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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 35  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0690
GLU 270.0206
PRO 280.0243
CYS 290.0212
VAL 300.0247
GLU 310.0240
VAL 320.0263
VAL 330.0255
PRO 340.0230
ASN 350.0178
ILE 360.0191
THR 370.0193
TYR 380.0180
GLN 390.0197
CYS 400.0173
MET 410.0190
GLU 420.0212
LEU 430.0221
ASN 440.0213
PHE 450.0168
TYR 460.0168
LYS 470.0124
ILE 480.0083
PRO 490.0103
ASP 500.0085
ASN 510.0113
LEU 520.0102
PRO 530.0097
PHE 540.0070
SER 550.0122
THR 560.0124
LYS 570.0149
ASN 580.0153
LEU 590.0120
ASP 600.0136
LEU 610.0113
SER 620.0132
PHE 630.0154
ASN 640.0147
PRO 650.0148
LEU 660.0109
ARG 670.0105
HIS 680.0092
LEU 690.0067
GLY 700.0094
SER 710.0101
TYR 720.0085
SER 730.0056
PHE 740.0038
PHE 750.0060
SER 760.0035
PHE 770.0057
PRO 780.0097
GLU 790.0123
LEU 800.0108
GLN 810.0141
VAL 820.0124
LEU 830.0086
ASP 840.0094
LEU 850.0067
SER 860.0092
ARG 870.0100
CYS 880.0089
GLU 890.0094
ILE 900.0066
GLN 910.0079
THR 920.0083
ILE 930.0069
GLU 940.0098
ASP 950.0117
GLY 960.0106
ALA 970.0076
TYR 980.0076
GLN 990.0110
SER 1000.0104
LEU 1010.0103
SER 1020.0143
HIS 1030.0146
LEU 1040.0122
SER 1050.0137
THR 1060.0113
LEU 1070.0086
ILE 1080.0079
LEU 1090.0054
THR 1100.0070
GLY 1110.0065
ASN 1120.0052
PRO 1130.0053
ILE 1140.0043
GLN 1150.0068
SER 1160.0084
LEU 1170.0074
ALA 1180.0101
LEU 1190.0114
GLY 1200.0116
ALA 1210.0085
PHE 1220.0096
SER 1230.0123
GLY 1240.0129
LEU 1250.0121
SER 1260.0152
SER 1270.0140
LEU 1280.0122
GLN 1290.0120
LYS 1300.0104
LEU 1310.0089
VAL 1320.0078
ALA 1330.0065
VAL 1340.0069
GLU 1350.0059
THR 1360.0049
ASN 1370.0050
LEU 1380.0053
ALA 1390.0052
SER 1400.0057
LEU 1410.0065
GLU 1420.0067
ASN 1430.0069
PHE 1440.0072
PRO 1450.0086
ILE 1460.0090
GLY 1470.0106
HIS 1480.0118
LEU 1490.0114
LYS 1500.0128
THR 1510.0130
LEU 1520.0100
LYS 1530.0099
GLU 1540.0089
LEU 1550.0080
ASN 1560.0074
VAL 1570.0064
ALA 1580.0067
HIS 1590.0068
ASN 1600.0067
LEU 1610.0069
ILE 1620.0074
GLN 1630.0079
SER 1640.0075
PHE 1650.0072
LYS 1660.0070
LEU 1670.0065
PRO 1680.0067
GLU 1690.0072
TYR 1700.0082
PHE 1710.0080
SER 1720.0090
ASN 1730.0099
LEU 1740.0096
THR 1750.0107
ASN 1760.0111
LEU 1770.0081
GLU 1780.0084
HIS 1790.0077
LEU 1800.0070
ASP 1810.0068
LEU 1820.0065
SER 1830.0068
SER 1840.0071
ASN 1850.0073
LYS 1860.0080
ILE 1870.0088
GLN 1880.0100
SER 1890.0102
ILE 1900.0096
TYR 1910.0103
CYS 1920.0100
THR 1930.0090
ASP 1940.0082
LEU 1950.0082
ARG 1960.0081
VAL 1970.0072
LEU 1980.0079
