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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 26  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0969
GLU 270.0063
PRO 280.0065
CYS 290.0056
VAL 300.0060
GLU 310.0063
VAL 320.0062
VAL 330.0064
PRO 340.0067
ASN 350.0057
ILE 360.0051
THR 370.0047
TYR 380.0046
GLN 390.0044
CYS 400.0042
MET 410.0038
GLU 420.0043
LEU 430.0051
ASN 440.0052
PHE 450.0046
TYR 460.0048
LYS 470.0040
ILE 480.0032
PRO 490.0039
ASP 500.0041
ASN 510.0050
LEU 520.0045
PRO 530.0046
PHE 540.0036
SER 550.0041
THR 560.0038
LYS 570.0036
ASN 580.0034
LEU 590.0028
ASP 600.0027
LEU 610.0026
SER 620.0023
PHE 630.0029
ASN 640.0035
PRO 650.0040
LEU 660.0034
ARG 670.0037
HIS 680.0034
LEU 690.0026
GLY 700.0028
SER 710.0023
TYR 720.0016
SER 730.0019
PHE 740.0014
PHE 750.0014
SER 760.0022
PHE 770.0020
PRO 780.0020
GLU 790.0028
LEU 800.0024
GLN 810.0028
VAL 820.0023
LEU 830.0014
ASP 840.0013
LEU 850.0012
SER 860.0012
ARG 870.0019
CYS 880.0024
GLU 890.0031
ILE 900.0029
GLN 910.0036
THR 920.0035
ILE 930.0028
GLU 940.0030
ASP 950.0030
GLY 960.0022
ALA 970.0018
TYR 980.0013
GLN 990.0016
SER 1000.0012
LEU 1010.0015
SER 1020.0024
HIS 1030.0027
LEU 1040.0021
SER 1050.0027
THR 1060.0020
LEU 1070.0015
ILE 1080.0012
LEU 1090.0013
THR 1100.0013
GLY 1110.0017
ASN 1120.0022
PRO 1130.0030
ILE 1140.0032
GLN 1150.0041
SER 1160.0041
LEU 1170.0034
ALA 1180.0037
LEU 1190.0038
GLY 1200.0032
ALA 1210.0027
PHE 1220.0025
SER 1230.0028
GLY 1240.0024
LEU 1250.0025
SER 1260.0031
SER 1270.0031
LEU 1280.0028
GLN 1290.0029
LYS 1300.0025
LEU 1310.0024
VAL 1320.0019
ALA 1330.0021
VAL 1340.0021
GLU 1350.0022
THR 1360.0023
ASN 1370.0027
LEU 1380.0029
ALA 1390.0035
SER 1400.0037
LEU 1410.0036
GLU 1420.0040
ASN 1430.0038
PHE 1440.0034
PRO 1450.0034
ILE 1460.0034
GLY 1470.0040
HIS 1480.0038
LEU 1490.0034
LYS 1500.0039
THR 1510.0036
LEU 1520.0032
LYS 1530.0031
GLU 1540.0028
LEU 1550.0028
ASN 1560.0025
VAL 1570.0024
ALA 1580.0024
HIS 1590.0024
ASN 1600.0025
LEU 1610.0029
ILE 1620.0034
GLN 1630.0037
SER 1640.0038
PHE 1650.0038
LYS 1660.0040
LEU 1670.0041
PRO 1680.0043
GLU 1690.0046
TYR 1700.0043
PHE 1710.0041
SER 1720.0046
ASN 1730.0044
LEU 1740.0039
THR 1750.0041
ASN 1760.0037
LEU 1770.0033
GLU 1780.0031
HIS 1790.0028
LEU 1800.0029
ASP 1810.0028
LEU 1820.0028
SER 1830.0027
SER 1840.0027
ASN 1850.0028
LYS 1860.0030
ILE 1870.0035
GLN 1880.0037
SER 1890.0039
ILE 1900.0039
TYR 1910.0042
CYS 1920.0044
THR 1930.0046
ASP 1940.0043
LEU 1950.0042
ARG 1960.0045
VAL 1970.0045
LEU 1980.0042
