CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 34  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0604
GLU 270.0135
PRO 280.0136
CYS 290.0122
VAL 300.0132
GLU 310.0132
VAL 320.0125
VAL 330.0118
PRO 340.0126
ASN 350.0112
ILE 360.0094
THR 370.0094
TYR 380.0100
GLN 390.0102
CYS 400.0097
MET 410.0096
GLU 420.0100
LEU 430.0106
ASN 440.0094
PHE 450.0085
TYR 460.0076
LYS 470.0075
ILE 480.0075
PRO 490.0093
ASP 500.0106
ASN 510.0122
LEU 520.0112
PRO 530.0111
PHE 540.0101
SER 550.0090
THR 560.0081
LYS 570.0064
ASN 580.0066
LEU 590.0068
ASP 600.0072
LEU 610.0068
SER 620.0070
PHE 630.0076
ASN 640.0071
PRO 650.0063
LEU 660.0055
ARG 670.0047
HIS 680.0046
LEU 690.0048
GLY 700.0055
SER 710.0062
TYR 720.0070
SER 730.0063
PHE 740.0064
PHE 750.0079
SER 760.0086
PHE 770.0073
PRO 780.0072
GLU 790.0063
LEU 800.0052
GLN 810.0043
VAL 820.0046
LEU 830.0044
ASP 840.0050
LEU 850.0046
SER 860.0055
ARG 870.0058
CYS 880.0052
GLU 890.0049
ILE 900.0044
GLN 910.0044
THR 920.0043
ILE 930.0045
GLU 940.0052
ASP 950.0059
GLY 960.0057
ALA 970.0051
TYR 980.0049
GLN 990.0061
SER 1000.0064
LEU 1010.0051
SER 1020.0055
HIS 1030.0046
LEU 1040.0038
SER 1050.0038
THR 1060.0039
LEU 1070.0039
ILE 1080.0041
LEU 1090.0041
THR 1100.0046
GLY 1110.0046
ASN 1120.0044
PRO 1130.0045
ILE 1140.0045
GLN 1150.0047
SER 1160.0050
LEU 1170.0048
ALA 1180.0055
LEU 1190.0061
GLY 1200.0057
ALA 1210.0048
PHE 1220.0049
SER 1230.0058
GLY 1240.0055
LEU 1250.0047
SER 1260.0054
SER 1270.0051
LEU 1280.0047
GLN 1290.0052
LYS 1300.0047
LEU 1310.0042
VAL 1320.0047
ALA 1330.0047
VAL 1340.0047
GLU 1350.0045
THR 1360.0044
ASN 1370.0045
LEU 1380.0047
ALA 1390.0045
SER 1400.0048
LEU 1410.0051
GLU 1420.0054
ASN 1430.0052
PHE 1440.0052
PRO 1450.0055
ILE 1460.0056
GLY 1470.0059
HIS 1480.0059
LEU 1490.0055
LYS 1500.0061
THR 1510.0058
LEU 1520.0056
LYS 1530.0058
GLU 1540.0053
LEU 1550.0049
ASN 1560.0045
VAL 1570.0051
ALA 1580.0047
HIS 1590.0043
ASN 1600.0041
LEU 1610.0038
ILE 1620.0043
GLN 1630.0042
SER 1640.0043
PHE 1650.0044
LYS 1660.0047
LEU 1670.0051
PRO 1680.0052
GLU 1690.0056
TYR 1700.0056
PHE 1710.0055
SER 1720.0063
ASN 1730.0063
LEU 1740.0058
THR 1750.0064
ASN 1760.0062
LEU 1770.0057
GLU 1780.0057
HIS 1790.0051
LEU 1800.0047
ASP 1810.0042
LEU 1820.0042
SER 1830.0041
SER 1840.0042
ASN 1850.0039
LYS 1860.0038
ILE 1870.0043
GLN 1880.0047
SER 1890.0048
ILE 1900.0047
TYR 1910.0052
CYS 1920.0053
THR 1930.0054
ASP 1940.0050
LEU 1950.0051
ARG 1960.0056
VAL 1970.0056
LEU 1980.0053
HIS 1990.0058
GLN 2000.0063
MET 2010.0061
