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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 33  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0518
GLU 270.0158
PRO 280.0153
CYS 290.0133
VAL 300.0138
GLU 310.0148
VAL 320.0136
VAL 330.0149
PRO 340.0167
ASN 350.0159
ILE 360.0138
THR 370.0119
TYR 380.0114
GLN 390.0101
CYS 400.0101
MET 410.0087
GLU 420.0098
LEU 430.0117
ASN 440.0117
PHE 450.0104
TYR 460.0101
LYS 470.0090
ILE 480.0084
PRO 490.0107
ASP 500.0119
ASN 510.0141
LEU 520.0134
PRO 530.0145
PHE 540.0135
SER 550.0139
THR 560.0119
LYS 570.0107
ASN 580.0089
LEU 590.0079
ASP 600.0067
LEU 610.0064
SER 620.0052
PHE 630.0066
ASN 640.0078
PRO 650.0083
LEU 660.0067
ARG 670.0063
HIS 680.0049
LEU 690.0033
GLY 700.0032
SER 710.0029
TYR 720.0046
SER 730.0050
PHE 740.0063
PHE 750.0078
SER 760.0097
PHE 770.0093
PRO 780.0100
GLU 790.0109
LEU 800.0085
GLN 810.0081
VAL 820.0057
LEU 830.0042
ASP 840.0030
LEU 850.0023
SER 860.0020
ARG 870.0039
CYS 880.0045
GLU 890.0056
ILE 900.0041
GLN 910.0051
THR 920.0036
ILE 930.0015
GLU 940.0008
ASP 950.0013
GLY 960.0028
ALA 970.0020
TYR 980.0035
GLN 990.0049
SER 1000.0067
LEU 1010.0066
SER 1020.0082
HIS 1030.0085
LEU 1040.0060
SER 1050.0062
THR 1060.0039
LEU 1070.0029
ILE 1080.0019
LEU 1090.0016
THR 1100.0022
GLY 1110.0031
ASN 1120.0031
PRO 1130.0049
ILE 1140.0042
GLN 1150.0056
SER 1160.0045
LEU 1170.0031
ALA 1180.0032
LEU 1190.0042
GLY 1200.0034
ALA 1210.0023
PHE 1220.0035
SER 1230.0046
GLY 1240.0055
LEU 1250.0053
SER 1260.0071
SER 1270.0070
LEU 1280.0057
GLN 1290.0060
LYS 1300.0051
LEU 1310.0046
VAL 1320.0044
ALA 1330.0043
VAL 1340.0049
GLU 1350.0050
THR 1360.0044
ASN 1370.0043
LEU 1380.0046
ALA 1390.0054
SER 1400.0057
LEU 1410.0057
GLU 1420.0057
ASN 1430.0050
PHE 1440.0049
PRO 1450.0048
ILE 1460.0050
GLY 1470.0059
HIS 1480.0058
LEU 1490.0057
LYS 1500.0065
THR 1510.0063
LEU 1520.0060
LYS 1530.0062
GLU 1540.0061
LEU 1550.0059
ASN 1560.0060
VAL 1570.0055
ALA 1580.0062
HIS 1590.0062
ASN 1600.0056
LEU 1610.0054
ILE 1620.0056
GLN 1630.0056
SER 1640.0057
PHE 1650.0057
LYS 1660.0057
LEU 1670.0061
PRO 1680.0061
GLU 1690.0063
TYR 1700.0061
PHE 1710.0060
SER 1720.0066
ASN 1730.0062
LEU 1740.0061
THR 1750.0064
ASN 1760.0062
LEU 1770.0062
GLU 1780.0066
HIS 1790.0066
LEU 1800.0063
ASP 1810.0065
LEU 1820.0062
SER 1830.0066
SER 1840.0067
ASN 1850.0062
LYS 1860.0058
ILE 1870.0057
GLN 1880.0054
SER 1890.0051
ILE 1900.0050
TYR 1910.0050
CYS 1920.0052
THR 1930.0054
ASP 1940.0054
LEU 1950.0052
ARG 1960.0053
VAL 1970.0056
LEU 1980.0055
