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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 32  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0362
GLU 270.0088
PRO 280.0111
CYS 290.0129
VAL 300.0198
GLU 310.0230
VAL 320.0270
VAL 330.0300
PRO 340.0297
ASN 350.0280
ILE 360.0264
THR 370.0223
TYR 380.0172
GLN 390.0165
CYS 400.0109
MET 410.0152
GLU 420.0184
LEU 430.0157
ASN 440.0173
PHE 450.0120
TYR 460.0167
LYS 470.0128
ILE 480.0084
PRO 490.0068
ASP 500.0125
ASN 510.0123
LEU 520.0150
PRO 530.0217
PHE 540.0241
SER 550.0262
THR 560.0206
LYS 570.0210
ASN 580.0174
LEU 590.0117
ASP 600.0110
LEU 610.0074
SER 620.0122
PHE 630.0169
ASN 640.0148
PRO 650.0185
LEU 660.0149
ARG 670.0190
HIS 680.0186
LEU 690.0157
GLY 700.0203
SER 710.0221
TYR 720.0202
SER 730.0152
PHE 740.0139
PHE 750.0198
SER 760.0181
PHE 770.0175
PRO 780.0226
GLU 790.0230
LEU 800.0171
GLN 810.0172
VAL 820.0127
LEU 830.0075
ASP 840.0073
LEU 850.0065
SER 860.0115
ARG 870.0156
CYS 880.0140
GLU 890.0189
ILE 900.0163
GLN 910.0207
THR 920.0201
ILE 930.0168
GLU 940.0208
ASP 950.0225
GLY 960.0205
ALA 970.0164
TYR 980.0144
GLN 990.0199
SER 1000.0206
LEU 1010.0173
SER 1020.0202
HIS 1030.0194
LEU 1040.0136
SER 1050.0135
THR 1060.0095
LEU 1070.0049
ILE 1080.0051
LEU 1090.0066
THR 1100.0103
GLY 1110.0143
ASN 1120.0143
PRO 1130.0185
ILE 1140.0168
GLN 1150.0214
SER 1160.0213
LEU 1170.0176
ALA 1180.0202
LEU 1190.0194
GLY 1200.0197
ALA 1210.0157
PHE 1220.0131
SER 1230.0175
GLY 1240.0183
LEU 1250.0145
SER 1260.0180
SER 1270.0152
LEU 1280.0107
GLN 1290.0107
LYS 1300.0075
LEU 1310.0036
VAL 1320.0044
ALA 1330.0054
VAL 1340.0078
GLU 1350.0105
THR 1360.0099
ASN 1370.0115
LEU 1380.0086
ALA 1390.0093
SER 1400.0074
LEU 1410.0055
GLU 1420.0082
ASN 1430.0104
PHE 1440.0085
PRO 1450.0106
ILE 1460.0088
GLY 1470.0107
HIS 1480.0131
LEU 1490.0111
LYS 1500.0128
THR 1510.0127
LEU 1520.0077
LYS 1530.0082
GLU 1540.0060
LEU 1550.0034
ASN 1560.0042
VAL 1570.0042
ALA 1580.0061
HIS 1590.0080
ASN 1600.0073
LEU 1610.0078
ILE 1620.0044
GLN 1630.0044
SER 1640.0028
PHE 1650.0020
LYS 1660.0025
LEU 1670.0034
PRO 1680.0058
GLU 1690.0081
TYR 1700.0088
PHE 1710.0072
SER 1720.0091
ASN 1730.0105
LEU 1740.0085
THR 1750.0106
ASN 1760.0105
LEU 1770.0067
GLU 1780.0074
HIS 1790.0059
LEU 1800.0042
ASP 1810.0045
LEU 1820.0041
SER 1830.0057
SER 1840.0067
ASN 1850.0055
LYS 1860.0055
ILE 1870.0036
GLN 1880.0039
SER 1890.0036
ILE 1900.0038
TYR 1910.0041
CYS 1920.0047
THR 1930.0042
ASP 1940.0033
LEU 1950.0048
ARG 1960.0060
VAL 1970.0059
LEU 1980.0063