HIS 1990.0044
GLN 2000.0047
MET 2010.0043
PRO 2020.0043
LEU 2030.0041
LEU 2040.0038
ASN 2050.0034
LEU 2060.0032
SER 2070.0029
LEU 2080.0030
ASP 2090.0029
LEU 2100.0030
SER 2110.0029
LEU 2120.0029
ASN 2130.0031
PRO 2140.0033
MET 2150.0035
ASN 2160.0037
PHE 2170.0039
ILE 2180.0039
GLN 2190.0041
PRO 2200.0041
GLY 2210.0041
ALA 2220.0041
PHE 2230.0038
LYS 2240.0039
GLU 2250.0039
ILE 2260.0037
ARG 2270.0034
LEU 2280.0031
HIS 2290.0029
LYS 2300.0028
LEU 2310.0029
THR 2320.0028
LEU 2330.0029
ARG 2340.0028
ASN 2350.0029
ASN 2360.0030
PHE 2370.0032
ASP 2380.0033
SER 2390.0033
LEU 2400.0032
ASN 2410.0034
VAL 2420.0035
MET 2430.0033
LYS 2440.0034
THR 2450.0036
CYS 2460.0035
ILE 2470.0034
GLN 2480.0036
GLY 2490.0037
LEU 2500.0034
ALA 2510.0035
GLY 2520.0035
LEU 2530.0033
GLU 2540.0032
VAL 2550.0030
HIS 2560.0028
ARG 2570.0027
LEU 2580.0027
VAL 2590.0027
LEU 2600.0028
GLY 2610.0028
GLU 2620.0026
PHE 2630.0026
ARG 2640.0026
ASN 2650.0026
GLU 2660.0026
GLY 2670.0029
ASN 2680.0028
LEU 2690.0029
GLU 2700.0030
LYS 2710.0029
PHE 2720.0029
ASP 2730.0031
LYS 2740.0030
SER 2750.0030
ALA 2760.0029
LEU 2770.0031
GLU 2780.0032
GLY 2790.0032
LEU 2800.0030
CYS 2810.0030
ASN 2820.0033
LEU 2830.0031
THR 2840.0030
ILE 2850.0028
GLU 2860.0027
GLU 2870.0026
PHE 2880.0027
ARG 2890.0027
LEU 2900.0028
ALA 2910.0028
TYR 2920.0029
LEU 2930.0026
ASP 2940.0024
TYR 2950.0022
TYR 2960.0021
LEU 2970.0032
ASP 2980.0035
GLY 2990.0034
ILE 3000.0031
ILE 3010.0033
ASP 3020.0033
LEU 3030.0032
PHE 3040.0030
ASN 3050.0031
CYS 3060.0030
LEU 3070.0029
THR 3080.0030
ASN 3090.0028
VAL 3100.0028
SER 3110.0027
SER 3120.0026
PHE 3130.0028
SER 3140.0028
LEU 3150.0029
VAL 3160.0029
SER 3170.0030
VAL 3180.0031
THR 3190.0032
ILE 3200.0034
GLU 3210.0036
ARG 3220.0037
VAL 3230.0035
LYS 3240.0036
ASP 3250.0035
PHE 3260.0032
SER 3270.0032
TYR 3280.0032
ASN 3290.0030
PHE 3300.0030
GLY 3310.0028
TRP 3320.0028
GLN 3330.0026
HIS 3340.0026
LEU 3350.0028
GLU 3360.0028
LEU 3370.0031
VAL 3380.0031
ASN 3390.0032
CYS 3400.0033
LYS 3410.0035
PHE 3420.0037
GLY 3430.0039
GLN 3440.0038
PHE 3450.0035
PRO 3460.0034
THR 3470.0032
LEU 3480.0030
LYS 3490.0029
LEU 3500.0028
LYS 3510.0027
SER 3520.0026
LEU 3530.0026
LYS 3540.0024
ARG 3550.0025
LEU 3560.0027
THR 3570.0027
PHE 3580.0031
THR 3590.0033
SER 3600.0037
ASN 3610.0039
LYS 3620.0038
GLY 3630.0040
GLY 3640.0039
ASN 3650.0036
ALA 3660.0034
PHE 3670.0029
SER 3680.0029
GLU 3690.0026
VAL 3700.0026
ASP 3710.0025
LEU 3720.0024
PRO 3730.0022
SER 3740.0022
LEU 3750.0022
GLU 3760.0020
PHE 3770.0020
LEU 3780.0023