HIS 1990.0054
GLN 2000.0054
MET 2010.0055
PRO 2020.0059
LEU 2030.0059
LEU 2040.0060
ASN 2050.0060
LEU 2060.0060
SER 2070.0067
LEU 2080.0063
ASP 2090.0065
LEU 2100.0061
SER 2110.0064
LEU 2120.0064
ASN 2130.0061
PRO 2140.0058
MET 2150.0051
ASN 2160.0047
PHE 2170.0045
ILE 2180.0042
GLN 2190.0042
PRO 2200.0040
GLY 2210.0039
ALA 2220.0042
PHE 2230.0043
LYS 2240.0044
GLU 2250.0047
ILE 2260.0048
ARG 2270.0056
LEU 2280.0058
HIS 2290.0066
LYS 2300.0064
LEU 2310.0059
THR 2320.0059
LEU 2330.0052
ARG 2340.0056
ASN 2350.0057
ASN 2360.0052
PHE 2370.0049
ASP 2380.0056
SER 2390.0047
LEU 2400.0036
ASN 2410.0037
VAL 2420.0041
MET 2430.0035
LYS 2440.0028
THR 2450.0030
CYS 2460.0032
ILE 2470.0033
GLN 2480.0032
GLY 2490.0033
LEU 2500.0035
ALA 2510.0034
GLY 2520.0044
LEU 2530.0046
GLU 2540.0055
VAL 2550.0059
HIS 2560.0069
ARG 2570.0067
LEU 2580.0056
VAL 2590.0056
LEU 2600.0047
GLY 2610.0049
GLU 2620.0051
PHE 2630.0063
ARG 2640.0064
ASN 2650.0078
GLU 2660.0075
GLY 2670.0070
ASN 2680.0056
LEU 2690.0046
GLU 2700.0052
LYS 2710.0041
PHE 2720.0030
ASP 2730.0030
LYS 2740.0026
SER 2750.0026
ALA 2760.0020
LEU 2770.0023
GLU 2780.0026
GLY 2790.0025
LEU 2800.0031
CYS 2810.0038
ASN 2820.0041
LEU 2830.0043
THR 2840.0055
ILE 2850.0057
GLU 2860.0069
GLU 2870.0068
PHE 2880.0056
ARG 2890.0055
LEU 2900.0047
ALA 2910.0058
TYR 2920.0039
LEU 2930.0028
ASP 2940.0042
TYR 2950.0037
TYR 2960.0037
LEU 2970.0031
ASP 2980.0035
GLY 2990.0027
ILE 3000.0022
ILE 3010.0031
ASP 3020.0031
LEU 3030.0021
PHE 3040.0026
ASN 3050.0036
CYS 3060.0038
LEU 3070.0043
THR 3080.0051
ASN 3090.0066
VAL 3100.0065
SER 3110.0077
SER 3120.0071
PHE 3130.0056
SER 3140.0056
LEU 3150.0049
VAL 3160.0060
SER 3170.0057
VAL 3180.0041
THR 3190.0041
ILE 3200.0030
GLU 3210.0038
ARG 3220.0035
VAL 3230.0023
LYS 3240.0027
ASP 3250.0027
PHE 3260.0023
SER 3270.0034
TYR 3280.0042
ASN 3290.0054
PHE 3300.0052
GLY 3310.0068
TRP 3320.0067
GLN 3330.0081
HIS 3340.0076
LEU 3350.0059
GLU 3360.0064
LEU 3370.0050
VAL 3380.0066
ASN 3390.0072
CYS 3400.0055
LYS 3410.0056
PHE 3420.0043
GLY 3430.0050
GLN 3440.0041
PHE 3450.0031
PRO 3460.0020
THR 3470.0019
LEU 3480.0024
LYS 3490.0038
LEU 3500.0051
LYS 3510.0068
SER 3520.0082
LEU 3530.0071
LYS 3540.0085
ARG 3550.0081
LEU 3560.0066
THR 3570.0067
PHE 3580.0058
THR 3590.0073
SER 3600.0082
ASN 3610.0068
LYS 3620.0070
GLY 3630.0063
GLY 3640.0056
ASN 3650.0051
ALA 3660.0047
PHE 3670.0040
SER 3680.0026
GLU 3690.0016
VAL 3700.0021
ASP 3710.0032
LEU 3720.0046
PRO 3730.0062
SER 3740.0077
LEU 3750.0068
GLU 3760.0082
PHE 3770.0074
LEU 3780.0062
