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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 29  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0667
GLU 270.0089
PRO 280.0086
CYS 290.0081
VAL 300.0096
GLU 310.0103
VAL 320.0103
VAL 330.0104
PRO 340.0110
ASN 350.0099
ILE 360.0085
THR 370.0079
TYR 380.0076
GLN 390.0074
CYS 400.0062
MET 410.0061
GLU 420.0059
LEU 430.0057
ASN 440.0042
PHE 450.0034
TYR 460.0019
LYS 470.0025
ILE 480.0033
PRO 490.0052
ASP 500.0065
ASN 510.0081
LEU 520.0079
PRO 530.0087
PHE 540.0079
SER 550.0078
THR 560.0067
LYS 570.0057
ASN 580.0055
LEU 590.0048
ASP 600.0049
LEU 610.0038
SER 620.0043
PHE 630.0046
ASN 640.0033
PRO 650.0022
LEU 660.0009
ARG 670.0017
HIS 680.0016
LEU 690.0015
GLY 700.0028
SER 710.0037
TYR 720.0040
SER 730.0029
PHE 740.0033
PHE 750.0048
SER 760.0055
PHE 770.0050
PRO 780.0051
GLU 790.0051
LEU 800.0038
GLN 810.0032
VAL 820.0033
LEU 830.0025
ASP 840.0032
LEU 850.0024
SER 860.0038
ARG 870.0040
CYS 880.0028
GLU 890.0032
ILE 900.0025
GLN 910.0035
THR 920.0032
ILE 930.0026
GLU 940.0034
ASP 950.0041
GLY 960.0035
ALA 970.0024
TYR 980.0019
GLN 990.0033
SER 1000.0037
LEU 1010.0026
SER 1020.0026
HIS 1030.0022
LEU 1040.0012
SER 1050.0013
THR 1060.0021
LEU 1070.0018
ILE 1080.0027
LEU 1090.0029
THR 1100.0040
GLY 1110.0044
ASN 1120.0037
PRO 1130.0045
ILE 1140.0041
GLN 1150.0049
SER 1160.0046
LEU 1170.0040
ALA 1180.0044
LEU 1190.0045
GLY 1200.0038
ALA 1210.0029
PHE 1220.0024
SER 1230.0030
GLY 1240.0026
LEU 1250.0014
SER 1260.0018
SER 1270.0007
LEU 1280.0011
GLN 1290.0016
LYS 1300.0023
LEU 1310.0026
VAL 1320.0032
ALA 1330.0036
VAL 1340.0042
GLU 1350.0046
THR 1360.0043
ASN 1370.0048
LEU 1380.0045
ALA 1390.0048
SER 1400.0045
LEU 1410.0040
GLU 1420.0044
ASN 1430.0043
PHE 1440.0038
PRO 1450.0036
ILE 1460.0032
GLY 1470.0033
HIS 1480.0028
LEU 1490.0023
LYS 1500.0022
THR 1510.0017
LEU 1520.0023
LYS 1530.0024
GLU 1540.0028
LEU 1550.0031
ASN 1560.0035
VAL 1570.0038
ALA 1580.0040
HIS 1590.0044
ASN 1600.0044
LEU 1610.0047
ILE 1620.0042
GLN 1630.0044
SER 1640.0041
PHE 1650.0037
LYS 1660.0037
LEU 1670.0036
PRO 1680.0037
GLU 1690.0036
TYR 1700.0034
PHE 1710.0031
SER 1720.0031
ASN 1730.0029
LEU 1740.0027
THR 1750.0025
ASN 1760.0022
LEU 1770.0027
GLU 1780.0026
HIS 1790.0029
LEU 1800.0031
ASP 1810.0034
LEU 1820.0036
SER 1830.0037
SER 1840.0040
ASN 1850.0041
LYS 1860.0043
ILE 1870.0038
GLN 1880.0037
SER 1890.0035
ILE 1900.0033
TYR 1910.0032
CYS 1920.0032
THR 1930.0033
ASP 1940.0033
LEU 1950.0030
ARG 1960.0030
VAL 1970.0030
LEU 1980.0028