PRO 2020.0066
LEU 2030.0066
LEU 2040.0057
ASN 2050.0055
LEU 2060.0047
SER 2070.0043
LEU 2080.0039
ASP 2090.0038
LEU 2100.0036
SER 2110.0040
LEU 2120.0047
ASN 2130.0044
PRO 2140.0051
MET 2150.0049
ASN 2160.0058
PHE 2170.0058
ILE 2180.0055
GLN 2190.0058
PRO 2200.0062
GLY 2210.0061
ALA 2220.0056
PHE 2230.0053
LYS 2240.0060
GLU 2250.0060
ILE 2260.0052
ARG 2270.0050
LEU 2280.0041
HIS 2290.0041
LYS 2300.0033
LEU 2310.0030
THR 2320.0034
LEU 2330.0037
ARG 2340.0046
ASN 2350.0056
ASN 2360.0051
PHE 2370.0067
ASP 2380.0081
SER 2390.0086
LEU 2400.0083
ASN 2410.0088
VAL 2420.0075
MET 2430.0067
LYS 2440.0072
THR 2450.0073
CYS 2460.0060
ILE 2470.0058
GLN 2480.0066
GLY 2490.0060
LEU 2500.0053
ALA 2510.0061
GLY 2520.0062
LEU 2530.0049
GLU 2540.0047
VAL 2550.0036
HIS 2560.0035
ARG 2570.0025
LEU 2580.0026
VAL 2590.0031
LEU 2600.0041
GLY 2610.0053
GLU 2620.0059
PHE 2630.0070
ARG 2640.0084
ASN 2650.0089
GLU 2660.0079
GLY 2670.0090
ASN 2680.0084
LEU 2690.0085
GLU 2700.0099
LYS 2710.0095
PHE 2720.0088
ASP 2730.0093
LYS 2740.0088
SER 2750.0087
ALA 2760.0074
LEU 2770.0066
GLU 2780.0075
GLY 2790.0068
LEU 2800.0058
CYS 2810.0067
ASN 2820.0068
LEU 2830.0054
THR 2840.0051
ILE 2850.0039
GLU 2860.0036
GLU 2870.0022
PHE 2880.0025
ARG 2890.0030
LEU 2900.0046
ALA 2910.0053
TYR 2920.0070
LEU 2930.0075
ASP 2940.0086
TYR 2950.0088
TYR 2960.0082
LEU 2970.0096
ASP 2980.0107
GLY 2990.0095
ILE 3000.0079
ILE 3010.0091
ASP 3020.0091
LEU 3030.0081
PHE 3040.0067
ASN 3050.0075
CYS 3060.0068
LEU 3070.0056
THR 3080.0067
ASN 3090.0061
VAL 3100.0043
SER 3110.0038
SER 3120.0021
PHE 3130.0028
SER 3140.0030
LEU 3150.0048
VAL 3160.0057
SER 3170.0073
VAL 3180.0075
THR 3190.0089
ILE 3200.0089
GLU 3210.0104
ARG 3220.0110
VAL 3230.0094
LYS 3240.0101
ASP 3250.0097
PHE 3260.0080
SER 3270.0093
TYR 3280.0094
ASN 3290.0088
PHE 3300.0073
GLY 3310.0067
TRP 3320.0050
GLN 3330.0043
HIS 3340.0024
LEU 3350.0028
GLU 3360.0027
LEU 3370.0045
VAL 3380.0053
ASN 3390.0070
CYS 3400.0074
LYS 3410.0087
PHE 3420.0094
GLY 3430.0113
GLN 3440.0104
PHE 3450.0084
PRO 3460.0081
THR 3470.0087
LEU 3480.0075
LYS 3490.0084
LEU 3500.0075
LYS 3510.0082
SER 3520.0072
LEU 3530.0053
LYS 3540.0046
ARG 3550.0025
LEU 3560.0024
THR 3570.0022
PHE 3580.0037
THR 3590.0043
SER 3600.0060
ASN 3610.0067
LYS 3620.0086
GLY 3630.0100
GLY 3640.0105
ASN 3650.0087
ALA 3660.0090
PHE 3670.0070
SER 3680.0080
GLU 3690.0078
VAL 3700.0074
ASP 3710.0081
LEU 3720.0070
PRO 3730.0081
SER 3740.0070
LEU 3750.0052
GLU 3760.0045
PHE 3770.0025
LEU 3780.0021
ASP 3790.0016
LEU 3800.0030
