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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 36  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0780
GLU 270.0096
PRO 280.0097
CYS 290.0089
VAL 300.0104
GLU 310.0108
VAL 320.0109
VAL 330.0105
PRO 340.0107
ASN 350.0089
ILE 360.0077
THR 370.0078
TYR 380.0077
GLN 390.0080
CYS 400.0067
MET 410.0070
GLU 420.0069
LEU 430.0067
ASN 440.0052
PHE 450.0042
TYR 460.0028
LYS 470.0028
ILE 480.0032
PRO 490.0052
ASP 500.0063
ASN 510.0080
LEU 520.0075
PRO 530.0076
PHE 540.0062
SER 550.0058
THR 560.0055
LYS 570.0046
ASN 580.0053
LEU 590.0047
ASP 600.0054
LEU 610.0043
SER 620.0052
PHE 630.0054
ASN 640.0041
PRO 650.0029
LEU 660.0018
ARG 670.0021
HIS 680.0019
LEU 690.0017
GLY 700.0023
SER 710.0028
TYR 720.0030
SER 730.0020
PHE 740.0021
PHE 750.0033
SER 760.0041
PHE 770.0032
PRO 780.0028
GLU 790.0026
LEU 800.0023
GLN 810.0030
VAL 820.0039
LEU 830.0032
ASP 840.0041
LEU 850.0035
SER 860.0048
ARG 870.0048
CYS 880.0035
GLU 890.0037
ILE 900.0032
GLN 910.0038
THR 920.0034
ILE 930.0031
GLU 940.0033
ASP 950.0038
GLY 960.0031
ALA 970.0023
TYR 980.0019
GLN 990.0028
SER 1000.0022
LEU 1010.0014
SER 1020.0022
HIS 1030.0017
LEU 1040.0023
SER 1050.0034
THR 1060.0040
LEU 1070.0038
ILE 1080.0043
LEU 1090.0043
THR 1100.0050
GLY 1110.0050
ASN 1120.0044
PRO 1130.0048
ILE 1140.0046
GLN 1150.0049
SER 1160.0047
LEU 1170.0044
ALA 1180.0046
LEU 1190.0049
GLY 1200.0041
ALA 1210.0035
PHE 1220.0037
SER 1230.0039
GLY 1240.0032
LEU 1250.0031
SER 1260.0035
SER 1270.0038
LEU 1280.0040
GLN 1290.0046
LYS 1300.0046
LEU 1310.0045
VAL 1320.0048
ALA 1330.0048
VAL 1340.0050
GLU 1350.0049
THR 1360.0048
ASN 1370.0048
LEU 1380.0047
ALA 1390.0046
SER 1400.0046
LEU 1410.0046
GLU 1420.0048
ASN 1430.0047
PHE 1440.0047
PRO 1450.0048
ILE 1460.0049
GLY 1470.0049
HIS 1480.0047
LEU 1490.0046
LYS 1500.0049
THR 1510.0048
LEU 1520.0049
LYS 1530.0050
GLU 1540.0049
LEU 1550.0048
ASN 1560.0046
VAL 1570.0046
ALA 1580.0045
HIS 1590.0042
ASN 1600.0042
LEU 1610.0041
ILE 1620.0040
GLN 1630.0037
SER 1640.0036
PHE 1650.0037
LYS 1660.0037
LEU 1670.0042
PRO 1680.0043
GLU 1690.0044
TYR 1700.0047
PHE 1710.0046
SER 1720.0049
ASN 1730.0049
LEU 1740.0049
THR 1750.0051
ASN 1760.0051
LEU 1770.0048
GLU 1780.0048
HIS 1790.0046
LEU 1800.0044
ASP 1810.0043
LEU 1820.0040
SER 1830.0039
SER 1840.0039
ASN 1850.0037
LYS 1860.0034
ILE 1870.0033
GLN 1880.0029
SER 1890.0027
ILE 1900.0028
TYR 1910.0026
CYS 1920.0027
THR 1930.0030
ASP 1940.0032
LEU 1950.0033
