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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 27  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0847
GLU 270.0144
PRO 280.0148
CYS 290.0134
VAL 300.0147
GLU 310.0147
VAL 320.0145
VAL 330.0138
PRO 340.0142
ASN 350.0123
ILE 360.0109
THR 370.0112
TYR 380.0115
GLN 390.0119
CYS 400.0110
MET 410.0110
GLU 420.0112
LEU 430.0117
ASN 440.0104
PHE 450.0093
TYR 460.0079
LYS 470.0075
ILE 480.0076
PRO 490.0097
ASP 500.0104
ASN 510.0123
LEU 520.0115
PRO 530.0113
PHE 540.0095
SER 550.0090
THR 560.0088
LYS 570.0076
ASN 580.0083
LEU 590.0081
ASP 600.0088
LEU 610.0080
SER 620.0083
PHE 630.0088
ASN 640.0081
PRO 650.0069
LEU 660.0056
ARG 670.0042
HIS 680.0033
LEU 690.0032
GLY 700.0034
SER 710.0035
TYR 720.0045
SER 730.0049
PHE 740.0052
PHE 750.0060
SER 760.0075
PHE 770.0064
PRO 780.0053
GLU 790.0054
LEU 800.0052
GLN 810.0051
VAL 820.0059
LEU 830.0054
ASP 840.0064
LEU 850.0056
SER 860.0067
ARG 870.0068
CYS 880.0058
GLU 890.0051
ILE 900.0037
GLN 910.0027
THR 920.0018
ILE 930.0016
GLU 940.0016
ASP 950.0019
GLY 960.0021
ALA 970.0022
TYR 980.0022
GLN 990.0024
SER 1000.0034
LEU 1010.0027
SER 1020.0014
HIS 1030.0022
LEU 1040.0028
SER 1050.0037
THR 1060.0047
LEU 1070.0042
ILE 1080.0050
LEU 1090.0046
THR 1100.0057
GLY 1110.0057
ASN 1120.0048
PRO 1130.0045
ILE 1140.0034
GLN 1150.0029
SER 1160.0020
LEU 1170.0019
ALA 1180.0017
LEU 1190.0024
GLY 1200.0017
ALA 1210.0012
PHE 1220.0018
SER 1230.0017
GLY 1240.0014
LEU 1250.0017
SER 1260.0018
SER 1270.0026
LEU 1280.0032
GLN 1290.0040
LYS 1300.0045
LEU 1310.0044
VAL 1320.0049
ALA 1330.0048
VAL 1340.0053
GLU 1350.0054
THR 1360.0048
ASN 1370.0047
LEU 1380.0046
ALA 1390.0047
SER 1400.0045
LEU 1410.0043
GLU 1420.0041
ASN 1430.0038
PHE 1440.0038
PRO 1450.0035
ILE 1460.0036
GLY 1470.0036
HIS 1480.0033
LEU 1490.0033
LYS 1500.0038
THR 1510.0038
LEU 1520.0042
LYS 1530.0046
GLU 1540.0047
LEU 1550.0046
ASN 1560.0048
VAL 1570.0047
ALA 1580.0048
HIS 1590.0048
ASN 1600.0047
LEU 1610.0047
ILE 1620.0045
GLN 1630.0046
SER 1640.0044
PHE 1650.0043
LYS 1660.0043
LEU 1670.0041
PRO 1680.0041
GLU 1690.0041
TYR 1700.0041
PHE 1710.0041
SER 1720.0044
ASN 1730.0042
LEU 1740.0042
THR 1750.0045
ASN 1760.0044
LEU 1770.0045
GLU 1780.0045
HIS 1790.0045
LEU 1800.0045
ASP 1810.0045
LEU 1820.0044
SER 1830.0043
SER 1840.0042
ASN 1850.0043
LYS 1860.0042
ILE 1870.0042
GLN 1880.0041
SER 1890.0040
ILE 1900.0039
TYR 1910.0040
CYS 1920.0039
THR 1930.0040
ASP 1940.0040
LEU 1950.0038
ARG 1960.0039
VAL 1970.0040
LEU 1980.0039