SER 3810.0033
ARG 3820.0046
ASN 3830.0053
GLY 3840.0059
LEU 3850.0055
SER 3860.0060
PHE 3870.0053
LYS 3880.0059
GLY 3890.0054
CYS 3900.0044
CYS 3910.0044
SER 3920.0058
GLN 3930.0067
SER 3940.0077
ASP 3950.0066
PHE 3960.0062
GLY 3970.0079
THR 3980.0071
ILE 3990.0074
SER 4000.0066
LEU 4010.0049
LYS 4020.0041
TYR 4030.0026
LEU 4040.0020
ASP 4050.0014
LEU 4060.0023
SER 4070.0026
PHE 4080.0038
ASN 4090.0041
GLY 4100.0048
VAL 4110.0044
ILE 4120.0038
THR 4130.0039
MET 4140.0035
SER 4150.0043
SER 4160.0044
ASN 4170.0038
PHE 4180.0044
LEU 4190.0056
GLY 4200.0063
LEU 4210.0052
GLU 4220.0053
GLN 4230.0053
LEU 4240.0040
GLU 4250.0036
HIS 4260.0025
LEU 4270.0019
ASP 4280.0017
PHE 4290.0020
GLN 4300.0025
HIS 4310.0033
SER 4320.0031
ASN 4330.0033
LEU 4340.0028
LYS 4350.0030
GLN 4360.0028
MET 4370.0023
SER 4380.0021
GLU 4390.0023
PHE 4400.0024
SER 4410.0024
VAL 4420.0026
PHE 4430.0027
LEU 4440.0031
SER 4450.0038
LEU 4460.0035
ARG 4470.0039
ASN 4480.0040
LEU 4490.0032
ILE 4500.0031
TYR 4510.0024
LEU 4520.0021
ASP 4530.0021
ILE 4540.0022
SER 4550.0026
HIS 4560.0030
THR 4570.0031
HIS 4580.0033
THR 4590.0027
ARG 4600.0029
VAL 4610.0027
ALA 4620.0029
PHE 4630.0024
ASN 4640.0023
GLY 4650.0020
ILE 4660.0020
PHE 4670.0021
ASN 4680.0021
GLY 4690.0023
LEU 4700.0023
SER 4710.0026
SER 4720.0028
LEU 4730.0024
GLU 4740.0024
VAL 4750.0023
LEU 4760.0021
LYS 4770.0024
MET 4780.0026
ALA 4790.0029
GLY 4800.0032
ASN 4810.0032
SER 4820.0038
PHE 4830.0038
GLN 4840.0041
GLU 4850.0047
ASN 4860.0045
PHE 4870.0040
LEU 4880.0032
PRO 4890.0032
ASP 4900.0027
ILE 4910.0024
PHE 4920.0016
THR 4930.0017
GLU 4940.0014
LEU 4950.0014
ARG 4960.0016
ASN 4970.0018
LEU 4980.0017
THR 4990.0020
PHE 5000.0020
LEU 5010.0018
ASP 5020.0024
LEU 5030.0028
SER 5040.0032
GLN 5050.0037
CYS 5060.0036
GLN 5070.0045
LEU 5080.0039
GLU 5090.0041
GLN 5100.0038
LEU 5110.0031
SER 5120.0033
PRO 5130.0030
THR 5140.0029
ALA 5150.0023
PHE 5160.0014
ASN 5170.0020
SER 5180.0018
LEU 5190.0012
SER 5200.0019
SER 5210.0020
LEU 5220.0015
GLN 5230.0023
VAL 5240.0022
LEU 5250.0016
ASN 5260.0023
MET 5270.0027
SER 5280.0034
HIS 5290.0043
ASN 5300.0041
ASN 5310.0046
PHE 5320.0035
PHE 5330.0034
SER 5340.0019
LEU 5350.0007
ASP 5360.0017
THR 5370.0017
PHE 5380.0027
PRO 5390.0020
TYR 5400.0016
LYS 5410.0031
CYS 5420.0028
LEU 5430.0023
ASN 5440.0033
SER 5450.0031
LEU 5460.0027
GLN 5470.0038
VAL 5480.0033
LEU 5490.0023
ASP 5500.0029
TYR 5510.0026
SER 5520.0041
LEU 5530.0051
ASN 5540.0043
HIS 5550.0043
ILE 5560.0027
MET 5570.0025
THR 5580.0008
