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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 28  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0709
GLU 270.0128
PRO 280.0117
CYS 290.0109
VAL 300.0122
GLU 310.0138
VAL 320.0139
VAL 330.0149
PRO 340.0158
ASN 350.0146
ILE 360.0131
THR 370.0118
TYR 380.0108
GLN 390.0096
CYS 400.0082
MET 410.0068
GLU 420.0058
LEU 430.0069
ASN 440.0062
PHE 450.0068
TYR 460.0069
LYS 470.0072
ILE 480.0073
PRO 490.0091
ASP 500.0107
ASN 510.0124
LEU 520.0119
PRO 530.0129
PHE 540.0119
SER 550.0121
THR 560.0109
LYS 570.0101
ASN 580.0093
LEU 590.0079
ASP 600.0070
LEU 610.0056
SER 620.0047
PHE 630.0039
ASN 640.0042
PRO 650.0042
LEU 660.0046
ARG 670.0044
HIS 680.0049
LEU 690.0046
GLY 700.0057
SER 710.0059
TYR 720.0062
SER 730.0060
PHE 740.0064
PHE 750.0077
SER 760.0089
PHE 770.0083
PRO 780.0083
GLU 790.0090
LEU 800.0077
GLN 810.0078
VAL 820.0068
LEU 830.0053
ASP 840.0050
LEU 850.0036
SER 860.0038
ARG 870.0031
CYS 880.0030
GLU 890.0033
ILE 900.0034
GLN 910.0045
THR 920.0045
ILE 930.0038
GLU 940.0046
ASP 950.0045
GLY 960.0044
ALA 970.0042
TYR 980.0041
GLN 990.0046
SER 1000.0057
LEU 1010.0054
SER 1020.0054
HIS 1030.0063
LEU 1040.0051
SER 1050.0057
THR 1060.0051
LEU 1070.0041
ILE 1080.0042
LEU 1090.0036
THR 1100.0044
GLY 1110.0043
ASN 1120.0034
PRO 1130.0043
ILE 1140.0042
GLN 1150.0053
SER 1160.0051
LEU 1170.0039
ALA 1180.0041
LEU 1190.0037
GLY 1200.0034
ALA 1210.0031
PHE 1220.0031
SER 1230.0032
GLY 1240.0036
LEU 1250.0038
SER 1260.0042
SER 1270.0048
LEU 1280.0043
GLN 1290.0046
LYS 1300.0045
LEU 1310.0044
VAL 1320.0045
ALA 1330.0044
VAL 1340.0050
GLU 1350.0052
THR 1360.0047
ASN 1370.0052
LEU 1380.0048
ALA 1390.0049
SER 1400.0045
LEU 1410.0041
GLU 1420.0040
ASN 1430.0041
PHE 1440.0039
PRO 1450.0037
ILE 1460.0035
GLY 1470.0035
HIS 1480.0032
LEU 1490.0034
LYS 1500.0037
THR 1510.0040
LEU 1520.0038
LYS 1530.0039
GLU 1540.0041
LEU 1550.0043
ASN 1560.0047
VAL 1570.0045
ALA 1580.0051
HIS 1590.0056
ASN 1600.0054
LEU 1610.0056
ILE 1620.0048
GLN 1630.0047
SER 1640.0043
PHE 1650.0038
LYS 1660.0037
LEU 1670.0036
PRO 1680.0037
GLU 1690.0035
TYR 1700.0035
PHE 1710.0034
SER 1720.0034
ASN 1730.0033
LEU 1740.0034
THR 1750.0035
ASN 1760.0036
LEU 1770.0033
GLU 1780.0032
HIS 1790.0036
LEU 1800.0038
ASP 1810.0043
LEU 1820.0044
SER 1830.0048
SER 1840.0053
ASN 1850.0051
LYS 1860.0052
ILE 1870.0044
GLN 1880.0042
SER 1890.0036
ILE 1900.0032
TYR 1910.0030
CYS 1920.0027
THR 1930.0031
ASP 1940.0033
LEU 1950.0028
ARG 1960.0028
VAL 1970.0031
LEU 1980.0028