HIS 1990.0038
GLN 2000.0040
MET 2010.0041
PRO 2020.0043
LEU 2030.0044
LEU 2040.0043
ASN 2050.0044
LEU 2060.0043
SER 2070.0043
LEU 2080.0043
ASP 2090.0042
LEU 2100.0041
SER 2110.0040
LEU 2120.0039
ASN 2130.0040
PRO 2140.0039
MET 2150.0037
ASN 2160.0036
PHE 2170.0037
ILE 2180.0035
GLN 2190.0036
PRO 2200.0034
GLY 2210.0034
ALA 2220.0035
PHE 2230.0034
LYS 2240.0033
GLU 2250.0034
ILE 2260.0035
ARG 2270.0037
LEU 2280.0038
HIS 2290.0039
LYS 2300.0038
LEU 2310.0037
THR 2320.0039
LEU 2330.0036
ARG 2340.0036
ASN 2350.0035
ASN 2360.0034
PHE 2370.0031
ASP 2380.0029
SER 2390.0024
LEU 2400.0020
ASN 2410.0019
VAL 2420.0027
MET 2430.0026
LYS 2440.0023
THR 2450.0026
CYS 2460.0029
ILE 2470.0027
GLN 2480.0027
GLY 2490.0031
LEU 2500.0030
ALA 2510.0028
GLY 2520.0030
LEU 2530.0031
GLU 2540.0032
VAL 2550.0033
HIS 2560.0033
ARG 2570.0033
LEU 2580.0031
VAL 2590.0034
LEU 2600.0032
GLY 2610.0034
GLU 2620.0036
PHE 2630.0040
ARG 2640.0041
ASN 2650.0041
GLU 2660.0036
GLY 2670.0037
ASN 2680.0033
LEU 2690.0027
GLU 2700.0024
LYS 2710.0022
PHE 2720.0023
ASP 2730.0019
LYS 2740.0016
SER 2750.0012
ALA 2760.0017
LEU 2770.0019
GLU 2780.0015
GLY 2790.0019
LEU 2800.0020
CYS 2810.0017
ASN 2820.0022
LEU 2830.0024
THR 2840.0024
ILE 2850.0025
GLU 2860.0025
GLU 2870.0027
PHE 2880.0027
ARG 2890.0032
LEU 2900.0032
ALA 2910.0039
TYR 2920.0052
LEU 2930.0044
ASP 2940.0046
TYR 2950.0040
TYR 2960.0045
LEU 2970.0038
ASP 2980.0039
GLY 2990.0033
ILE 3000.0026
ILE 3010.0022
ASP 3020.0017
LEU 3030.0019
PHE 3040.0018
ASN 3050.0013
CYS 3060.0012
LEU 3070.0015
THR 3080.0011
ASN 3090.0011
VAL 3100.0016
SER 3110.0017
SER 3120.0023
PHE 3130.0024
SER 3140.0030
LEU 3150.0034
VAL 3160.0041
SER 3170.0048
VAL 3180.0044
THR 3190.0046
ILE 3200.0042
GLU 3210.0046
ARG 3220.0040
VAL 3230.0036
LYS 3240.0034
ASP 3250.0029
PHE 3260.0025
SER 3270.0024
TYR 3280.0019
ASN 3290.0015
PHE 3300.0012
GLY 3310.0009
TRP 3320.0014
GLN 3330.0013
HIS 3340.0019
LEU 3350.0023
GLU 3360.0028
LEU 3370.0036
VAL 3380.0043
ASN 3390.0049
CYS 3400.0047
LYS 3410.0051
PHE 3420.0048
GLY 3430.0052
GLN 3440.0047
PHE 3450.0041
PRO 3460.0036
THR 3470.0032
LEU 3480.0026
LYS 3490.0022
LEU 3500.0016
LYS 3510.0012
SER 3520.0010
LEU 3530.0013
LYS 3540.0011
ARG 3550.0017
LEU 3560.0022
THR 3570.0027
PHE 3580.0033
THR 3590.0038
SER 3600.0046
ASN 3610.0047
LYS 3620.0052
GLY 3630.0054
GLY 3640.0052
ASN 3650.0045
ALA 3660.0043
PHE 3670.0033
SER 3680.0034
GLU 3690.0029
VAL 3700.0025
ASP 3710.0022
LEU 3720.0017
PRO 3730.0013
SER 3740.0009
LEU 3750.0011
GLU 3760.0009
PHE 3770.0013
LEU 3780.0018