ASP 3790.0027
LEU 3800.0029
SER 3810.0031
ARG 3820.0039
ASN 3830.0040
GLY 3840.0040
LEU 3850.0034
SER 3860.0030
PHE 3870.0022
LYS 3880.0018
GLY 3890.0013
CYS 3900.0014
CYS 3910.0013
SER 3920.0011
GLN 3930.0012
SER 3940.0016
ASP 3950.0018
PHE 3960.0020
GLY 3970.0019
THR 3980.0017
ILE 3990.0011
SER 4000.0013
LEU 4010.0016
LYS 4020.0016
TYR 4030.0020
LEU 4040.0020
ASP 4050.0025
LEU 4060.0024
SER 4070.0030
PHE 4080.0038
ASN 4090.0033
GLY 4100.0032
VAL 4110.0023
ILE 4120.0019
THR 4130.0014
MET 4140.0014
SER 4150.0011
SER 4160.0011
ASN 4170.0015
PHE 4180.0013
LEU 4190.0011
GLY 4200.0010
LEU 4210.0013
GLU 4220.0015
GLN 4230.0017
LEU 4240.0019
GLU 4250.0025
HIS 4260.0027
LEU 4270.0024
ASP 4280.0028
PHE 4290.0027
GLN 4300.0035
HIS 4310.0036
SER 4320.0028
ASN 4330.0025
LEU 4340.0022
LYS 4350.0019
GLN 4360.0018
MET 4370.0025
SER 4380.0027
GLU 4390.0023
PHE 4400.0025
SER 4410.0027
VAL 4420.0023
PHE 4430.0026
LEU 4440.0026
SER 4450.0023
LEU 4460.0026
ARG 4470.0032
ASN 4480.0032
LEU 4490.0032
ILE 4500.0038
TYR 4510.0038
LEU 4520.0035
ASP 4530.0036
ILE 4540.0034
SER 4550.0039
HIS 4560.0037
THR 4570.0032
HIS 4580.0031
THR 4590.0032
ARG 4600.0033
VAL 4610.0036
ALA 4620.0033
PHE 4630.0033
ASN 4640.0037
GLY 4650.0035
ILE 4660.0034
PHE 4670.0038
ASN 4680.0038
GLY 4690.0037
LEU 4700.0040
SER 4710.0045
SER 4720.0047
LEU 4730.0045
GLU 4740.0049
VAL 4750.0047
LEU 4760.0044
LYS 4770.0043
MET 4780.0042
ALA 4790.0042
GLY 4800.0041
ASN 4810.0039
SER 4820.0035
PHE 4830.0036
GLN 4840.0035
GLU 4850.0033
ASN 4860.0033
PHE 4870.0034
LEU 4880.0037
PRO 4890.0040
ASP 4900.0044
ILE 4910.0045
PHE 4920.0046
THR 4930.0050
GLU 4940.0050
LEU 4950.0050
ARG 4960.0054
ASN 4970.0057
LEU 4980.0053
THR 4990.0054
PHE 5000.0051
LEU 5010.0047
ASP 5020.0045
LEU 5030.0043
SER 5040.0041
GLN 5050.0039
CYS 5060.0040
GLN 5070.0031
LEU 5080.0031
GLU 5090.0026
GLN 5100.0030
LEU 5110.0035
SER 5120.0040
PRO 5130.0041
THR 5140.0047
ALA 5150.0045
PHE 5160.0047
ASN 5170.0052
SER 5180.0058
LEU 5190.0055
SER 5200.0059
SER 5210.0061
LEU 5220.0056
GLN 5230.0054
VAL 5240.0050
LEU 5250.0045
ASN 5260.0041
MET 5270.0035
SER 5280.0034
HIS 5290.0033
ASN 5300.0028
ASN 5310.0019
PHE 5320.0015
PHE 5330.0018
SER 5340.0021
LEU 5350.0017
ASP 5360.0028
THR 5370.0028
PHE 5380.0041
PRO 5390.0043
TYR 5400.0042
LYS 5410.0048
CYS 5420.0056
LEU 5430.0053
ASN 5440.0058
SER 5450.0059
LEU 5460.0049
GLN 5470.0048
VAL 5480.0045
LEU 5490.0036
ASP 5500.0035
TYR 5510.0025
SER 5520.0035
LEU 5530.0037
ASN 5540.0022
HIS 5550.0021
ILE 5560.0020
MET 5570.0039