HIS 1990.0026
GLN 2000.0027
MET 2010.0026
PRO 2020.0022
LEU 2030.0022
LEU 2040.0027
ASN 2050.0027
LEU 2060.0030
SER 2070.0033
LEU 2080.0035
ASP 2090.0039
LEU 2100.0039
SER 2110.0042
LEU 2120.0046
ASN 2130.0044
PRO 2140.0044
MET 2150.0038
ASN 2160.0037
PHE 2170.0030
ILE 2180.0026
GLN 2190.0025
PRO 2200.0019
GLY 2210.0017
ALA 2220.0021
PHE 2230.0017
LYS 2240.0011
GLU 2250.0009
ILE 2260.0015
ARG 2270.0014
LEU 2280.0021
HIS 2290.0025
LYS 2300.0028
LEU 2310.0028
THR 2320.0033
LEU 2330.0032
ARG 2340.0036
ASN 2350.0038
ASN 2360.0036
PHE 2370.0033
ASP 2380.0036
SER 2390.0030
LEU 2400.0023
ASN 2410.0024
VAL 2420.0028
MET 2430.0024
LYS 2440.0019
THR 2450.0022
CYS 2460.0023
ILE 2470.0017
GLN 2480.0014
GLY 2490.0018
LEU 2500.0016
ALA 2510.0010
GLY 2520.0006
LEU 2530.0011
GLU 2540.0014
VAL 2550.0021
HIS 2560.0027
ARG 2570.0030
LEU 2580.0025
VAL 2590.0029
LEU 2600.0025
GLY 2610.0029
GLU 2620.0035
PHE 2630.0042
ARG 2640.0043
ASN 2650.0049
GLU 2660.0046
GLY 2670.0041
ASN 2680.0035
LEU 2690.0029
GLU 2700.0029
LYS 2710.0023
PHE 2720.0017
ASP 2730.0015
LYS 2740.0015
SER 2750.0015
ALA 2760.0015
LEU 2770.0015
GLU 2780.0013
GLY 2790.0013
LEU 2800.0015
CYS 2810.0016
ASN 2820.0012
LEU 2830.0013
THR 2840.0020
ILE 2850.0024
GLU 2860.0032
GLU 2870.0034
PHE 2880.0029
ARG 2890.0029
LEU 2900.0026
ALA 2910.0031
TYR 2920.0031
LEU 2930.0026
ASP 2940.0029
TYR 2950.0024
TYR 2960.0022
LEU 2970.0017
ASP 2980.0015
GLY 2990.0018
ILE 3000.0021
ILE 3010.0023
ASP 3020.0022
LEU 3030.0019
PHE 3040.0023
ASN 3050.0026
CYS 3060.0025
LEU 3070.0029
THR 3080.0033
ASN 3090.0039
VAL 3100.0037
SER 3110.0042
SER 3120.0041
PHE 3130.0034
SER 3140.0033
LEU 3150.0028
VAL 3160.0030
SER 3170.0030
VAL 3180.0025
THR 3190.0021
ILE 3200.0019
GLU 3210.0017
ARG 3220.0019
VAL 3230.0022
LYS 3240.0026
ASP 3250.0028
PHE 3260.0030
SER 3270.0033
TYR 3280.0036
ASN 3290.0040
PHE 3300.0039
GLY 3310.0044
TRP 3320.0045
GLN 3330.0050
HIS 3340.0045
LEU 3350.0037
GLU 3360.0034
LEU 3370.0030
VAL 3380.0031
ASN 3390.0029
CYS 3400.0024
LYS 3410.0022
PHE 3420.0019
GLY 3430.0017
GLN 3440.0019
PHE 3450.0022
PRO 3460.0026
THR 3470.0030
LEU 3480.0035
LYS 3490.0040
LEU 3500.0044
LYS 3510.0050
SER 3520.0058
LEU 3530.0050
LYS 3540.0053
ARG 3550.0047
LEU 3560.0037
THR 3570.0034
PHE 3580.0030
THR 3590.0030
SER 3600.0028
ASN 3610.0025
LYS 3620.0020
GLY 3630.0018
GLY 3640.0017
ASN 3650.0018
ALA 3660.0018
PHE 3670.0020
SER 3680.0026
GLU 3690.0029
VAL 3700.0033
ASP 3710.0039
LEU 3720.0043
PRO 3730.0050
SER 3740.0053
LEU 3750.0045
GLU 3760.0046
PHE 3770.0040
LEU 3780.0034