ASP 3790.0072
LEU 3800.0063
SER 3810.0080
ARG 3820.0084
ASN 3830.0073
GLY 3840.0079
LEU 3850.0065
SER 3860.0064
PHE 3870.0054
LYS 3880.0051
GLY 3890.0045
CYS 3900.0045
CYS 3910.0041
SER 3920.0023
GLN 3930.0024
SER 3940.0013
ASP 3950.0018
PHE 3960.0029
GLY 3970.0030
THR 3980.0043
ILE 3990.0047
SER 4000.0063
LEU 4010.0060
LYS 4020.0069
TYR 4030.0072
LEU 4040.0064
ASP 4050.0074
LEU 4060.0070
SER 4070.0083
PHE 4080.0089
ASN 4090.0081
GLY 4100.0081
VAL 4110.0079
ILE 4120.0069
THR 4130.0065
MET 4140.0057
SER 4150.0048
SER 4160.0039
ASN 4170.0040
PHE 4180.0036
LEU 4190.0023
GLY 4200.0028
LEU 4210.0041
GLU 4220.0037
GLN 4230.0050
LEU 4240.0055
GLU 4250.0070
HIS 4260.0075
LEU 4270.0070
ASP 4280.0080
PHE 4290.0081
GLN 4300.0093
HIS 4310.0099
SER 4320.0087
ASN 4330.0087
LEU 4340.0079
LYS 4350.0076
GLN 4360.0070
MET 4370.0070
SER 4380.0069
GLU 4390.0064
PHE 4400.0056
SER 4410.0054
VAL 4420.0057
PHE 4430.0056
LEU 4440.0048
SER 4450.0043
LEU 4460.0052
ARG 4470.0050
ASN 4480.0057
LEU 4490.0064
ILE 4500.0073
TYR 4510.0079
LEU 4520.0080
ASP 4530.0088
ILE 4540.0088
SER 4550.0097
HIS 4560.0102
THR 4570.0096
HIS 4580.0096
THR 4590.0089
ARG 4600.0085
VAL 4610.0076
ALA 4620.0071
PHE 4630.0067
ASN 4640.0062
GLY 4650.0061
ILE 4660.0066
PHE 4670.0066
ASN 4680.0060
GLY 4690.0058
LEU 4700.0062
SER 4710.0059
SER 4720.0063
LEU 4730.0069
GLU 4740.0074
VAL 4750.0081
LEU 4760.0081
LYS 4770.0088
MET 4780.0089
ALA 4790.0094
GLY 4800.0100
ASN 4810.0096
SER 4820.0088
PHE 4830.0081
GLN 4840.0083
GLU 4850.0082
ASN 4860.0079
PHE 4870.0072
LEU 4880.0066
PRO 4890.0064
ASP 4900.0058
ILE 4910.0066
PHE 4920.0063
THR 4930.0056
GLU 4940.0059
LEU 4950.0062
ARG 4960.0057
ASN 4970.0063
LEU 4980.0068
THR 4990.0070
PHE 5000.0077
LEU 5010.0076
ASP 5020.0083
LEU 5030.0081
SER 5040.0085
GLN 5050.0094
CYS 5060.0092
GLN 5070.0089
LEU 5080.0078
GLU 5090.0074
GLN 5100.0066
LEU 5110.0057
SER 5120.0055
PRO 5130.0041
THR 5140.0042
ALA 5150.0052
PHE 5160.0046
ASN 5170.0038
SER 5180.0044
LEU 5190.0049
SER 5200.0045
SER 5210.0057
LEU 5220.0061
GLN 5230.0065
VAL 5240.0069
LEU 5250.0064
ASN 5260.0071
MET 5270.0067
SER 5280.0073
HIS 5290.0084
ASN 5300.0083
ASN 5310.0082
PHE 5320.0069
PHE 5330.0065
SER 5340.0049
LEU 5350.0028
ASP 5360.0032
THR 5370.0011
PHE 5380.0019
PRO 5390.0028
TYR 5400.0021
LYS 5410.0012
CYS 5420.0018
LEU 5430.0032
ASN 5440.0039
SER 5450.0054
LEU 5460.0049
GLN 5470.0066
VAL 5480.0064
LEU 5490.0049
ASP 5500.0057
TYR 5510.0047
SER 5520.0055
LEU 5530.0067
ASN 5540.0065
HIS 5550.0064
ILE 5560.0046
MET 5570.0055