THR 5580.0041
SER 5590.0036
LYS 5600.0048
LYS 5610.0051
GLN 5620.0052
GLU 5630.0045
LEU 5640.0030
GLN 5650.0032
HIS 5660.0038
PHE 5670.0031
PRO 5680.0041
SER 5690.0041
SER 5700.0047
LEU 5710.0037
ALA 5720.0037
PHE 5730.0040
LEU 5740.0028
ASN 5750.0037
LEU 5760.0030
THR 5770.0049
GLN 5780.0054
ASN 5790.0040
ASP 5800.0047
PHE 5810.0052
ALA 5820.0071
CYS 5830.0085
THR 5840.0098
CYS 5850.0105
GLU 5860.0097
HIS 5870.0075
GLN 5880.0081
SER 5890.0068
PHE 5900.0050
LEU 5910.0060
GLN 5920.0061
TRP 5930.0042
ILE 5940.0040
LYS 5950.0051
ASP 5960.0038
GLN 5970.0025
ARG 5980.0038
GLN 5990.0034
LEU 6000.0029
LEU 6010.0037
VAL 6020.0055
GLU 6030.0070
VAL 6040.0066
GLU 6050.0085
ARG 6060.0078
MET 6070.0065
GLU 6080.0078
CYS 6090.0080
ALA 6100.0079
THR 6110.0085
PRO 6120.0107
SER 6130.0118
ASP 6140.0133
LYS 6150.0116
GLN 6160.0107
GLY 6170.0106
MET 6180.0105
PRO 6190.0091
VAL 6200.0075
LEU 6210.0075
SER 6220.0099
LEU 6230.0100
ASN 6240.0113
ILE 6250.0104
THR 6260.0123
CYS 6270.0141
GLU 10.0031
ALA 20.0028
ALA 30.0025
ALA 40.0028
LYS 50.0028
MET 60.0024
GLN 70.0025
ARG 80.0027
LEU 90.0026
VAL 100.0024
LEU 110.0025
LEU 120.0026
LEU 130.0025
ALA 140.0025
ILE 150.0026
SER 160.0023
LEU 170.0025
LEU 180.0025
LEU 190.0023
TYR 200.0024
GLN 210.0026
ASP 220.0023
LEU 230.0021
PRO 240.0025
VAL 250.0026
ARG 260.0026
SER 270.0026
GLU 280.0026
PHE 290.0026
GLU 300.0025
LEU 310.0024
ASP 320.0025
ARG 330.0025
ILE 340.0024
CYS 350.0025
GLY 360.0022
TYR 370.0023
GLY 380.0025
THR 390.0027
ALA 400.0026
ARG 410.0025
CYS 420.0027
ARG 430.0029
LYS 440.0032
LYS 450.0033
CYS 460.0030
ARG 470.0030
SER 480.0032
GLN 490.0029
GLU 500.0028
TYR 510.0030
ARG 520.0032
ILE 530.0031
GLY 540.0033
ARG 550.0034
CYS 560.0031
PRO 570.0032
ASN 580.0032
THR 590.0035
TYR 600.0032
ALA 610.0031
CYS 620.0029
CYS 630.0028
LEU 640.0026
ARG 650.0025
LYS 660.0028
TRP 670.0028
ASP 680.0029
GLU 690.0028
SER 700.0029
LEU 710.0030
LEU 720.0032
ASN 730.0031
ARG 740.0028
THR 750.0030
LYS 760.0055
PRO 770.0071
GLU 780.0061
ALA 790.0088
ALA 800.0113
ALA 810.0197
LYS 820.0205
LYS 830.0180
GLU 840.0168
MET 850.0155
ASN 860.0147
LEU 870.0125
SER 880.0118
VAL 890.0115
GLY 900.0114
LEU 910.0142
GLY 920.0154
GLY 930.0178
GLY 940.0166
SER 950.0170
ASN 960.0153
LEU 970.0155
SER 980.0157
VAL 990.0159
GLY 1000.0178
LEU 1010.0189
GLY 1020.0238
GLU 1030.0266
ILE 1040.0304
GLY 1050.0339
GLY 1060.0317
GLY 1070.0260
SER 1080.0190
LYS 1090.0174
LEU 1100.0130
LEU 1110.0135
ASP 1120.0143
ILE 1130.0137
ASN 1140.0154
LEU 1150.0147
GLY 1160.0181
ARG 1170.0192