ASP 3790.0032
LEU 3800.0026
SER 3810.0025
ARG 3820.0025
ASN 3830.0023
GLY 3840.0017
LEU 3850.0017
SER 3860.0014
PHE 3870.0013
LYS 3880.0017
GLY 3890.0018
CYS 3900.0013
CYS 3910.0013
SER 3920.0019
GLN 3930.0026
SER 3940.0032
ASP 3950.0027
PHE 3960.0031
GLY 3970.0036
THR 3980.0037
ILE 3990.0036
SER 4000.0038
LEU 4010.0030
LYS 4020.0035
TYR 4030.0033
LEU 4040.0026
ASP 4050.0025
LEU 4060.0019
SER 4070.0019
PHE 4080.0022
ASN 4090.0016
GLY 4100.0011
VAL 4110.0009
ILE 4120.0010
THR 4130.0014
MET 4140.0014
SER 4150.0019
SER 4160.0017
ASN 4170.0015
PHE 4180.0013
LEU 4190.0018
GLY 4200.0021
LEU 4210.0017
GLU 4220.0017
GLN 4230.0020
LEU 4240.0020
GLU 4250.0023
HIS 4260.0024
LEU 4270.0015
ASP 4280.0018
PHE 4290.0016
GLN 4300.0022
HIS 4310.0023
SER 4320.0015
ASN 4330.0015
LEU 4340.0015
LYS 4350.0017
GLN 4360.0021
MET 4370.0019
SER 4380.0024
GLU 4390.0024
PHE 4400.0023
SER 4410.0020
VAL 4420.0017
PHE 4430.0014
LEU 4440.0017
SER 4450.0013
LEU 4460.0011
ARG 4470.0013
ASN 4480.0012
LEU 4490.0014
ILE 4500.0019
TYR 4510.0020
LEU 4520.0018
ASP 4530.0021
ILE 4540.0021
SER 4550.0026
HIS 4560.0027
THR 4570.0024
HIS 4580.0025
THR 4590.0024
ARG 4600.0025
VAL 4610.0025
ALA 4620.0026
PHE 4630.0026
ASN 4640.0027
GLY 4650.0025
ILE 4660.0023
PHE 4670.0023
ASN 4680.0025
GLY 4690.0022
LEU 4700.0021
SER 4710.0024
SER 4720.0022
LEU 4730.0023
GLU 4740.0025
VAL 4750.0025
LEU 4760.0025
LYS 4770.0025
MET 4780.0027
ALA 4790.0030
GLY 4800.0031
ASN 4810.0030
SER 4820.0026
PHE 4830.0026
GLN 4840.0026
GLU 4850.0026
ASN 4860.0026
PHE 4870.0024
LEU 4880.0025
PRO 4890.0027
ASP 4900.0028
ILE 4910.0029
PHE 4920.0030
THR 4930.0032
GLU 4940.0031
LEU 4950.0030
ARG 4960.0032
ASN 4970.0031
LEU 4980.0031
THR 4990.0031
PHE 5000.0030
LEU 5010.0029
ASP 5020.0029
LEU 5030.0029
SER 5040.0029
GLN 5050.0031
CYS 5060.0031
GLN 5070.0025
LEU 5080.0024
GLU 5090.0021
GLN 5100.0021
LEU 5110.0022
SER 5120.0024
PRO 5130.0023
THR 5140.0026
ALA 5150.0027
PHE 5160.0029
ASN 5170.0031
SER 5180.0034
LEU 5190.0034
SER 5200.0036
SER 5210.0037
LEU 5220.0035
GLN 5230.0035
VAL 5240.0033
LEU 5250.0030
ASN 5260.0029
MET 5270.0026
SER 5280.0026
HIS 5290.0026
ASN 5300.0023
ASN 5310.0017
PHE 5320.0010
PHE 5330.0004
SER 5340.0004
LEU 5350.0007
ASP 5360.0006
THR 5370.0013
PHE 5380.0015
PRO 5390.0021
TYR 5400.0024
LYS 5410.0024
CYS 5420.0030
LEU 5430.0032
ASN 5440.0036
SER 5450.0038
LEU 5460.0034
GLN 5470.0038
VAL 5480.0036
LEU 5490.0030
ASP 5500.0030
TYR 5510.0023
SER 5520.0028
LEU 5530.0023
ASN 5540.0014
HIS 5550.0007
ILE 5560.0009
MET 5570.0020