HIS 1990.0027
GLN 2000.0027
MET 2010.0026
PRO 2020.0025
LEU 2030.0022
LEU 2040.0024
ASN 2050.0024
LEU 2060.0026
SER 2070.0028
LEU 2080.0029
ASP 2090.0031
LEU 2100.0032
SER 2110.0033
LEU 2120.0036
ASN 2130.0036
PRO 2140.0036
MET 2150.0033
ASN 2160.0033
PHE 2170.0031
ILE 2180.0028
GLN 2190.0028
PRO 2200.0025
GLY 2210.0023
ALA 2220.0026
PHE 2230.0024
LYS 2240.0022
GLU 2250.0021
ILE 2260.0023
ARG 2270.0021
LEU 2280.0023
HIS 2290.0023
LYS 2300.0025
LEU 2310.0026
THR 2320.0027
LEU 2330.0027
ARG 2340.0030
ASN 2350.0031
ASN 2360.0030
PHE 2370.0029
ASP 2380.0030
SER 2390.0026
LEU 2400.0024
ASN 2410.0021
VAL 2420.0026
MET 2430.0026
LYS 2440.0022
THR 2450.0022
CYS 2460.0024
ILE 2470.0023
GLN 2480.0020
GLY 2490.0023
LEU 2500.0022
ALA 2510.0019
GLY 2520.0018
LEU 2530.0020
GLU 2540.0019
VAL 2550.0021
HIS 2560.0021
ARG 2570.0023
LEU 2580.0022
VAL 2590.0025
LEU 2600.0024
GLY 2610.0026
GLU 2620.0027
PHE 2630.0032
ARG 2640.0035
ASN 2650.0038
GLU 2660.0034
GLY 2670.0032
ASN 2680.0029
LEU 2690.0026
GLU 2700.0027
LYS 2710.0024
PHE 2720.0024
ASP 2730.0022
LYS 2740.0020
SER 2750.0017
ALA 2760.0020
LEU 2770.0020
GLU 2780.0016
GLY 2790.0015
LEU 2800.0017
CYS 2810.0013
ASN 2820.0013
LEU 2830.0016
THR 2840.0015
ILE 2850.0019
GLU 2860.0020
GLU 2870.0023
PHE 2880.0023
ARG 2890.0026
LEU 2900.0026
ALA 2910.0030
TYR 2920.0027
LEU 2930.0026
ASP 2940.0026
TYR 2950.0024
TYR 2960.0025
LEU 2970.0032
ASP 2980.0033
GLY 2990.0032
ILE 3000.0029
ILE 3010.0028
ASP 3020.0023
LEU 3030.0023
PHE 3040.0023
ASN 3050.0021
CYS 3060.0017
LEU 3070.0020
THR 3080.0020
ASN 3090.0018
VAL 3100.0020
SER 3110.0022
SER 3120.0025
PHE 3130.0026
SER 3140.0030
LEU 3150.0032
VAL 3160.0035
SER 3170.0038
VAL 3180.0036
THR 3190.0038
ILE 3200.0037
GLU 3210.0040
ARG 3220.0042
VAL 3230.0040
LYS 3240.0040
ASP 3250.0036
PHE 3260.0035
SER 3270.0034
TYR 3280.0030
ASN 3290.0028
PHE 3300.0025
GLY 3310.0023
TRP 3320.0025
GLN 3330.0024
HIS 3340.0027
LEU 3350.0030
GLU 3360.0033
LEU 3370.0037
VAL 3380.0040
ASN 3390.0044
CYS 3400.0043
LYS 3410.0046
PHE 3420.0047
GLY 3430.0050
GLN 3440.0049
PHE 3450.0047
PRO 3460.0042
THR 3470.0040
LEU 3480.0036
LYS 3490.0033
LEU 3500.0030
LYS 3510.0027
SER 3520.0026
LEU 3530.0027
LYS 3540.0027
ARG 3550.0030
LEU 3560.0034
THR 3570.0037
PHE 3580.0041
THR 3590.0045
SER 3600.0050
ASN 3610.0051
LYS 3620.0052
GLY 3630.0054
GLY 3640.0053
ASN 3650.0051
ALA 3660.0051
PHE 3670.0047
SER 3680.0045
GLU 3690.0040
VAL 3700.0037
ASP 3710.0033
LEU 3720.0033
PRO 3730.0029
SER 3740.0027
LEU 3750.0029
GLU 3760.0028
PHE 3770.0033
LEU 3780.0036