ARG 1960.0034
VAL 1970.0038
LEU 1980.0037
HIS 1990.0035
GLN 2000.0039
MET 2010.0042
PRO 2020.0041
LEU 2030.0043
LEU 2040.0042
ASN 2050.0042
LEU 2060.0040
SER 2070.0039
LEU 2080.0037
ASP 2090.0037
LEU 2100.0034
SER 2110.0036
LEU 2120.0037
ASN 2130.0034
PRO 2140.0032
MET 2150.0029
ASN 2160.0026
PHE 2170.0025
ILE 2180.0024
GLN 2190.0021
PRO 2200.0019
GLY 2210.0019
ALA 2220.0023
PHE 2230.0025
LYS 2240.0022
GLU 2250.0024
ILE 2260.0027
ARG 2270.0028
LEU 2280.0029
HIS 2290.0031
LYS 2300.0031
LEU 2310.0029
THR 2320.0032
LEU 2330.0031
ARG 2340.0035
ASN 2350.0036
ASN 2360.0032
PHE 2370.0036
ASP 2380.0039
SER 2390.0038
LEU 2400.0037
ASN 2410.0034
VAL 2420.0031
MET 2430.0032
LYS 2440.0029
THR 2450.0026
CYS 2460.0026
ILE 2470.0027
GLN 2480.0023
GLY 2490.0022
LEU 2500.0024
ALA 2510.0021
GLY 2520.0021
LEU 2530.0021
GLU 2540.0021
VAL 2550.0023
HIS 2560.0023
ARG 2570.0025
LEU 2580.0026
VAL 2590.0030
LEU 2600.0032
GLY 2610.0036
GLU 2620.0038
PHE 2630.0045
ARG 2640.0051
ASN 2650.0053
GLU 2660.0047
GLY 2670.0048
ASN 2680.0046
LEU 2690.0043
GLU 2700.0047
LYS 2710.0045
PHE 2720.0044
ASP 2730.0043
LYS 2740.0040
SER 2750.0037
ALA 2760.0036
LEU 2770.0032
GLU 2780.0030
GLY 2790.0027
LEU 2800.0026
CYS 2810.0024
ASN 2820.0022
LEU 2830.0020
THR 2840.0017
ILE 2850.0019
GLU 2860.0018
GLU 2870.0021
PHE 2880.0025
ARG 2890.0030
LEU 2900.0035
ALA 2910.0039
TYR 2920.0042
LEU 2930.0044
ASP 2940.0048
TYR 2950.0048
TYR 2960.0048
LEU 2970.0049
ASP 2980.0051
GLY 2990.0047
ILE 3000.0041
ILE 3010.0042
ASP 3020.0039
LEU 3030.0039
PHE 3040.0034
ASN 3050.0032
CYS 3060.0029
LEU 3070.0026
THR 3080.0026
ASN 3090.0020
VAL 3100.0020
SER 3110.0017
SER 3120.0021
PHE 3130.0026
SER 3140.0030
LEU 3150.0035
VAL 3160.0039
SER 3170.0043
VAL 3180.0044
THR 3190.0047
ILE 3200.0046
GLU 3210.0049
ARG 3220.0048
VAL 3230.0042
LYS 3240.0042
ASP 3250.0041
PHE 3260.0036
SER 3270.0037
TYR 3280.0036
ASN 3290.0031
PHE 3300.0028
GLY 3310.0022
TRP 3320.0020
GLN 3330.0015
HIS 3340.0017
LEU 3350.0023
GLU 3360.0027
LEU 3370.0032
VAL 3380.0034
ASN 3390.0038
CYS 3400.0040
LYS 3410.0043
PHE 3420.0043
GLY 3430.0046
GLN 3440.0041
PHE 3450.0035
PRO 3460.0035
THR 3470.0036
LEU 3480.0031
LYS 3490.0030
LEU 3500.0026
LYS 3510.0023
SER 3520.0019
LEU 3530.0018
LYS 3540.0014
ARG 3550.0015
LEU 3560.0020
THR 3570.0023
PHE 3580.0026
THR 3590.0027
SER 3600.0031
ASN 3610.0033
LYS 3620.0035
GLY 3630.0038
GLY 3640.0037
ASN 3650.0030
ALA 3660.0029
PHE 3670.0027
SER 3680.0030
GLU 3690.0028
VAL 3700.0027
