.0297
PHE 1790.0298
GLY 1800.0336
GLY 1810.0380
VAL 1820.0387
GLN 1830.0374
PHE 1840.0363
ALA 1850.0386
MET 1860.0380
VAL 1870.0444
ASN 1880.0450
ASN 1890.0483
GLY 1900.0503
PRO 1910.0424
GLY 1920.0348
PRO 1930.0420
GLY 1940.0435
GLU 1950.0322
SER 1960.0494
PHE 1970.0370
THR 1980.0390
ALA 1990.0321
GLN 2000.0232
PRO 2010.0192
ALA 2020.0097
ASP 2030.0107
MET 2040.0219
GLN 2050.0283
ALA 2060.0326
GLY 2070.0259
ILE 2080.0230
LYS 2090.0216
GLY 2100.0202
PRO 2110.0199
GLY 2120.0195
PRO 2130.0169
GLY 2140.0147
GLY 2150.0168
SER 2160.0228
ILE 2170.0157
GLN 2180.0235
VAL 2190.0201
ILE 2200.0297
ASN 2210.0373
GLY 2220.0381
SER 2230.0424
THR 2240.0437
ILE 2250.0454
GLY 2260.0576
THR 2270.0605
GLY 2280.0573
SER 2290.0499
LYS 2300.0418
LYS 2310.0332
THR 2320.0302
ILE 2330.0220
LEU 2340.0220
ILE 2350.0099
TYR 2360.0086
SER 2370.0046
ILE 2380.0004
ILE 2390.0047
GLY 2400.0035
VAL 2410.0048
LYS 2420.0048
LYS 2430.0064
GLY 2440.0072
THR 2450.0062
LEU 2460.0098
ALA 2470.0112
TRP 2480.0175
ALA 2490.0207
ARG 2500.0265
THR 2510.0285
GLY 2520.0371
PHE 2530.0333
SER 2540.0420
PRO 2550.0389
ALA 2560.0372
LYS 2570.0370
LYS 2580.0235
LEU 2590.0137
ASN 2600.0052
ALA 2610.0142
GLY 2620.0088
VAL 2630.0133
VAL 2640.0089
ARG 2650.0120
VAL 2660.0095
PHE 2670.0077
PHE 2680.0066
LEU 2690.0054
ASN 2700.0035
GLN 2710.0004
LYS 2720.0029
LYS 2730.0039
ALA 2740.0020
LYS 2750.0036
ASP 2760.0060
VAL 2770.0059
LEU 2780.0057
ARG 2790.0090
LYS 2800.0102
THR 2810.0117
SER 2820.0130
ARG 2830.0108
PRO 2840.0118
MET 2850.0088
VAL 2860.0093
ASP 2870.0088
LEU 2880.0045
THR 2890.0061
PHE 2900.0097
GLY 2910.0156
GLY 2920.0180

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.