GLY 1180.0198
GLY 1190.0185
GLY 1200.0171
SER 1210.0150
MET 1220.0116
VAL 1230.0105
ASP 1240.0080
LEU 1250.0080
THR 1260.0086
PHE 1270.0106
GLY 1280.0130
GLY 1290.0139
VAL 1300.0164
GLY 1310.0172
GLY 1320.0146
GLY 1330.0113
SER 1340.0099
THR 1350.0067
PHE 1360.0076
THR 1370.0070
PHE 1380.0055
PHE 1390.0055
PRO 1400.0050
LEU 1410.0076
VAL 1420.0089
ILE 1430.0100
GLY 1440.0126
GLY 1450.0124
GLY 1460.0120
SER 1470.0120
ASP 1480.0117
ALA 1490.0110
MET 1500.0096
TYR 1510.0088
LEU 1520.0082
GLY 1530.0080
PHE 1540.0079
ALA 1550.0080
ALA 1560.0071
GLY 1570.0045
GLY 1580.0050
GLY 1590.0056
SER 1600.0081
ALA 1610.0106
GLY 1620.0122
GLY 1630.0110
GLU 1640.0094
ASN 1650.0062
HIS 1660.0046
VAL 1670.0045
ALA 1680.0064
PHE 1690.0098
GLY 1700.0120
PRO 1710.0168
GLY 1720.0171
PRO 1730.0189
GLY 1740.0148
VAL 1750.0106
ASP 1760.0072
LEU 1770.0051
THR 1780.0053
PHE 1790.0071
GLY 1800.0107
GLY 1810.0120
VAL 1820.0119
GLN 1830.0102
PHE 1840.0105
ALA 1850.0131
MET 1860.0154
VAL 1870.0229
ASN 1880.0284
ASN 1890.0355
GLY 1900.0408
PRO 1910.0461
GLY 1920.0455
PRO 1930.0309
GLY 1940.0164
GLU 1950.0177
SER 1960.0242
PHE 1970.0201
THR 1980.0262
ALA 1990.0203
GLN 2000.0262
PRO 2010.0159
ALA 2020.0163
ASP 2030.0252
MET 2040.0254
GLN 2050.0306
ALA 2060.0467
GLY 2070.0429
ILE 2080.0236
LYS 2090.0326
GLY 2100.0292
PRO 2110.0399
GLY 2120.0784
PRO 2130.0969
GLY 2140.0664
GLY 2150.0329
SER 2160.0343
ILE 2170.0321
GLN 2180.0392
VAL 2190.0334
ILE 2200.0438
ASN 2210.0399
GLY 2220.0348
SER 2230.0436
THR 2240.0426
ILE 2250.0427
GLY 2260.0577
THR 2270.0623
GLY 2280.0546
SER 2290.0506
LYS 2300.0341
LYS 2310.0275
THR 2320.0158
ILE 2330.0136
LEU 2340.0117
ILE 2350.0111
TYR 2360.0110
SER 2370.0091
ILE 2380.0075
ILE 2390.0083
GLY 2400.0063
VAL 2410.0047
LYS 2420.0043
LYS 2430.0044
GLY 2440.0052
THR 2450.0055
LEU 2460.0090
ALA 2470.0112
TRP 2480.0143
ALA 2490.0159
ARG 2500.0188
THR 2510.0202
GLY 2520.0166
PHE 2530.0071
SER 2540.0073
PRO 2550.0084
ALA 2560.0243
LYS 2570.0349
LYS 2580.0365
LEU 2590.0380
ASN 2600.0437
ALA 2610.0229
GLY 2620.0175
VAL 2630.0092
VAL 2640.0072
ARG 2650.0093
VAL 2660.0095
PHE 2670.0101
PHE 2680.0098
LEU 2690.0110
ASN 2700.0121
GLN 2710.0083
LYS 2720.0091
LYS 2730.0117
ALA 2740.0102
LYS 2750.0091
ASP 2760.0139
VAL 2770.0175
LEU 2780.0144
ARG 2790.0208
LYS 2800.0260
THR 2810.0374
SER 2820.0439
ARG 2830.0459
PRO 2840.0539
MET 2850.0522
VAL 2860.0496
ASP 2870.0332
LEU 2880.0296
THR 2890.0215
PHE 2900.0286
GLY 2910.0596
GLY 2920.0700

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.