ASP 3790.0041
LEU 3800.0044
SER 3810.0048
ARG 3820.0053
ASN 3830.0054
GLY 3840.0056
LEU 3850.0051
SER 3860.0049
PHE 3870.0041
LYS 3880.0039
GLY 3890.0033
CYS 3900.0032
CYS 3910.0029
SER 3920.0028
GLN 3930.0028
SER 3940.0032
ASP 3950.0035
PHE 3960.0034
GLY 3970.0034
THR 3980.0030
ILE 3990.0026
SER 4000.0026
LEU 4010.0030
LYS 4020.0029
TYR 4030.0035
LEU 4040.0037
ASP 4050.0043
LEU 4060.0044
SER 4070.0047
PHE 4080.0052
ASN 4090.0051
GLY 4100.0050
VAL 4110.0044
ILE 4120.0037
THR 4130.0032
MET 4140.0025
SER 4150.0024
SER 4160.0021
ASN 4170.0017
PHE 4180.0021
LEU 4190.0019
GLY 4200.0021
LEU 4210.0023
GLU 4220.0020
GLN 4230.0026
LEU 4240.0029
GLU 4250.0034
HIS 4260.0038
LEU 4270.0036
ASP 4280.0041
PHE 4290.0040
GLN 4300.0044
HIS 4310.0047
SER 4320.0042
ASN 4330.0038
LEU 4340.0030
LYS 4350.0026
GLN 4360.0019
MET 4370.0013
SER 4380.0005
GLU 4390.0011
PHE 4400.0005
SER 4410.0004
VAL 4420.0012
PHE 4430.0015
LEU 4440.0009
SER 4450.0011
LEU 4460.0019
ARG 4470.0021
ASN 4480.0031
LEU 4490.0033
ILE 4500.0043
TYR 4510.0044
LEU 4520.0038
ASP 4530.0040
ILE 4540.0034
SER 4550.0037
HIS 4560.0037
THR 4570.0032
HIS 4580.0026
THR 4590.0017
ARG 4600.0008
VAL 4610.0005
ALA 4620.0008
PHE 4630.0010
ASN 4640.0018
GLY 4650.0016
ILE 4660.0012
PHE 4670.0019
ASN 4680.0020
GLY 4690.0022
LEU 4700.0031
SER 4710.0040
SER 4720.0048
LEU 4730.0045
GLU 4740.0057
VAL 4750.0054
LEU 4760.0042
LYS 4770.0042
MET 4780.0033
ALA 4790.0034
GLY 4800.0030
ASN 4810.0022
SER 4820.0007
PHE 4830.0006
GLN 4840.0016
GLU 4850.0025
ASN 4860.0016
PHE 4870.0022
LEU 4880.0022
PRO 4890.0031
ASP 4900.0040
ILE 4910.0033
PHE 4920.0039
THR 4930.0050
GLU 4940.0048
LEU 4950.0050
ARG 4960.0064
ASN 4970.0070
LEU 4980.0062
THR 4990.0072
PHE 5000.0064
LEU 5010.0049
ASP 5020.0041
LEU 5030.0029
SER 5040.0029
GLN 5050.0025
CYS 5060.0017
GLN 5070.0013
LEU 5080.0008
GLU 5090.0021
GLN 5100.0030
LEU 5110.0035
SER 5120.0048
PRO 5130.0059
THR 5140.0064
ALA 5150.0050
PHE 5160.0058
ASN 5170.0073
SER 5180.0078
LEU 5190.0074
SER 5200.0090
SER 5210.0091
LEU 5220.0080
GLN 5230.0086
VAL 5240.0072
LEU 5250.0054
ASN 5260.0043
MET 5270.0025
SER 5280.0028
HIS 5290.0029
ASN 5300.0015
ASN 5310.0023
PHE 5320.0028
PHE 5330.0046
SER 5340.0042
LEU 5350.0032
ASP 5360.0053
THR 5370.0058
PHE 5380.0077
PRO 5390.0068
TYR 5400.0071
LYS 5410.0092
CYS 5420.0098
LEU 5430.0091
ASN 5440.0109
SER 5450.0106
LEU 5460.0087
GLN 5470.0093
VAL 5480.0076
LEU 5490.0054
ASP 5500.0044
TYR 5510.0022
SER 5520.0036
LEU 5530.0045
ASN 5540.0031
HIS 5550.0045
ILE 5560.0034
MET 5570.0056