ASP 3790.0024
LEU 3800.0028
SER 3810.0031
ARG 3820.0039
ASN 3830.0042
GLY 3840.0040
LEU 3850.0037
SER 3860.0036
PHE 3870.0023
LYS 3880.0024
GLY 3890.0021
CYS 3900.0014
CYS 3910.0013
SER 3920.0014
GLN 3930.0016
SER 3940.0023
ASP 3950.0021
PHE 3960.0019
GLY 3970.0018
THR 3980.0013
ILE 3990.0011
SER 4000.0006
LEU 4010.0006
LYS 4020.0004
TYR 4030.0008
LEU 4040.0011
ASP 4050.0016
LEU 4060.0018
SER 4070.0023
PHE 4080.0028
ASN 4090.0026
GLY 4100.0022
VAL 4110.0015
ILE 4120.0009
THR 4130.0009
MET 4140.0010
SER 4150.0016
SER 4160.0016
ASN 4170.0013
PHE 4180.0011
LEU 4190.0017
GLY 4200.0016
LEU 4210.0009
GLU 4220.0012
GLN 4230.0008
LEU 4240.0005
GLU 4250.0008
HIS 4260.0008
LEU 4270.0004
ASP 4280.0009
PHE 4290.0008
GLN 4300.0017
HIS 4310.0018
SER 4320.0011
ASN 4330.0007
LEU 4340.0006
LYS 4350.0007
GLN 4360.0013
MET 4370.0015
SER 4380.0021
GLU 4390.0021
PHE 4400.0022
SER 4410.0022
VAL 4420.0014
PHE 4430.0014
LEU 4440.0019
SER 4450.0017
LEU 4460.0014
ARG 4470.0018
ASN 4480.0015
LEU 4490.0014
ILE 4500.0016
TYR 4510.0015
LEU 4520.0015
ASP 4530.0018
ILE 4540.0020
SER 4550.0025
HIS 4560.0027
THR 4570.0022
HIS 4580.0026
THR 4590.0025
ARG 4600.0030
VAL 4610.0031
ALA 4620.0031
PHE 4630.0029
ASN 4640.0031
GLY 4650.0028
ILE 4660.0024
PHE 4670.0024
ASN 4680.0025
GLY 4690.0023
LEU 4700.0022
SER 4710.0024
SER 4720.0022
LEU 4730.0023
GLU 4740.0023
VAL 4750.0024
LEU 4760.0025
LYS 4770.0027
MET 4780.0031
ALA 4790.0035
GLY 4800.0039
ASN 4810.0039
SER 4820.0039
PHE 4830.0039
GLN 4840.0041
GLU 4850.0044
ASN 4860.0042
PHE 4870.0037
LEU 4880.0034
PRO 4890.0034
ASP 4900.0031
ILE 4910.0031
PHE 4920.0027
THR 4930.0028
GLU 4940.0026
LEU 4950.0025
ARG 4960.0025
ASN 4970.0025
LEU 4980.0026
THR 4990.0026
PHE 5000.0028
LEU 5010.0029
ASP 5020.0032
LEU 5030.0036
SER 5040.0039
GLN 5050.0046
CYS 5060.0046
GLN 5070.0043
LEU 5080.0038
GLU 5090.0036
GLN 5100.0033
LEU 5110.0030
SER 5120.0028
PRO 5130.0023
THR 5140.0024
ALA 5150.0027
PHE 5160.0024
ASN 5170.0021
SER 5180.0023
LEU 5190.0023
SER 5200.0021
SER 5210.0024
LEU 5220.0025
GLN 5230.0027
VAL 5240.0030
LEU 5250.0030
ASN 5260.0034
MET 5270.0033
SER 5280.0040
HIS 5290.0045
ASN 5300.0041
ASN 5310.0037
PHE 5320.0026
PHE 5330.0018
SER 5340.0013
LEU 5350.0015
ASP 5360.0010
THR 5370.0012
PHE 5380.0010
PRO 5390.0014
TYR 5400.0015
LYS 5410.0010
CYS 5420.0013
LEU 5430.0017
ASN 5440.0016
SER 5450.0022
LEU 5460.0024
GLN 5470.0030
VAL 5480.0034
LEU 5490.0030
ASP 5500.0036
TYR 5510.0032
SER 5520.0043
LEU 5530.0046
ASN 5540.0036
HIS 5550.0029
ILE 5560.0022
MET 5570.0023