HIS 1990.0076
GLN 2000.0087
MET 2010.0089
PRO 2020.0091
LEU 2030.0092
LEU 2040.0073
ASN 2050.0072
LEU 2060.0057
SER 2070.0057
LEU 2080.0052
ASP 2090.0053
LEU 2100.0052
SER 2110.0062
LEU 2120.0063
ASN 2130.0054
PRO 2140.0056
MET 2150.0055
ASN 2160.0057
PHE 2170.0055
ILE 2180.0057
GLN 2190.0061
PRO 2200.0074
GLY 2210.0076
ALA 2220.0062
PHE 2230.0067
LYS 2240.0082
GLU 2250.0085
ILE 2260.0070
ARG 2270.0071
LEU 2280.0061
HIS 2290.0062
LYS 2300.0060
LEU 2310.0058
THR 2320.0058
LEU 2330.0062
ARG 2340.0063
ASN 2350.0067
ASN 2360.0066
PHE 2370.0070
ASP 2380.0076
SER 2390.0084
LEU 2400.0087
ASN 2410.0093
VAL 2420.0080
MET 2430.0076
LYS 2440.0084
THR 2450.0084
CYS 2460.0074
ILE 2470.0076
GLN 2480.0084
GLY 2490.0074
LEU 2500.0071
ALA 2510.0083
GLY 2520.0085
LEU 2530.0074
GLU 2540.0071
VAL 2550.0063
HIS 2560.0060
ARG 2570.0059
LEU 2580.0063
VAL 2590.0062
LEU 2600.0067
GLY 2610.0070
GLU 2620.0065
PHE 2630.0064
ARG 2640.0071
ASN 2650.0068
GLU 2660.0068
GLY 2670.0075
ASN 2680.0076
LEU 2690.0080
GLU 2700.0089
LYS 2710.0089
PHE 2720.0087
ASP 2730.0091
LYS 2740.0087
SER 2750.0091
ALA 2760.0084
LEU 2770.0081
GLU 2780.0088
GLY 2790.0084
LEU 2800.0076
CYS 2810.0082
ASN 2820.0086
LEU 2830.0076
THR 2840.0070
ILE 2850.0063
GLU 2860.0058
GLU 2870.0058
PHE 2880.0061
ARG 2890.0060
LEU 2900.0064
ALA 2910.0062
TYR 2920.0063
LEU 2930.0069
ASP 2940.0077
TYR 2950.0082
TYR 2960.0082
LEU 2970.0072
ASP 2980.0076
GLY 2990.0067
ILE 3000.0060
ILE 3010.0062
ASP 3020.0072
LEU 3030.0071
PHE 3040.0063
ASN 3050.0064
CYS 3060.0067
LEU 3070.0059
THR 3080.0051
ASN 3090.0054
VAL 3100.0056
SER 3110.0051
SER 3120.0050
PHE 3130.0050
SER 3140.0050
LEU 3150.0053
VAL 3160.0054
SER 3170.0060
VAL 3180.0062
THR 3190.0065
ILE 3200.0060
GLU 3210.0064
ARG 3220.0055
VAL 3230.0046
LYS 3240.0040
ASP 3250.0039
PHE 3260.0034
SER 3270.0035
TYR 3280.0035
ASN 3290.0037
PHE 3300.0042
GLY 3310.0049
TRP 3320.0049
GLN 3330.0054
HIS 3340.0049
LEU 3350.0041
GLU 3360.0040
LEU 3370.0039
VAL 3380.0043
ASN 3390.0051
CYS 3400.0052
LYS 3410.0058
PHE 3420.0053
GLY 3430.0060
GLN 3440.0053
PHE 3450.0046
PRO 3460.0037
THR 3470.0042
LEU 3480.0040
LYS 3490.0046
LEU 3500.0048
LYS 3510.0060
SER 3520.0068
LEU 3530.0057
LYS 3540.0064
ARG 3550.0051
LEU 3560.0039
THR 3570.0033
PHE 3580.0033
THR 3590.0036
SER 3600.0043
ASN 3610.0044
LYS 3620.0058
GLY 3630.0059
GLY 3640.0057
ASN 3650.0054
ALA 3660.0060
PHE 3670.0057
SER 3680.0062
GLU 3690.0065
VAL 3700.0058
ASP 3710.0065
LEU 3720.0066
PRO 3730.0083
SER 3740.0081
LEU 3750.0067
GLU 3760.0069
PHE 3770.0056
LEU 3780.0049