THR 5580.0058
SER 5590.0057
LYS 5600.0080
LYS 5610.0088
GLN 5620.0088
GLU 5630.0087
LEU 5640.0065
GLN 5650.0083
HIS 5660.0092
PHE 5670.0079
PRO 5680.0098
SER 5690.0111
SER 5700.0112
LEU 5710.0089
ALA 5720.0092
PHE 5730.0076
LEU 5740.0051
ASN 5750.0047
LEU 5760.0026
THR 5770.0051
GLN 5780.0064
ASN 5790.0049
ASP 5800.0067
PHE 5810.0060
ALA 5820.0089
CYS 5830.0089
THR 5840.0111
CYS 5850.0115
GLU 5860.0122
HIS 5870.0089
GLN 5880.0082
SER 5890.0078
PHE 5900.0054
LEU 5910.0043
GLN 5920.0043
TRP 5930.0042
ILE 5940.0013
LYS 5950.0013
ASP 5960.0042
GLN 5970.0049
ARG 5980.0042
GLN 5990.0070
LEU 6000.0067
LEU 6010.0050
VAL 6020.0072
GLU 6030.0078
VAL 6040.0058
GLU 6050.0080
ARG 6060.0082
MET 6070.0059
GLU 6080.0078
CYS 6090.0086
ALA 6100.0103
THR 6110.0118
PRO 6120.0138
SER 6130.0158
ASP 6140.0159
LYS 6150.0127
GLN 6160.0129
GLY 6170.0121
MET 6180.0102
PRO 6190.0076
VAL 6200.0051
LEU 6210.0035
SER 6220.0059
LEU 6230.0067
ASN 6240.0076
ILE 6250.0073
THR 6260.0099
CYS 6270.0138
GLU 10.0545
ALA 20.0226
ALA 30.0259
ALA 40.0390
LYS 50.0274
MET 60.0302
GLN 70.0343
ARG 80.0165
LEU 90.0322
VAL 100.0482
LEU 110.0267
LEU 120.0146
LEU 130.0454
ALA 140.0454
ILE 150.0146
SER 160.0258
LEU 170.0388
LEU 180.0282
LEU 190.0089
TYR 200.0272
GLN 210.0300
ASP 220.0181
LEU 230.0074
PRO 240.0114
VAL 250.0257
ARG 260.0074
SER 270.0054
GLU 280.0044
PHE 290.0031
GLU 300.0033
LEU 310.0028
ASP 320.0032
ARG 330.0030
ILE 340.0031
CYS 350.0036
GLY 360.0038
TYR 370.0035
GLY 380.0028
THR 390.0029
ALA 400.0032
ARG 410.0033
CYS 420.0041
ARG 430.0045
LYS 440.0053
LYS 450.0052
CYS 460.0043
ARG 470.0039
SER 480.0038
GLN 490.0031
GLU 500.0034
TYR 510.0041
ARG 520.0049
ILE 530.0049
GLY 540.0057
ARG 550.0060
CYS 560.0051
PRO 570.0053
ASN 580.0056
THR 590.0064
TYR 600.0057
ALA 610.0052
CYS 620.0045
CYS 630.0041
LEU 640.0036
ARG 650.0031
LYS 660.0032
TRP 670.0033
ASP 680.0033
GLU 690.0035
SER 700.0035
LEU 710.0037
LEU 720.0040
ASN 730.0041
ARG 740.0039
THR 750.0039
LYS 760.0047
PRO 770.0047
GLU 780.0045
ALA 790.0050
ALA 800.0055
ALA 810.0129
LYS 820.0156
LYS 830.0124
GLU 840.0127
MET 850.0112
ASN 860.0099
LEU 870.0085
SER 880.0074
VAL 890.0081
GLY 900.0093
LEU 910.0129
GLY 920.0160
GLY 930.0212
GLY 940.0199
SER 950.0186
ASN 960.0144
LEU 970.0145
SER 980.0136
VAL 990.0149
GLY 1000.0164
LEU 1010.0185
GLY 1020.0244
GLU 1030.0277
ILE 1040.0350
GLY 1050.0400
GLY 1060.0423
GLY 1070.0363
SER 1080.0297
LYS 1090.0239
LEU 1100.0184
LEU 1110.0156
ASP 1120.0159
ILE 1130.0126
ASN 1140.0151
LEU 1150.0127
GLY 1160.0160
ARG 1170.0163