HIS 1990.0086
GLN 2000.0082
MET 2010.0088
PRO 2020.0089
LEU 2030.0093
LEU 2040.0083
ASN 2050.0087
LEU 2060.0077
SER 2070.0069
LEU 2080.0065
ASP 2090.0064
LEU 2100.0069
SER 2110.0070
LEU 2120.0076
ASN 2130.0083
PRO 2140.0098
MET 2150.0100
ASN 2160.0116
PHE 2170.0118
ILE 2180.0112
GLN 2190.0123
PRO 2200.0131
GLY 2210.0128
ALA 2220.0111
PHE 2230.0106
LYS 2240.0122
GLU 2250.0119
ILE 2260.0102
ARG 2270.0095
LEU 2280.0083
HIS 2290.0085
LYS 2300.0075
LEU 2310.0071
THR 2320.0059
LEU 2330.0068
ARG 2340.0065
ASN 2350.0075
ASN 2360.0085
PHE 2370.0098
ASP 2380.0110
SER 2390.0114
LEU 2400.0112
ASN 2410.0128
VAL 2420.0121
MET 2430.0106
LYS 2440.0119
THR 2450.0128
CYS 2460.0112
ILE 2470.0111
GLN 2480.0129
GLY 2490.0122
LEU 2500.0111
ALA 2510.0127
GLY 2520.0132
LEU 2530.0113
GLU 2540.0111
VAL 2550.0095
HIS 2560.0095
ARG 2570.0083
LEU 2580.0077
VAL 2590.0062
LEU 2600.0065
GLY 2610.0061
GLU 2620.0061
PHE 2630.0061
ARG 2640.0065
ASN 2650.0076
GLU 2660.0082
GLY 2670.0095
ASN 2680.0086
LEU 2690.0092
GLU 2700.0102
LYS 2710.0098
PHE 2720.0089
ASP 2730.0101
LYS 2740.0106
SER 2750.0116
ALA 2760.0100
LEU 2770.0105
GLU 2780.0124
GLY 2790.0123
LEU 2800.0112
CYS 2810.0130
ASN 2820.0137
LEU 2830.0122
THR 2840.0122
ILE 2850.0106
GLU 2860.0108
GLU 2870.0091
PHE 2880.0080
ARG 2890.0063
LEU 2900.0057
ALA 2910.0042
TYR 2920.0037
LEU 2930.0044
ASP 2940.0054
TYR 2950.0054
TYR 2960.0042
LEU 2970.0063
ASP 2980.0071
GLY 2990.0073
ILE 3000.0075
ILE 3010.0092
ASP 3020.0110
LEU 3030.0097
PHE 3040.0095
ASN 3050.0112
CYS 3060.0116
LEU 3070.0106
THR 3080.0116
ASN 3090.0124
VAL 3100.0109
SER 3110.0111
SER 3120.0094
PHE 3130.0080
SER 3140.0063
LEU 3150.0050
VAL 3160.0036
SER 3170.0028
VAL 3180.0037
THR 3190.0041
ILE 3200.0047
GLU 3210.0050
ARG 3220.0059
VAL 3230.0055
LYS 3240.0064
ASP 3250.0074
PHE 3260.0070
SER 3270.0078
TYR 3280.0094
ASN 3290.0102
PHE 3300.0101
GLY 3310.0111
TRP 3320.0103
GLN 3330.0107
HIS 3340.0091
LEU 3350.0074
GLU 3360.0059
LEU 3370.0042
VAL 3380.0035
ASN 3390.0025
CYS 3400.0026
LYS 3410.0026
PHE 3420.0030
GLY 3430.0037
GLN 3440.0031
PHE 3450.0024
PRO 3460.0036
THR 3470.0050
LEU 3480.0059
LYS 3490.0073
LEU 3500.0084
LYS 3510.0097
SER 3520.0109
LEU 3530.0093
LYS 3540.0098
ARG 3550.0085
LEU 3560.0065
THR 3570.0059
PHE 3580.0042
THR 3590.0041
SER 3600.0035
ASN 3610.0021
LYS 3620.0016
GLY 3630.0021
GLY 3640.0023
ASN 3650.0019
ALA 3660.0022
PHE 3670.0011
SER 3680.0020
GLU 3690.0023
VAL 3700.0038
ASP 3710.0052
LEU 3720.0064
PRO 3730.0076
SER 3740.0086
LEU 3750.0074
GLU 3760.0081
PHE 3770.0072
LEU 3780.0056