SER 5590.0010
LYS 5600.0026
LYS 5610.0037
GLN 5620.0041
GLU 5630.0040
LEU 5640.0034
GLN 5650.0049
HIS 5660.0043
PHE 5670.0034
PRO 5680.0041
SER 5690.0054
SER 5700.0050
LEU 5710.0043
ALA 5720.0056
PHE 5730.0051
LEU 5740.0040
ASN 5750.0045
LEU 5760.0038
THR 5770.0057
GLN 5780.0063
ASN 5790.0049
ASP 5800.0049
PHE 5810.0038
ALA 5820.0034
CYS 5830.0041
THR 5840.0028
CYS 5850.0026
GLU 5860.0010
HIS 5870.0014
GLN 5880.0035
SER 5890.0040
PHE 5900.0028
LEU 5910.0040
GLN 5920.0056
TRP 5930.0051
ILE 5940.0052
LYS 5950.0073
ASP 5960.0075
GLN 5970.0070
ARG 5980.0076
GLN 5990.0082
LEU 6000.0064
LEU 6010.0063
VAL 6020.0072
GLU 6030.0083
VAL 6040.0081
GLU 6050.0093
ARG 6060.0085
MET 6070.0070
GLU 6080.0075
CYS 6090.0064
ALA 6100.0067
THR 6110.0058
PRO 6120.0061
SER 6130.0084
ASP 6140.0088
LYS 6150.0081
GLN 6160.0087
GLY 6170.0096
MET 6180.0091
PRO 6190.0087
VAL 6200.0069
LEU 6210.0081
SER 6220.0095
LEU 6230.0079
ASN 6240.0081
ILE 6250.0070
THR 6260.0072
CYS 6270.0062
GLU 10.0224
ALA 20.0131
ALA 30.0194
ALA 40.0198
LYS 50.0137
MET 60.0121
GLN 70.0133
ARG 80.0145
LEU 90.0155
VAL 100.0135
LEU 110.0113
LEU 120.0166
LEU 130.0181
ALA 140.0129
ILE 150.0156
SER 160.0172
LEU 170.0160
LEU 180.0140
LEU 190.0155
TYR 200.0160
GLN 210.0137
ASP 220.0125
LEU 230.0120
PRO 240.0125
VAL 250.0124
ARG 260.0127
SER 270.0105
GLU 280.0104
PHE 290.0107
GLU 300.0081
LEU 310.0055
ASP 320.0067
ARG 330.0067
ILE 340.0042
CYS 350.0048
GLY 360.0038
TYR 370.0020
GLY 380.0017
THR 390.0033
ALA 400.0046
ARG 410.0063
CYS 420.0087
ARG 430.0107
LYS 440.0134
LYS 450.0134
CYS 460.0113
ARG 470.0099
SER 480.0098
GLN 490.0078
GLU 500.0086
TYR 510.0103
ARG 520.0116
ILE 530.0110
GLY 540.0120
ARG 550.0124
CYS 560.0100
PRO 570.0100
ASN 580.0122
THR 590.0142
TYR 600.0135
ALA 610.0120
CYS 620.0096
CYS 630.0089
LEU 640.0074
ARG 650.0066
LYS 660.0071
TRP 670.0064
ASP 680.0059
GLU 690.0068
SER 700.0057
LEU 710.0059
LEU 720.0071
ASN 730.0070
ARG 740.0061
THR 750.0070
LYS 760.0080
PRO 770.0085
GLU 780.0089
ALA 790.0091
ALA 800.0092
ALA 810.0193
LYS 820.0232
LYS 830.0218
GLU 840.0249
MET 850.0250
ASN 860.0273
LEU 870.0241
SER 880.0256
VAL 890.0231
GLY 900.0257
LEU 910.0266
GLY 920.0303
GLY 930.0355
GLY 940.0369
SER 950.0326
ASN 960.0301
LEU 970.0258
SER 980.0270
VAL 990.0236
GLY 1000.0266
LEU 1010.0265
GLY 1020.0320
GLU 1030.0325
ILE 1040.0374
GLY 1050.0399
GLY 1060.0362
GLY 1070.0284
SER 1080.0211
LYS 1090.0188
LEU 1100.0145
LEU 1110.0158
ASP 1120.0140
ILE 1130.0167
ASN 1140.0173
LEU 1150.0193
GLY 1160.0249
ARG 1170.0260