GLY 1180.0168
GLY 1190.0145
GLY 1200.0132
SER 1210.0103
MET 1220.0074
VAL 1230.0049
ASP 1240.0034
LEU 1250.0039
THR 1260.0044
PHE 1270.0067
GLY 1280.0065
GLY 1290.0083
VAL 1300.0107
GLY 1310.0094
GLY 1320.0095
GLY 1330.0097
SER 1340.0110
THR 1350.0118
PHE 1360.0142
THR 1370.0156
PHE 1380.0138
PHE 1390.0153
PRO 1400.0138
LEU 1410.0141
VAL 1420.0139
ILE 1430.0108
GLY 1440.0109
GLY 1450.0069
GLY 1460.0055
SER 1470.0075
ASP 1480.0065
ALA 1490.0090
MET 1500.0079
TYR 1510.0111
LEU 1520.0116
GLY 1530.0145
PHE 1540.0153
ALA 1550.0183
ALA 1560.0149
GLY 1570.0121
GLY 1580.0079
GLY 1590.0080
SER 1600.0067
ALA 1610.0113
GLY 1620.0096
GLY 1630.0082
GLU 1640.0073
ASN 1650.0079
HIS 1660.0060
VAL 1670.0062
ALA 1680.0055
PHE 1690.0045
GLY 1700.0077
PRO 1710.0097
GLY 1720.0115
PRO 1730.0110
GLY 1740.0131
VAL 1750.0105
ASP 1760.0116
LEU 1770.0121
THR 1780.0116
PHE 1790.0132
GLY 1800.0129
GLY 1810.0147
VAL 1820.0191
GLN 1830.0186
PHE 1840.0207
ALA 1850.0221
MET 1860.0224
VAL 1870.0282
ASN 1880.0256
ASN 1890.0347
GLY 1900.0323
PRO 1910.0281
GLY 1920.0370
PRO 1930.0334
GLY 1940.0190
GLU 1950.0111
SER 1960.0274
PHE 1970.0170
THR 1980.0306
ALA 1990.0235
GLN 2000.0242
PRO 2010.0210
ALA 2020.0124
ASP 2030.0175
MET 2040.0265
GLN 2050.0322
ALA 2060.0487
GLY 2070.0360
ILE 2080.0214
LYS 2090.0082
GLY 2100.0111
PRO 2110.0178
GLY 2120.0550
PRO 2130.0667
GLY 2140.0366
GLY 2150.0093
SER 2160.0274
ILE 2170.0270
GLN 2180.0277
VAL 2190.0254
ILE 2200.0277
ASN 2210.0238
GLY 2220.0183
SER 2230.0168
THR 2240.0175
ILE 2250.0137
GLY 2260.0177
THR 2270.0175
GLY 2280.0163
SER 2290.0141
LYS 2300.0118
LYS 2310.0093
THR 2320.0071
ILE 2330.0063
LEU 2340.0063
ILE 2350.0064
TYR 2360.0063
SER 2370.0059
ILE 2380.0054
ILE 2390.0053
GLY 2400.0056
VAL 2410.0057
LYS 2420.0055
LYS 2430.0055
GLY 2440.0055
THR 2450.0057
LEU 2460.0069
ALA 2470.0068
TRP 2480.0060
ALA 2490.0059
ARG 2500.0054
THR 2510.0063
GLY 2520.0070
PHE 2530.0059
SER 2540.0084
PRO 2550.0098
ALA 2560.0121
LYS 2570.0153
LYS 2580.0118
LEU 2590.0121
ASN 2600.0119
ALA 2610.0115
GLY 2620.0081
VAL 2630.0096
VAL 2640.0077
ARG 2650.0061
VAL 2660.0094
PHE 2670.0062
PHE 2680.0072
LEU 2690.0050
ASN 2700.0082
GLN 2710.0059
LYS 2720.0074
LYS 2730.0094
ALA 2740.0087
LYS 2750.0083
ASP 2760.0140
VAL 2770.0181
LEU 2780.0188
ARG 2790.0233
LYS 2800.0270
THR 2810.0394
SER 2820.0441
ARG 2830.0432
PRO 2840.0485
MET 2850.0444
VAL 2860.0410
ASP 2870.0234
LEU 2880.0193
THR 2890.0053
PHE 2900.0087
GLY 2910.0437
GLY 2920.0613

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.