ASP 3790.0056
LEU 3800.0039
SER 3810.0048
ARG 3820.0050
ASN 3830.0033
GLY 3840.0037
LEU 3850.0026
SER 3860.0029
PHE 3870.0028
LYS 3880.0037
GLY 3890.0040
CYS 3900.0033
CYS 3910.0028
SER 3920.0012
GLN 3930.0015
SER 3940.0022
ASP 3950.0014
PHE 3960.0030
GLY 3970.0038
THR 3980.0044
ILE 3990.0044
SER 4000.0058
LEU 4010.0052
LYS 4020.0063
TYR 4030.0062
LEU 4040.0050
ASP 4050.0055
LEU 4060.0046
SER 4070.0061
PHE 4080.0066
ASN 4090.0053
GLY 4100.0054
VAL 4110.0055
ILE 4120.0052
THR 4130.0054
MET 4140.0053
SER 4150.0048
SER 4160.0039
ASN 4170.0043
PHE 4180.0029
LEU 4190.0019
GLY 4200.0013
LEU 4210.0026
GLU 4220.0028
GLN 4230.0039
LEU 4240.0044
GLU 4250.0061
HIS 4260.0064
LEU 4270.0062
ASP 4280.0072
PHE 4290.0073
GLN 4300.0088
HIS 4310.0092
SER 4320.0075
ASN 4330.0078
LEU 4340.0072
LYS 4350.0072
GLN 4360.0071
MET 4370.0071
SER 4380.0077
GLU 4390.0072
PHE 4400.0065
SER 4410.0061
VAL 4420.0059
PHE 4430.0055
LEU 4440.0052
SER 4450.0041
LEU 4460.0046
ARG 4470.0043
ASN 4480.0047
LEU 4490.0057
ILE 4500.0066
TYR 4510.0074
LEU 4520.0079
ASP 4530.0089
ILE 4540.0091
SER 4550.0102
HIS 4560.0109
THR 4570.0101
HIS 4580.0104
THR 4590.0094
ARG 4600.0094
VAL 4610.0084
ALA 4620.0083
PHE 4630.0076
ASN 4640.0072
GLY 4650.0067
ILE 4660.0069
PHE 4670.0068
ASN 4680.0062
GLY 4690.0056
LEU 4700.0059
SER 4710.0055
SER 4720.0056
LEU 4730.0067
GLU 4740.0073
VAL 4750.0085
LEU 4760.0087
LYS 4770.0097
MET 4780.0099
ALA 4790.0109
GLY 4800.0118
ASN 4810.0111
SER 4820.0107
PHE 4830.0101
GLN 4840.0106
GLU 4850.0116
ASN 4860.0111
PHE 4870.0095
LEU 4880.0082
PRO 4890.0076
ASP 4900.0063
ILE 4910.0069
PHE 4920.0061
THR 4930.0052
GLU 4940.0053
LEU 4950.0059
ARG 4960.0054
ASN 4970.0063
LEU 4980.0071
THR 4990.0081
PHE 5000.0091
LEU 5010.0088
ASP 5020.0100
LEU 5030.0100
SER 5040.0111
GLN 5050.0125
CYS 5060.0118
GLN 5070.0123
LEU 5080.0104
GLU 5090.0105
GLN 5100.0092
LEU 5110.0074
SER 5120.0064
PRO 5130.0050
THR 5140.0045
ALA 5150.0051
PHE 5160.0045
ASN 5170.0034
SER 5180.0037
LEU 5190.0049
SER 5200.0058
SER 5210.0075
LEU 5220.0076
GLN 5230.0096
VAL 5240.0099
LEU 5250.0083
ASN 5260.0097
MET 5270.0092
SER 5280.0111
HIS 5290.0129
ASN 5300.0120
ASN 5310.0120
PHE 5320.0097
PHE 5330.0093
SER 5340.0068
LEU 5350.0046
ASP 5360.0056
THR 5370.0051
PHE 5380.0059
PRO 5390.0041
TYR 5400.0051
LYS 5410.0071
CYS 5420.0059
LEU 5430.0064
ASN 5440.0088
SER 5450.0098
LEU 5460.0089
GLN 5470.0124
VAL 5480.0115
LEU 5490.0088
ASP 5500.0099
TYR 5510.0081
SER 5520.0108
LEU 5530.0124
ASN 5540.0106
HIS 5550.0101
ILE 5560.0067
MET 5570.0064