THR 5580.0021
SER 5590.0014
LYS 5600.0019
LYS 5610.0015
GLN 5620.0015
GLU 5630.0003
LEU 5640.0012
GLN 5650.0014
HIS 5660.0015
PHE 5670.0021
PRO 5680.0027
SER 5690.0031
SER 5700.0036
LEU 5710.0034
ALA 5720.0042
PHE 5730.0042
LEU 5740.0033
ASN 5750.0035
LEU 5760.0029
THR 5770.0037
GLN 5780.0032
ASN 5790.0022
ASP 5800.0023
PHE 5810.0030
ALA 5820.0039
CYS 5830.0052
THR 5840.0059
CYS 5850.0064
GLU 5860.0056
HIS 5870.0043
GLN 5880.0050
SER 5890.0040
PHE 5900.0031
LEU 5910.0043
GLN 5920.0046
TRP 5930.0036
ILE 5940.0040
LYS 5950.0052
ASP 5960.0047
GLN 5970.0043
ARG 5980.0050
GLN 5990.0053
LEU 6000.0045
LEU 6010.0044
VAL 6020.0054
GLU 6030.0058
VAL 6040.0057
GLU 6050.0063
ARG 6060.0053
MET 6070.0046
GLU 6080.0048
CYS 6090.0047
ALA 6100.0040
THR 6110.0043
PRO 6120.0059
SER 6130.0061
ASP 6140.0074
LYS 6150.0067
GLN 6160.0057
GLY 6170.0059
MET 6180.0066
PRO 6190.0063
VAL 6200.0054
LEU 6210.0062
SER 6220.0075
LEU 6230.0070
ASN 6240.0079
ILE 6250.0072
THR 6260.0083
CYS 6270.0087
GLU 10.0709
ALA 20.0320
ALA 30.0302
ALA 40.0499
LYS 50.0345
MET 60.0383
GLN 70.0458
ARG 80.0222
LEU 90.0378
VAL 100.0635
LEU 110.0393
LEU 120.0128
LEU 130.0572
ALA 140.0629
ILE 150.0249
SER 160.0328
LEU 170.0529
LEU 180.0417
LEU 190.0143
TYR 200.0370
GLN 210.0436
ASP 220.0284
LEU 230.0150
PRO 240.0217
VAL 250.0403
ARG 260.0185
SER 270.0139
GLU 280.0146
PHE 290.0114
GLU 300.0077
LEU 310.0074
ASP 320.0085
ARG 330.0076
ILE 340.0064
CYS 350.0070
GLY 360.0054
TYR 370.0043
GLY 380.0048
THR 390.0052
ALA 400.0064
ARG 410.0066
CYS 420.0078
ARG 430.0079
LYS 440.0090
LYS 450.0087
CYS 460.0074
ARG 470.0062
SER 480.0070
GLN 490.0064
GLU 500.0068
TYR 510.0086
ARG 520.0094
ILE 530.0098
GLY 540.0105
ARG 550.0108
CYS 560.0100
PRO 570.0108
ASN 580.0114
THR 590.0121
TYR 600.0109
ALA 610.0096
CYS 620.0086
CYS 630.0075
LEU 640.0069
ARG 650.0061
LYS 660.0062
TRP 670.0062
ASP 680.0058
GLU 690.0066
SER 700.0060
LEU 710.0056
LEU 720.0063
ASN 730.0064
ARG 740.0059
THR 750.0063
LYS 760.0061
PRO 770.0059
GLU 780.0062
ALA 790.0063
ALA 800.0059
ALA 810.0053
LYS 820.0066
LYS 830.0051
GLU 840.0046
MET 850.0041
ASN 860.0044
LEU 870.0046
SER 880.0060
VAL 890.0071
GLY 900.0092
LEU 910.0117
GLY 920.0143
GLY 930.0184
GLY 940.0175
SER 950.0158
ASN 960.0119
LEU 970.0109
SER 980.0089
VAL 990.0085
GLY 1000.0080
LEU 1010.0089
GLY 1020.0121
GLU 1030.0142
ILE 1040.0189
GLY 1050.0222
GLY 1060.0238
GLY 1070.0206
SER 1080.0171
LYS 1090.0135
LEU 1100.0107
LEU 1110.0094
ASP 1120.0106
ILE 1130.0092
ASN 1140.0119
LEU 1150.0111
GLY 1160.0135
ARG 1170.0142