THR 5580.0062
SER 5590.0054
LYS 5600.0079
LYS 5610.0072
GLN 5620.0072
GLU 5630.0049
LEU 5640.0044
GLN 5650.0053
HIS 5660.0032
PHE 5670.0024
PRO 5680.0034
SER 5690.0053
SER 5700.0059
LEU 5710.0052
ALA 5720.0080
PHE 5730.0071
LEU 5740.0046
ASN 5750.0049
LEU 5760.0027
THR 5770.0039
GLN 5780.0044
ASN 5790.0038
ASP 5800.0051
PHE 5810.0044
ALA 5820.0082
CYS 5830.0088
THR 5840.0124
CYS 5850.0148
GLU 5860.0146
HIS 5870.0108
GLN 5880.0118
SER 5890.0109
PHE 5900.0074
LEU 5910.0079
GLN 5920.0100
TRP 5930.0081
ILE 5940.0063
LYS 5950.0093
ASP 5960.0104
GLN 5970.0086
ARG 5980.0083
GLN 5990.0101
LEU 6000.0079
LEU 6010.0061
VAL 6020.0078
GLU 6030.0074
VAL 6040.0061
GLU 6050.0057
ARG 6060.0044
MET 6070.0019
GLU 6080.0011
CYS 6090.0043
ALA 6100.0062
THR 6110.0093
PRO 6120.0111
SER 6130.0106
ASP 6140.0106
LYS 6150.0081
GLN 6160.0061
GLY 6170.0025
MET 6180.0041
PRO 6190.0043
VAL 6200.0052
LEU 6210.0077
SER 6220.0093
LEU 6230.0098
ASN 6240.0136
ILE 6250.0146
THR 6260.0182
CYS 6270.0202
GLU 10.0309
ALA 20.0209
ALA 30.0225
ALA 40.0258
LYS 50.0237
MET 60.0205
GLN 70.0207
ARG 80.0216
LEU 90.0240
VAL 100.0229
LEU 110.0189
LEU 120.0215
LEU 130.0248
ALA 140.0213
ILE 150.0195
SER 160.0191
LEU 170.0206
LEU 180.0194
LEU 190.0172
TYR 200.0178
GLN 210.0188
ASP 220.0171
LEU 230.0135
PRO 240.0171
VAL 250.0161
ARG 260.0190
SER 270.0170
GLU 280.0189
PHE 290.0198
GLU 300.0163
LEU 310.0142
ASP 320.0168
ARG 330.0164
ILE 340.0142
CYS 350.0153
GLY 360.0131
TYR 370.0103
GLY 380.0112
THR 390.0134
ALA 400.0155
ARG 410.0156
CYS 420.0185
ARG 430.0192
LYS 440.0220
LYS 450.0212
CYS 460.0180
ARG 470.0150
SER 480.0148
GLN 490.0134
GLU 500.0155
TYR 510.0185
ARG 520.0209
ILE 530.0217
GLY 540.0237
ARG 550.0246
CYS 560.0222
PRO 570.0233
ASN 580.0248
THR 590.0266
TYR 600.0244
ALA 610.0223
CYS 620.0199
CYS 630.0177
LEU 640.0160
ARG 650.0139
LYS 660.0134
TRP 670.0127
ASP 680.0114
GLU 690.0119
SER 700.0102
LEU 710.0098
LEU 720.0113
ASN 730.0107
ARG 740.0093
THR 750.0104
LYS 760.0126
PRO 770.0136
GLU 780.0115
ALA 790.0148
ALA 800.0180
ALA 810.0159
LYS 820.0162
LYS 830.0140
GLU 840.0115
MET 850.0120
ASN 860.0103
LEU 870.0121
SER 880.0106
VAL 890.0137
GLY 900.0132
LEU 910.0177
GLY 920.0190
GLY 930.0208
GLY 940.0171
SER 950.0172
ASN 960.0138
LEU 970.0154
SER 980.0130
VAL 990.0152
GLY 1000.0143
LEU 1010.0186
GLY 1020.0248
GLU 1030.0291
ILE 1040.0384
GLY 1050.0451
GLY 1060.0449
GLY 1070.0374
SER 1080.0272
LYS 1090.0232
LEU 1100.0196
LEU 1110.0195
ASP 1120.0207
ILE 1130.0190
ASN 1140.0211
LEU 1150.0207
GLY 1160.0211
ARG 1170.0245