THR 5580.0074
SER 5590.0078
LYS 5600.0113
LYS 5610.0119
GLN 5620.0128
GLU 5630.0109
LEU 5640.0100
GLN 5650.0129
HIS 5660.0109
PHE 5670.0088
PRO 5680.0105
SER 5690.0135
SER 5700.0134
LEU 5710.0120
ALA 5720.0165
PHE 5730.0148
LEU 5740.0109
ASN 5750.0114
LEU 5760.0083
THR 5770.0113
GLN 5780.0117
ASN 5790.0084
ASP 5800.0081
PHE 5810.0050
ALA 5820.0079
CYS 5830.0075
THR 5840.0125
CYS 5850.0170
GLU 5860.0179
HIS 5870.0131
GLN 5880.0151
SER 5890.0160
PHE 5900.0110
LEU 5910.0106
GLN 5920.0149
TRP 5930.0140
ILE 5940.0116
LYS 5950.0160
ASP 5960.0186
GLN 5970.0170
ARG 5980.0168
GLN 5990.0202
LEU 6000.0169
LEU 6010.0144
VAL 6020.0172
GLU 6030.0176
VAL 6040.0150
GLU 6050.0156
ARG 6060.0145
MET 6070.0099
GLU 6080.0079
CYS 6090.0048
ALA 6100.0083
THR 6110.0102
PRO 6120.0102
SER 6130.0108
ASP 6140.0074
LYS 6150.0048
GLN 6160.0073
GLY 6170.0089
MET 6180.0073
PRO 6190.0099
VAL 6200.0081
LEU 6210.0130
SER 6220.0138
LEU 6230.0110
ASN 6240.0150
ILE 6250.0178
THR 6260.0218
CYS 6270.0236
GLU 10.0186
ALA 20.0140
ALA 30.0205
ALA 40.0197
LYS 50.0149
MET 60.0174
GLN 70.0183
ARG 80.0150
LEU 90.0167
VAL 100.0182
LEU 110.0138
LEU 120.0140
LEU 130.0159
ALA 140.0138
ILE 150.0139
SER 160.0118
LEU 170.0116
LEU 180.0126
LEU 190.0132
TYR 200.0118
GLN 210.0118
ASP 220.0126
LEU 230.0117
PRO 240.0139
VAL 250.0118
ARG 260.0178
SER 270.0163
GLU 280.0171
PHE 290.0178
GLU 300.0153
LEU 310.0135
ASP 320.0145
ARG 330.0136
ILE 340.0116
CYS 350.0114
GLY 360.0092
TYR 370.0077
GLY 380.0085
THR 390.0083
ALA 400.0102
ARG 410.0103
CYS 420.0121
ARG 430.0114
LYS 440.0124
LYS 450.0107
CYS 460.0089
ARG 470.0072
SER 480.0079
GLN 490.0081
GLU 500.0084
TYR 510.0105
ARG 520.0121
ILE 530.0138
GLY 540.0156
ARG 550.0166
CYS 560.0158
PRO 570.0181
ASN 580.0185
THR 590.0184
TYR 600.0158
ALA 610.0135
CYS 620.0121
CYS 630.0096
LEU 640.0086
ARG 650.0072
LYS 660.0074
TRP 670.0065
ASP 680.0063
GLU 690.0069
SER 700.0068
LEU 710.0061
LEU 720.0061
ASN 730.0062
ARG 740.0064
THR 750.0065
LYS 760.0036
PRO 770.0023
GLU 780.0035
ALA 790.0033
ALA 800.0043
ALA 810.0081
LYS 820.0105
LYS 830.0095
GLU 840.0098
MET 850.0105
ASN 860.0106
LEU 870.0111
SER 880.0104
VAL 890.0114
GLY 900.0106
LEU 910.0128
GLY 920.0126
GLY 930.0135
GLY 940.0123
SER 950.0133
ASN 960.0124
LEU 970.0135
SER 980.0129
VAL 990.0139
GLY 1000.0139
LEU 1010.0164
GLY 1020.0220
GLU 1030.0250
ILE 1040.0330
GLY 1050.0383
GLY 1060.0412
GLY 1070.0341
SER 1080.0252
LYS 1090.0203
LEU 1100.0154
LEU 1110.0149
ASP 1120.0156
ILE 1130.0147
ASN 1140.0159
LEU 1150.0151
GLY 1160.0157
ARG 1170.0165