GLY 1180.0141
GLY 1190.0124
GLY 1200.0112
SER 1210.0096
MET 1220.0075
VAL 1230.0062
ASP 1240.0053
LEU 1250.0041
THR 1260.0042
PHE 1270.0043
GLY 1280.0042
GLY 1290.0052
VAL 1300.0058
GLY 1310.0044
GLY 1320.0050
GLY 1330.0052
SER 1340.0066
THR 1350.0074
PHE 1360.0091
THR 1370.0104
PHE 1380.0094
PHE 1390.0106
PRO 1400.0097
LEU 1410.0101
VAL 1420.0100
ILE 1430.0088
GLY 1440.0094
GLY 1450.0075
GLY 1460.0088
SER 1470.0099
ASP 1480.0087
ALA 1490.0093
MET 1500.0075
TYR 1510.0087
LEU 1520.0084
GLY 1530.0101
PHE 1540.0102
ALA 1550.0120
ALA 1560.0098
GLY 1570.0086
GLY 1580.0064
GLY 1590.0063
SER 1600.0054
ALA 1610.0073
GLY 1620.0065
GLY 1630.0061
GLU 1640.0055
ASN 1650.0057
HIS 1660.0053
VAL 1670.0049
ALA 1680.0049
PHE 1690.0043
GLY 1700.0055
PRO 1710.0068
GLY 1720.0063
PRO 1730.0062
GLY 1740.0078
VAL 1750.0067
ASP 1760.0077
LEU 1770.0083
THR 1780.0086
PHE 1790.0095
GLY 1800.0102
GLY 1810.0121
VAL 1820.0141
GLN 1830.0132
PHE 1840.0140
ALA 1850.0144
MET 1860.0143
VAL 1870.0183
ASN 1880.0173
ASN 1890.0240
GLY 1900.0232
PRO 1910.0210
GLY 1920.0219
PRO 1930.0152
GLY 1940.0040
GLU 1950.0027
SER 1960.0189
PHE 1970.0105
THR 1980.0225
ALA 1990.0190
GLN 2000.0168
PRO 2010.0188
ALA 2020.0068
ASP 2030.0098
MET 2040.0222
GLN 2050.0254
ALA 2060.0365
GLY 2070.0230
ILE 2080.0178
LYS 2090.0120
GLY 2100.0095
PRO 2110.0121
GLY 2120.0300
PRO 2130.0344
GLY 2140.0182
GLY 2150.0107
SER 2160.0221
ILE 2170.0205
GLN 2180.0198
VAL 2190.0165
ILE 2200.0179
ASN 2210.0158
GLY 2220.0131
SER 2230.0153
THR 2240.0148
ILE 2250.0148
GLY 2260.0190
THR 2270.0206
GLY 2280.0197
SER 2290.0189
LYS 2300.0150
LYS 2310.0116
THR 2320.0081
ILE 2330.0053
LEU 2340.0031
ILE 2350.0029
TYR 2360.0027
SER 2370.0027
ILE 2380.0023
ILE 2390.0019
GLY 2400.0019
VAL 2410.0012
LYS 2420.0012
LYS 2430.0014
GLY 2440.0011
THR 2450.0008
LEU 2460.0012
ALA 2470.0013
TRP 2480.0013
ALA 2490.0018
ARG 2500.0021
THR 2510.0033
GLY 2520.0027
PHE 2530.0038
SER 2540.0065
PRO 2550.0095
ALA 2560.0136
LYS 2570.0175
LYS 2580.0155
LEU 2590.0143
ASN 2600.0137
ALA 2610.0058
GLY 2620.0048
VAL 2630.0055
VAL 2640.0034
ARG 2650.0044
VAL 2660.0060
PHE 2670.0038
PHE 2680.0039
LEU 2690.0023
ASN 2700.0038
GLN 2710.0030
LYS 2720.0047
LYS 2730.0072
ALA 2740.0070
LYS 2750.0076
ASP 2760.0126
VAL 2770.0158
LEU 2780.0171
ARG 2790.0211
LYS 2800.0235
THR 2810.0329
SER 2820.0363
ARG 2830.0354
PRO 2840.0392
MET 2850.0363
VAL 2860.0325
ASP 2870.0189
LEU 2880.0152
THR 2890.0049
PHE 2900.0073
GLY 2910.0318
GLY 2920.0442

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.