ASP 3790.0040
LEU 3800.0041
SER 3810.0039
ARG 3820.0042
ASN 3830.0045
GLY 3840.0055
LEU 3850.0054
SER 3860.0065
PHE 3870.0068
LYS 3880.0080
GLY 3890.0085
CYS 3900.0077
CYS 3910.0076
SER 3920.0087
GLN 3930.0087
SER 3940.0089
ASP 3950.0076
PHE 3960.0071
GLY 3970.0084
THR 3980.0085
ILE 3990.0097
SER 4000.0089
LEU 4010.0075
LYS 4020.0071
TYR 4030.0061
LEU 4040.0059
ASP 4050.0051
LEU 4060.0055
SER 4070.0048
PHE 4080.0049
ASN 4090.0054
GLY 4100.0063
VAL 4110.0069
ILE 4120.0071
THR 4130.0079
MET 4140.0081
SER 4150.0088
SER 4160.0088
ASN 4170.0085
PHE 4180.0083
LEU 4190.0091
GLY 4200.0092
LEU 4210.0083
GLU 4220.0084
GLN 4230.0081
LEU 4240.0074
GLU 4250.0070
HIS 4260.0066
LEU 4270.0066
ASP 4280.0062
PHE 4290.0062
GLN 4300.0057
HIS 4310.0058
SER 4320.0061
ASN 4330.0067
LEU 4340.0069
LYS 4350.0076
GLN 4360.0081
MET 4370.0072
SER 4380.0073
GLU 4390.0078
PHE 4400.0078
SER 4410.0074
VAL 4420.0076
PHE 4430.0074
LEU 4440.0077
SER 4450.0078
LEU 4460.0075
ARG 4470.0071
ASN 4480.0075
LEU 4490.0074
ILE 4500.0076
TYR 4510.0076
LEU 4520.0072
ASP 4530.0069
ILE 4540.0067
SER 4550.0063
HIS 4560.0062
THR 4570.0064
HIS 4580.0060
THR 4590.0059
ARG 4600.0055
VAL 4610.0054
ALA 4620.0055
PHE 4630.0055
ASN 4640.0053
GLY 4650.0058
ILE 4660.0062
PHE 4670.0063
ASN 4680.0061
GLY 4690.0066
LEU 4700.0072
SER 4710.0074
SER 4720.0083
LEU 4730.0082
GLU 4740.0093
VAL 4750.0092
LEU 4760.0079
LYS 4770.0076
MET 4780.0067
ALA 4790.0065
GLY 4800.0062
ASN 4810.0059
SER 4820.0051
PHE 4830.0038
GLN 4840.0032
GLU 4850.0023
ASN 4860.0025
PHE 4870.0022
LEU 4880.0031
PRO 4890.0034
ASP 4900.0048
ILE 4910.0050
PHE 4920.0063
THR 4930.0069
GLU 4940.0070
LEU 4950.0081
ARG 4960.0096
ASN 4970.0108
LEU 4980.0101
THR 4990.0116
PHE 5000.0108
LEU 5010.0089
ASP 5020.0082
LEU 5030.0064
SER 5040.0066
GLN 5050.0065
CYS 5060.0053
GLN 5070.0046
LEU 5080.0029
GLU 5090.0020
GLN 5100.0018
LEU 5110.0031
SER 5120.0051
PRO 5130.0070
THR 5140.0079
ALA 5150.0064
PHE 5160.0083
ASN 5170.0098
SER 5180.0108
LEU 5190.0110
SER 5200.0134
SER 5210.0142
LEU 5220.0130
GLN 5230.0142
VAL 5240.0125
LEU 5250.0098
ASN 5260.0088
MET 5270.0064
SER 5280.0075
HIS 5290.0077
ASN 5300.0053
ASN 5310.0047
PHE 5320.0037
PHE 5330.0059
SER 5340.0044
LEU 5350.0031
ASP 5360.0064
THR 5370.0082
PHE 5380.0105
PRO 5390.0091
TYR 5400.0106
LYS 5410.0137
CYS 5420.0145
LEU 5430.0140
ASN 5440.0170
SER 5450.0170
LEU 5460.0144
GLN 5470.0161
VAL 5480.0137
LEU 5490.0103
ASP 5500.0093
TYR 5510.0061
SER 5520.0086
LEU 5530.0097
ASN 5540.0068
HIS 5550.0074
ILE 5560.0045
MET 5570.0077