GLY 1180.0155
GLY 1190.0156
GLY 1200.0149
SER 1210.0133
MET 1220.0116
VAL 1230.0115
ASP 1240.0098
LEU 1250.0106
THR 1260.0092
PHE 1270.0100
GLY 1280.0095
GLY 1290.0097
VAL 1300.0112
GLY 1310.0110
GLY 1320.0116
GLY 1330.0096
SER 1340.0098
THR 1350.0078
PHE 1360.0106
THR 1370.0112
PHE 1380.0110
PHE 1390.0117
PRO 1400.0116
LEU 1410.0122
VAL 1420.0122
ILE 1430.0122
GLY 1440.0122
GLY 1450.0122
GLY 1460.0142
SER 1470.0143
ASP 1480.0132
ALA 1490.0132
MET 1500.0119
TYR 1510.0117
LEU 1520.0113
GLY 1530.0118
PHE 1540.0115
ALA 1550.0120
ALA 1560.0105
GLY 1570.0054
GLY 1580.0068
GLY 1590.0054
SER 1600.0067
ALA 1610.0107
GLY 1620.0103
GLY 1630.0097
GLU 1640.0099
ASN 1650.0101
HIS 1660.0099
VAL 1670.0112
ALA 1680.0107
PHE 1690.0121
GLY 1700.0119
PRO 1710.0155
GLY 1720.0154
PRO 1730.0177
GLY 1740.0154
VAL 1750.0144
ASP 1760.0124
LEU 1770.0127
THR 1780.0118
PHE 1790.0123
GLY 1800.0117
GLY 1810.0117
VAL 1820.0131
GLN 1830.0130
PHE 1840.0144
ALA 1850.0147
MET 1860.0175
VAL 1870.0205
ASN 1880.0233
ASN 1890.0274
GLY 1900.0297
PRO 1910.0264
GLY 1920.0228
PRO 1930.0284
GLY 1940.0230
GLU 1950.0076
SER 1960.0075
PHE 1970.0048
THR 1980.0147
ALA 1990.0164
GLN 2000.0155
PRO 2010.0198
ALA 2020.0100
ASP 2030.0068
MET 2040.0172
GLN 2050.0174
ALA 2060.0302
GLY 2070.0169
ILE 2080.0182
LYS 2090.0210
GLY 2100.0080
PRO 2110.0107
GLY 2120.0070
PRO 2130.0096
GLY 2140.0110
GLY 2150.0131
SER 2160.0129
ILE 2170.0096
GLN 2180.0099
VAL 2190.0086
ILE 2200.0078
ASN 2210.0076
GLY 2220.0072
SER 2230.0103
THR 2240.0174
ILE 2250.0191
GLY 2260.0247
THR 2270.0256
GLY 2280.0202
SER 2290.0178
LYS 2300.0127
LYS 2310.0141
THR 2320.0096
ILE 2330.0098
LEU 2340.0059
ILE 2350.0083
TYR 2360.0055
SER 2370.0068
ILE 2380.0071
ILE 2390.0072
GLY 2400.0079
VAL 2410.0039
LYS 2420.0038
LYS 2430.0041
GLY 2440.0047
THR 2450.0046
LEU 2460.0038
ALA 2470.0048
TRP 2480.0038
ALA 2490.0053
ARG 2500.0043
THR 2510.0067
GLY 2520.0068
PHE 2530.0074
SER 2540.0082
PRO 2550.0080
ALA 2560.0148
LYS 2570.0184
LYS 2580.0170
LEU 2590.0158
ASN 2600.0158
ALA 2610.0123
GLY 2620.0112
VAL 2630.0087
VAL 2640.0087
ARG 2650.0079
VAL 2660.0070
PHE 2670.0071
PHE 2680.0071
LEU 2690.0072
ASN 2700.0072
GLN 2710.0060
LYS 2720.0055
LYS 2730.0039
ALA 2740.0044
LYS 2750.0056
ASP 2760.0048
VAL 2770.0044
LEU 2780.0048
ARG 2790.0044
LYS 2800.0102
THR 2810.0181
SER 2820.0189
ARG 2830.0260
PRO 2840.0309
MET 2850.0357
VAL 2860.0484
ASP 2870.0236
LEU 2880.0357
THR 2890.0134
PHE 2900.0177
GLY 2910.0488
GLY 2920.0690

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.