GLY 1180.0234
GLY 1190.0258
GLY 1200.0252
SER 1210.0210
MET 1220.0177
VAL 1230.0161
ASP 1240.0124
LEU 1250.0133
THR 1260.0110
PHE 1270.0126
GLY 1280.0116
GLY 1290.0128
VAL 1300.0156
GLY 1310.0156
GLY 1320.0175
GLY 1330.0160
SER 1340.0166
THR 1350.0147
PHE 1360.0177
THR 1370.0193
PHE 1380.0185
PHE 1390.0207
PRO 1400.0204
LEU 1410.0219
VAL 1420.0226
ILE 1430.0229
GLY 1440.0243
GLY 1450.0244
GLY 1460.0279
SER 1470.0262
ASP 1480.0228
ALA 1490.0221
MET 1500.0195
TYR 1510.0197
LEU 1520.0186
GLY 1530.0199
PHE 1540.0193
ALA 1550.0208
ALA 1560.0198
GLY 1570.0131
GLY 1580.0130
GLY 1590.0108
SER 1600.0114
ALA 1610.0190
GLY 1620.0169
GLY 1630.0143
GLU 1640.0132
ASN 1650.0140
HIS 1660.0127
VAL 1670.0157
ALA 1680.0151
PHE 1690.0186
GLY 1700.0196
PRO 1710.0279
GLY 1720.0281
PRO 1730.0315
GLY 1740.0264
VAL 1750.0232
ASP 1760.0185
LEU 1770.0190
THR 1780.0164
PHE 1790.0181
GLY 1800.0169
GLY 1810.0159
VAL 1820.0191
GLN 1830.0188
PHE 1840.0225
ALA 1850.0235
MET 1860.0287
VAL 1870.0344
ASN 1880.0399
ASN 1890.0471
GLY 1900.0518
PRO 1910.0473
GLY 1920.0384
PRO 1930.0443
GLY 1940.0341
GLU 1950.0081
SER 1960.0123
PHE 1970.0117
THR 1980.0171
ALA 1990.0206
GLN 2000.0194
PRO 2010.0211
ALA 2020.0091
ASP 2030.0098
MET 2040.0195
GLN 2050.0188
ALA 2060.0307
GLY 2070.0255
ILE 2080.0251
LYS 2090.0241
GLY 2100.0178
PRO 2110.0172
GLY 2120.0141
PRO 2130.0136
GLY 2140.0147
GLY 2150.0160
SER 2160.0168
ILE 2170.0126
GLN 2180.0141
VAL 2190.0118
ILE 2200.0116
ASN 2210.0104
GLY 2220.0093
SER 2230.0103
THR 2240.0155
ILE 2250.0154
GLY 2260.0193
THR 2270.0180
GLY 2280.0128
SER 2290.0111
LYS 2300.0089
LYS 2310.0096
THR 2320.0079
ILE 2330.0085
LEU 2340.0076
ILE 2350.0079
TYR 2360.0076
SER 2370.0070
ILE 2380.0070
ILE 2390.0086
GLY 2400.0085
VAL 2410.0092
LYS 2420.0085
LYS 2430.0080
GLY 2440.0092
THR 2450.0101
LEU 2460.0128
ALA 2470.0140
TRP 2480.0129
ALA 2490.0136
ARG 2500.0123
THR 2510.0139
GLY 2520.0150
PHE 2530.0137
SER 2540.0161
PRO 2550.0146
ALA 2560.0201
LYS 2570.0226
LYS 2580.0211
LEU 2590.0229
ASN 2600.0246
ALA 2610.0196
GLY 2620.0155
VAL 2630.0146
VAL 2640.0099
ARG 2650.0089
VAL 2660.0058
PHE 2670.0057
PHE 2680.0057
LEU 2690.0059
ASN 2700.0057
GLN 2710.0035
LYS 2720.0053
LYS 2730.0049
ALA 2740.0036
LYS 2750.0063
ASP 2760.0066
VAL 2770.0054
LEU 2780.0058
ARG 2790.0070
LYS 2800.0067
THR 2810.0064
SER 2820.0095
ARG 2830.0088
PRO 2840.0135
MET 2850.0189
VAL 2860.0214
ASP 2870.0103
LEU 2880.0160
THR 2890.0093
PHE 2900.0083
GLY 2910.0338
GLY 2920.0425

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.