ASP 3710.0027
LEU 3720.0023
PRO 3730.0023
SER 3740.0018
LEU 3750.0016
GLU 3760.0014
PHE 3770.0014
LEU 3780.0016
ASP 3790.0018
LEU 3800.0020
SER 3810.0021
ARG 3820.0023
ASN 3830.0023
GLY 3840.0021
LEU 3850.0020
SER 3860.0019
PHE 3870.0020
LYS 3880.0022
GLY 3890.0023
CYS 3900.0021
CYS 3910.0021
SER 3920.0025
GLN 3930.0025
SER 3940.0028
ASP 3950.0026
PHE 3960.0023
GLY 3970.0026
THR 3980.0024
ILE 3990.0028
SER 4000.0024
LEU 4010.0021
LYS 4020.0017
TYR 4030.0017
LEU 4040.0017
ASP 4050.0017
LEU 4060.0017
SER 4070.0019
PHE 4080.0020
ASN 4090.0018
GLY 4100.0017
VAL 4110.0015
ILE 4120.0019
THR 4130.0020
MET 4140.0022
SER 4150.0023
SER 4160.0024
ASN 4170.0025
PHE 4180.0025
LEU 4190.0026
GLY 4200.0026
LEU 4210.0025
GLU 4220.0027
GLN 4230.0025
LEU 4240.0024
GLU 4250.0024
HIS 4260.0022
LEU 4270.0020
ASP 4280.0022
PHE 4290.0022
GLN 4300.0026
HIS 4310.0026
SER 4320.0022
ASN 4330.0021
LEU 4340.0022
LYS 4350.0022
GLN 4360.0023
MET 4370.0024
SER 4380.0025
GLU 4390.0024
PHE 4400.0024
SER 4410.0024
VAL 4420.0025
PHE 4430.0025
LEU 4440.0026
SER 4450.0025
LEU 4460.0025
ARG 4470.0025
ASN 4480.0025
LEU 4490.0025
ILE 4500.0025
TYR 4510.0026
LEU 4520.0027
ASP 4530.0028
ILE 4540.0029
SER 4550.0031
HIS 4560.0032
THR 4570.0031
HIS 4580.0032
THR 4590.0030
ARG 4600.0029
VAL 4610.0027
ALA 4620.0026
PHE 4630.0024
ASN 4640.0023
GLY 4650.0022
ILE 4660.0024
PHE 4670.0025
ASN 4680.0024
GLY 4690.0024
LEU 4700.0024
SER 4710.0023
SER 4720.0024
LEU 4730.0025
GLU 4740.0026
VAL 4750.0028
LEU 4760.0029
LYS 4770.0031
MET 4780.0032
ALA 4790.0034
GLY 4800.0037
ASN 4810.0036
SER 4820.0036
PHE 4830.0034
GLN 4840.0035
GLU 4850.0038
ASN 4860.0037
PHE 4870.0033
LEU 4880.0027
PRO 4890.0025
ASP 4900.0020
ILE 4910.0023
PHE 4920.0020
THR 4930.0015
GLU 4940.0017
LEU 4950.0020
ARG 4960.0017
ASN 4970.0021
LEU 4980.0023
THR 4990.0026
PHE 5000.0029
LEU 5010.0028
ASP 5020.0033
LEU 5030.0033
SER 5040.0037
GLN 5050.0042
CYS 5060.0040
GLN 5070.0043
LEU 5080.0036
GLU 5090.0037
GLN 5100.0032
LEU 5110.0025
SER 5120.0022
PRO 5130.0016
THR 5140.0013
ALA 5150.0015
PHE 5160.0009
ASN 5170.0004
SER 5180.0004
LEU 5190.0011
SER 5200.0014
SER 5210.0021
LEU 5220.0022
GLN 5230.0029
VAL 5240.0030
LEU 5250.0025
ASN 5260.0031
MET 5270.0030
SER 5280.0038
HIS 5290.0045
ASN 5300.0042
ASN 5310.0043
PHE 5320.0036
PHE 5330.0035
SER 5340.0024
LEU 5350.0012
ASP 5360.0017
THR 5370.0011
PHE 5380.0018
PRO 5390.0009
TYR 5400.0008
LYS 5410.0019
CYS 5420.0015
LEU 5430.0016
ASN 5440.0026
SER 5450.0030
LEU 5460.0026