THR 5580.0074
SER 5590.0071
LYS 5600.0107
LYS 5610.0119
GLN 5620.0126
GLU 5630.0125
LEU 5640.0096
GLN 5650.0131
HIS 5660.0141
PHE 5670.0126
PRO 5680.0159
SER 5690.0183
SER 5700.0187
LEU 5710.0153
ALA 5720.0166
PHE 5730.0143
LEU 5740.0102
ASN 5750.0099
LEU 5760.0066
THR 5770.0102
GLN 5780.0121
ASN 5790.0090
ASP 5800.0109
PHE 5810.0088
ALA 5820.0135
CYS 5830.0134
THR 5840.0170
CYS 5850.0179
GLU 5860.0189
HIS 5870.0133
GLN 5880.0124
SER 5890.0121
PHE 5900.0078
LEU 5910.0059
GLN 5920.0069
TRP 5930.0071
ILE 5940.0030
LYS 5950.0040
ASP 5960.0086
GLN 5970.0097
ARG 5980.0088
GLN 5990.0135
LEU 6000.0129
LEU 6010.0101
VAL 6020.0139
GLU 6030.0145
VAL 6040.0107
GLU 6050.0137
ARG 6060.0146
MET 6070.0106
GLU 6080.0130
CYS 6090.0135
ALA 6100.0168
THR 6110.0189
PRO 6120.0220
SER 6130.0257
ASP 6140.0255
LYS 6150.0200
GLN 6160.0209
GLY 6170.0197
MET 6180.0160
PRO 6190.0119
VAL 6200.0075
LEU 6210.0049
SER 6220.0080
LEU 6230.0094
ASN 6240.0112
ILE 6250.0114
THR 6260.0162
CYS 6270.0230
GLU 10.0352
ALA 20.0270
ALA 30.0209
ALA 40.0245
LYS 50.0249
MET 60.0149
GLN 70.0155
ARG 80.0236
LEU 90.0212
VAL 100.0170
LEU 110.0221
LEU 120.0253
LEU 130.0242
ALA 140.0240
ILE 150.0276
SER 160.0252
LEU 170.0258
LEU 180.0258
LEU 190.0242
TYR 200.0239
GLN 210.0236
ASP 220.0212
LEU 230.0173
PRO 240.0182
VAL 250.0191
ARG 260.0171
SER 270.0141
GLU 280.0149
PHE 290.0149
GLU 300.0117
LEU 310.0085
ASP 320.0095
ARG 330.0097
ILE 340.0075
CYS 350.0067
GLY 360.0050
TYR 370.0038
GLY 380.0052
THR 390.0066
ALA 400.0078
ARG 410.0084
CYS 420.0095
ARG 430.0108
LYS 440.0123
LYS 450.0126
CYS 460.0113
ARG 470.0105
SER 480.0112
GLN 490.0100
GLU 500.0101
TYR 510.0110
ARG 520.0110
ILE 530.0101
GLY 540.0103
ARG 550.0106
CYS 560.0096
PRO 570.0095
ASN 580.0113
THR 590.0117
TYR 600.0121
ALA 610.0114
CYS 620.0102
CYS 630.0098
LEU 640.0091
ARG 650.0090
LYS 660.0102
TRP 670.0106
ASP 680.0085
GLU 690.0087
SER 700.0074
LEU 710.0086
LEU 720.0100
ASN 730.0093
ARG 740.0082
THR 750.0097
LYS 760.0093
PRO 770.0082
GLU 780.0083
ALA 790.0079
ALA 800.0074
ALA 810.0068
LYS 820.0082
LYS 830.0066
GLU 840.0059
MET 850.0053
ASN 860.0031
LEU 870.0046
SER 880.0065
VAL 890.0096
GLY 900.0123
LEU 910.0172
GLY 920.0211
GLY 930.0259
GLY 940.0232
SER 950.0208
ASN 960.0146
LEU 970.0136
SER 980.0099
VAL 990.0102
GLY 1000.0089
LEU 1010.0114
GLY 1020.0157
GLU 1030.0183
ILE 1040.0237
GLY 1050.0277
GLY 1060.0317
GLY 1070.0267
SER 1080.0205
LYS 1090.0168
LEU 1100.0130
LEU 1110.0112
ASP 1120.0135
ILE 1130.0123
ASN 1140.0166
LEU 1150.0168
GLY 1160.0209
ARG 1170.0237