THR 5580.0020
SER 5590.0018
LYS 5600.0018
LYS 5610.0021
GLN 5620.0029
GLU 5630.0021
LEU 5640.0024
GLN 5650.0028
HIS 5660.0017
PHE 5670.0017
PRO 5680.0017
SER 5690.0022
SER 5700.0025
LEU 5710.0028
ALA 5720.0040
PHE 5730.0043
LEU 5740.0038
ASN 5750.0045
LEU 5760.0041
THR 5770.0054
GLN 5780.0054
ASN 5790.0041
ASP 5800.0037
PHE 5810.0037
ALA 5820.0038
CYS 5830.0052
THR 5840.0053
CYS 5850.0061
GLU 5860.0049
HIS 5870.0042
GLN 5880.0055
SER 5890.0050
PHE 5900.0038
LEU 5910.0051
GLN 5920.0058
TRP 5930.0048
ILE 5940.0050
LYS 5950.0064
ASP 5960.0060
GLN 5970.0053
ARG 5980.0061
GLN 5990.0061
LEU 6000.0049
LEU 6010.0053
VAL 6020.0063
GLU 6030.0073
VAL 6040.0071
GLU 6050.0081
ARG 6060.0074
MET 6070.0062
GLU 6080.0065
CYS 6090.0057
ALA 6100.0051
THR 6110.0043
PRO 6120.0054
SER 6130.0062
ASP 6140.0075
LYS 6150.0073
GLN 6160.0068
GLY 6170.0077
MET 6180.0079
PRO 6190.0077
VAL 6200.0066
LEU 6210.0074
SER 6220.0088
LEU 6230.0080
ASN 6240.0087
ILE 6250.0081
THR 6260.0090
CYS 6270.0091
GLU 10.0028
ALA 20.0022
ALA 30.0015
ALA 40.0017
LYS 50.0015
MET 60.0009
GLN 70.0007
ARG 80.0011
LEU 90.0005
VAL 100.0007
LEU 110.0011
LEU 120.0009
LEU 130.0009
ALA 140.0014
ILE 150.0015
SER 160.0013
LEU 170.0014
LEU 180.0014
LEU 190.0012
TYR 200.0012
GLN 210.0012
ASP 220.0010
LEU 230.0007
PRO 240.0007
VAL 250.0010
ARG 260.0012
SER 270.0011
GLU 280.0016
PHE 290.0020
GLU 300.0016
LEU 310.0016
ASP 320.0023
ARG 330.0024
ILE 340.0024
CYS 350.0030
GLY 360.0030
TYR 370.0026
GLY 380.0024
THR 390.0029
ALA 400.0031
ARG 410.0035
CYS 420.0040
ARG 430.0046
LYS 440.0053
LYS 450.0057
CYS 460.0056
ARG 470.0054
SER 480.0056
GLN 490.0049
GLU 500.0049
TYR 510.0054
ARG 520.0057
ILE 530.0054
GLY 540.0057
ARG 550.0056
CYS 560.0046
PRO 570.0044
ASN 580.0045
THR 590.0055
TYR 600.0053
ALA 610.0053
CYS 620.0046
CYS 630.0046
LEU 640.0043
ARG 650.0043
LYS 660.0046
TRP 670.0044
ASP 680.0045
GLU 690.0046
SER 700.0044
LEU 710.0042
LEU 720.0044
ASN 730.0043
ARG 740.0038
THR 750.0037
LYS 760.0033
PRO 770.0038
GLU 780.0018
ALA 790.0053
ALA 800.0083
ALA 810.0185
LYS 820.0212
LYS 830.0168
GLU 840.0152
MET 850.0131
ASN 860.0092
LEU 870.0070
SER 880.0077
VAL 890.0109
GLY 900.0161
LEU 910.0226
GLY 920.0295
GLY 930.0374
GLY 940.0342
SER 950.0304
ASN 960.0217
LEU 970.0200
SER 980.0167
VAL 990.0177
GLY 1000.0196
LEU 1010.0227
GLY 1020.0315
GLU 1030.0372
ILE 1040.0475
GLY 1050.0555
GLY 1060.0610
GLY 1070.0521
SER 1080.0423
LYS 1090.0331
LEU 1100.0252
LEU 1110.0192
ASP 1120.0203
ILE 1130.0158
ASN 1140.0217
LEU 1150.0196
GLY 1160.0277
ARG 1170.0295