GLY 1180.0280
GLY 1190.0247
GLY 1200.0230
SER 1210.0217
MET 1220.0209
VAL 1230.0202
ASP 1240.0212
LEU 1250.0203
THR 1260.0199
PHE 1270.0199
GLY 1280.0209
GLY 1290.0208
VAL 1300.0209
GLY 1310.0167
GLY 1320.0150
GLY 1330.0135
SER 1340.0122
THR 1350.0117
PHE 1360.0148
THR 1370.0140
PHE 1380.0130
PHE 1390.0122
PRO 1400.0115
LEU 1410.0105
VAL 1420.0104
ILE 1430.0114
GLY 1440.0127
GLY 1450.0148
GLY 1460.0161
SER 1470.0157
ASP 1480.0162
ALA 1490.0140
MET 1500.0129
TYR 1510.0110
LEU 1520.0118
GLY 1530.0117
PHE 1540.0131
ALA 1550.0136
ALA 1560.0110
GLY 1570.0119
GLY 1580.0127
GLY 1590.0149
SER 1600.0169
ALA 1610.0196
GLY 1620.0212
GLY 1630.0208
GLU 1640.0213
ASN 1650.0196
HIS 1660.0205
VAL 1670.0185
ALA 1680.0190
PHE 1690.0178
GLY 1700.0185
PRO 1710.0186
GLY 1720.0178
PRO 1730.0158
GLY 1740.0163
VAL 1750.0169
ASP 1760.0185
LEU 1770.0186
THR 1780.0212
PHE 1790.0219
GLY 1800.0247
GLY 1810.0268
VAL 1820.0249
GLN 1830.0228
PHE 1840.0201
ALA 1850.0188
MET 1860.0166
VAL 1870.0167
ASN 1880.0141
ASN 1890.0132
GLY 1900.0114
PRO 1910.0140
GLY 1920.0164
PRO 1930.0170
GLY 1940.0136
GLU 1950.0086
SER 1960.0196
PHE 1970.0098
THR 1980.0263
ALA 1990.0240
GLN 2000.0218
PRO 2010.0257
ALA 2020.0131
ASP 2030.0126
MET 2040.0262
GLN 2050.0277
ALA 2060.0429
GLY 2070.0153
ILE 2080.0188
LYS 2090.0254
GLY 2100.0223
PRO 2110.0094
GLY 2120.0154
PRO 2130.0261
GLY 2140.0257
GLY 2150.0258
SER 2160.0267
ILE 2170.0214
GLN 2180.0229
VAL 2190.0177
ILE 2200.0198
ASN 2210.0161
GLY 2220.0200
SER 2230.0207
THR 2240.0211
ILE 2250.0266
GLY 2260.0289
THR 2270.0269
GLY 2280.0285
SER 2290.0267
LYS 2300.0291
LYS 2310.0268
THR 2320.0290
ILE 2330.0251
LEU 2340.0256
ILE 2350.0255
TYR 2360.0214
SER 2370.0235
ILE 2380.0215
ILE 2390.0201
GLY 2400.0201
VAL 2410.0162
LYS 2420.0130
LYS 2430.0142
GLY 2440.0139
THR 2450.0117
LEU 2460.0113
ALA 2470.0131
TRP 2480.0147
ALA 2490.0201
ARG 2500.0231
THR 2510.0278
GLY 2520.0302
PHE 2530.0293
SER 2540.0331
PRO 2550.0307
ALA 2560.0357
LYS 2570.0347
LYS 2580.0278
LEU 2590.0250
ASN 2600.0190
ALA 2610.0135
GLY 2620.0150
VAL 2630.0189
VAL 2640.0151
ARG 2650.0199
VAL 2660.0186
PHE 2670.0168
PHE 2680.0159
LEU 2690.0143
ASN 2700.0130
GLN 2710.0088
LYS 2720.0062
LYS 2730.0056
ALA 2740.0074
LYS 2750.0067
ASP 2760.0048
VAL 2770.0084
LEU 2780.0108
ARG 2790.0111
LYS 2800.0126
THR 2810.0207
SER 2820.0230
ARG 2830.0283
PRO 2840.0334
MET 2850.0377
VAL 2860.0405
ASP 2870.0194
LEU 2880.0299
THR 2890.0110
PHE 2900.0124
GLY 2910.0446
GLY 2920.0604

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.