GLY 1180.0234
GLY 1190.0225
GLY 1200.0203
SER 1210.0173
MET 1220.0136
VAL 1230.0105
ASP 1240.0071
LEU 1250.0036
THR 1260.0012
PHE 1270.0020
GLY 1280.0033
GLY 1290.0063
VAL 1300.0085
GLY 1310.0076
GLY 1320.0084
GLY 1330.0086
SER 1340.0083
THR 1350.0081
PHE 1360.0072
THR 1370.0077
PHE 1380.0063
PHE 1390.0075
PRO 1400.0070
LEU 1410.0092
VAL 1420.0101
ILE 1430.0113
GLY 1440.0134
GLY 1450.0143
GLY 1460.0176
SER 1470.0173
ASP 1480.0151
ALA 1490.0136
MET 1500.0098
TYR 1510.0098
LEU 1520.0082
GLY 1530.0093
PHE 1540.0085
ALA 1550.0101
ALA 1560.0096
GLY 1570.0103
GLY 1580.0107
GLY 1590.0106
SER 1600.0102
ALA 1610.0079
GLY 1620.0080
GLY 1630.0066
GLU 1640.0049
ASN 1650.0028
HIS 1660.0026
VAL 1670.0027
ALA 1680.0062
PHE 1690.0087
GLY 1700.0113
PRO 1710.0189
GLY 1720.0174
PRO 1730.0153
GLY 1740.0100
VAL 1750.0066
ASP 1760.0048
LEU 1770.0016
THR 1780.0041
PHE 1790.0053
GLY 1800.0085
GLY 1810.0098
VAL 1820.0085
GLN 1830.0064
PHE 1840.0035
ALA 1850.0038
MET 1860.0028
VAL 1870.0046
ASN 1880.0097
ASN 1890.0103
GLY 1900.0159
PRO 1910.0163
GLY 1920.0139
PRO 1930.0101
GLY 1940.0053
GLU 1950.0079
SER 1960.0128
PHE 1970.0135
THR 1980.0129
ALA 1990.0131
GLN 2000.0156
PRO 2010.0096
ALA 2020.0085
ASP 2030.0114
MET 2040.0125
GLN 2050.0109
ALA 2060.0185
GLY 2070.0182
ILE 2080.0161
LYS 2090.0200
GLY 2100.0153
PRO 2110.0174
GLY 2120.0283
PRO 2130.0287
GLY 2140.0137
GLY 2150.0123
SER 2160.0182
ILE 2170.0145
GLN 2180.0085
VAL 2190.0050
ILE 2200.0041
ASN 2210.0055
GLY 2220.0053
SER 2230.0102
THR 2240.0105
ILE 2250.0101
GLY 2260.0143
THR 2270.0126
GLY 2280.0066
SER 2290.0050
LYS 2300.0030
LYS 2310.0015
THR 2320.0032
ILE 2330.0026
LEU 2340.0064
ILE 2350.0067
TYR 2360.0077
SER 2370.0082
ILE 2380.0078
ILE 2390.0090
GLY 2400.0089
VAL 2410.0077
LYS 2420.0074
LYS 2430.0074
GLY 2440.0083
THR 2450.0086
LEU 2460.0077
ALA 2470.0093
TRP 2480.0098
ALA 2490.0118
ARG 2500.0125
THR 2510.0133
GLY 2520.0151
PHE 2530.0143
SER 2540.0171
PRO 2550.0158
ALA 2560.0198
LYS 2570.0228
LYS 2580.0225
LEU 2590.0234
ASN 2600.0257
ALA 2610.0227
GLY 2620.0180
VAL 2630.0158
VAL 2640.0115
ARG 2650.0105
VAL 2660.0059
PHE 2670.0053
PHE 2680.0042
LEU 2690.0045
ASN 2700.0029
GLN 2710.0040
LYS 2720.0036
LYS 2730.0038
ALA 2740.0026
LYS 2750.0031
ASP 2760.0100
VAL 2770.0120
LEU 2780.0133
ARG 2790.0177
LYS 2800.0207
THR 2810.0300
SER 2820.0326
ARG 2830.0310
PRO 2840.0336
MET 2850.0301
VAL 2860.0271
ASP 2870.0205
LEU 2880.0166
THR 2890.0152
PHE 2900.0115
GLY 2910.0225
GLY 2920.0362

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.