GLY 1180.0314
GLY 1190.0282
GLY 1200.0268
SER 1210.0215
MET 1220.0176
VAL 1230.0112
ASP 1240.0093
LEU 1250.0032
THR 1260.0044
PHE 1270.0077
GLY 1280.0086
GLY 1290.0135
VAL 1300.0170
GLY 1310.0151
GLY 1320.0154
GLY 1330.0158
SER 1340.0164
THR 1350.0169
PHE 1360.0184
THR 1370.0206
PHE 1380.0168
PHE 1390.0186
PRO 1400.0152
LEU 1410.0137
VAL 1420.0119
ILE 1430.0088
GLY 1440.0073
GLY 1450.0042
GLY 1460.0067
SER 1470.0105
ASP 1480.0102
ALA 1490.0106
MET 1500.0068
TYR 1510.0112
LEU 1520.0120
GLY 1530.0169
PHE 1540.0184
ALA 1550.0234
ALA 1560.0195
GLY 1570.0183
GLY 1580.0156
GLY 1590.0149
SER 1600.0133
ALA 1610.0204
GLY 1620.0183
GLY 1630.0161
GLU 1640.0135
ASN 1650.0135
HIS 1660.0116
VAL 1670.0111
ALA 1680.0136
PHE 1690.0134
GLY 1700.0202
PRO 1710.0247
GLY 1720.0269
PRO 1730.0242
GLY 1740.0241
VAL 1750.0189
ASP 1760.0207
LEU 1770.0198
THR 1780.0213
PHE 1790.0232
GLY 1800.0253
GLY 1810.0280
VAL 1820.0322
GLN 1830.0304
PHE 1840.0308
ALA 1850.0321
MET 1860.0290
VAL 1870.0350
ASN 1880.0317
ASN 1890.0360
GLY 1900.0323
PRO 1910.0302
GLY 1920.0258
PRO 1930.0227
GLY 1940.0130
GLU 1950.0093
SER 1960.0180
PHE 1970.0177
THR 1980.0252
ALA 1990.0312
GLN 2000.0294
PRO 2010.0335
ALA 2020.0178
ASP 2030.0133
MET 2040.0257
GLN 2050.0199
ALA 2060.0348
GLY 2070.0335
ILE 2080.0378
LYS 2090.0449
GLY 2100.0400
PRO 2110.0388
GLY 2120.0354
PRO 2130.0343
GLY 2140.0320
GLY 2150.0353
SER 2160.0373
ILE 2170.0249
GLN 2180.0264
VAL 2190.0173
ILE 2200.0130
ASN 2210.0094
GLY 2220.0090
SER 2230.0116
THR 2240.0111
ILE 2250.0113
GLY 2260.0157
THR 2270.0146
GLY 2280.0134
SER 2290.0103
LYS 2300.0108
LYS 2310.0083
THR 2320.0086
ILE 2330.0067
LEU 2340.0068
ILE 2350.0073
TYR 2360.0063
SER 2370.0064
ILE 2380.0070
ILE 2390.0061
GLY 2400.0069
VAL 2410.0070
LYS 2420.0061
LYS 2430.0066
GLY 2440.0071
THR 2450.0066
LEU 2460.0072
ALA 2470.0060
TRP 2480.0063
ALA 2490.0068
ARG 2500.0080
THR 2510.0088
GLY 2520.0112
PHE 2530.0122
SER 2540.0154
PRO 2550.0157
ALA 2560.0184
LYS 2570.0197
LYS 2580.0184
LEU 2590.0198
ASN 2600.0202
ALA 2610.0198
GLY 2620.0170
VAL 2630.0182
VAL 2640.0143
ARG 2650.0141
VAL 2660.0149
PHE 2670.0126
PHE 2680.0163
LEU 2690.0134
ASN 2700.0131
GLN 2710.0058
LYS 2720.0088
LYS 2730.0130
ALA 2740.0114
LYS 2750.0114
ASP 2760.0195
VAL 2770.0250
LEU 2780.0255
ARG 2790.0320
LYS 2800.0362
THR 2810.0514
SER 2820.0581
ARG 2830.0595
PRO 2840.0679
MET 2850.0657
VAL 2860.0590
ASP 2870.0315
LEU 2880.0294
THR 2890.0095
PHE 2900.0189
GLY 2910.0670
GLY 2920.0847

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.