GLN 5470.0039
VAL 5480.0036
LEU 5490.0026
ASP 5500.0032
TYR 5510.0026
SER 5520.0037
LEU 5530.0045
ASN 5540.0039
HIS 5550.0038
ILE 5560.0024
MET 5570.0023
THR 5580.0024
SER 5590.0025
LYS 5600.0041
LYS 5610.0043
GLN 5620.0045
GLU 5630.0037
LEU 5640.0031
GLN 5650.0042
HIS 5660.0034
PHE 5670.0026
PRO 5680.0033
SER 5690.0045
SER 5700.0044
LEU 5710.0038
ALA 5720.0054
PHE 5730.0048
LEU 5740.0034
ASN 5750.0037
LEU 5760.0026
THR 5770.0040
GLN 5780.0044
ASN 5790.0032
ASP 5800.0032
PHE 5810.0016
ALA 5820.0026
CYS 5830.0018
THR 5840.0037
CYS 5850.0052
GLU 5860.0059
HIS 5870.0041
GLN 5880.0046
SER 5890.0050
PHE 5900.0031
LEU 5910.0027
GLN 5920.0045
TRP 5930.0042
ILE 5940.0033
LYS 5950.0049
ASP 5960.0059
GLN 5970.0055
ARG 5980.0055
GLN 5990.0067
LEU 6000.0055
LEU 6010.0047
VAL 6020.0058
GLU 6030.0061
VAL 6040.0051
GLU 6050.0056
ARG 6060.0053
MET 6070.0035
GLU 6080.0030
CYS 6090.0018
ALA 6100.0035
THR 6110.0039
PRO 6120.0037
SER 6130.0044
ASP 6140.0028
LYS 6150.0016
GLN 6160.0033
GLY 6170.0039
MET 6180.0027
PRO 6190.0034
VAL 6200.0021
LEU 6210.0040
SER 6220.0042
LEU 6230.0028
ASN 6240.0040
ILE 6250.0052
THR 6260.0066
CYS 6270.0072
GLU 10.0214
ALA 20.0244
ALA 30.0178
ALA 40.0074
LYS 50.0133
MET 60.0091
GLN 70.0081
ARG 80.0121
LEU 90.0104
VAL 100.0100
LEU 110.0179
LEU 120.0180
LEU 130.0140
ALA 140.0187
ILE 150.0239
SER 160.0175
LEU 170.0159
LEU 180.0187
LEU 190.0170
TYR 200.0127
GLN 210.0127
ASP 220.0121
LEU 230.0073
PRO 240.0056
VAL 250.0052
ARG 260.0039
SER 270.0029
GLU 280.0030
PHE 290.0031
GLU 300.0020
LEU 310.0007
ASP 320.0014
ARG 330.0017
ILE 340.0015
CYS 350.0026
GLY 360.0023
TYR 370.0021
GLY 380.0019
THR 390.0026
ALA 400.0026
ARG 410.0029
CYS 420.0038
ARG 430.0049
LYS 440.0063
LYS 450.0068
CYS 460.0064
ARG 470.0061
SER 480.0065
GLN 490.0055
GLU 500.0056
TYR 510.0064
ARG 520.0068
ILE 530.0066
GLY 540.0067
ARG 550.0064
CYS 560.0047
PRO 570.0044
ASN 580.0046
THR 590.0063
TYR 600.0060
ALA 610.0059
CYS 620.0050
CYS 630.0050
LEU 640.0048
ARG 650.0046
LYS 660.0056
TRP 670.0053
ASP 680.0051
GLU 690.0054
SER 700.0049
LEU 710.0049
LEU 720.0055
ASN 730.0052
ARG 740.0044
THR 750.0048
LYS 760.0054
PRO 770.0043
GLU 780.0026
ALA 790.0036
ALA 800.0053
ALA 810.0097
LYS 820.0102
LYS 830.0073
GLU 840.0107
MET 850.0080
ASN 860.0097
LEU 870.0076
SER 880.0067
VAL 890.0058
GLY 900.0043
LEU 910.0047
GLY 920.0039
GLY 930.0089
GLY 940.0123
SER 950.0121
ASN 960.0112
LEU 970.0118
SER 980.0127
VAL 990.0136
GLY 1000.0151
LEU 1010.0152
GLY 1020.0207
GLU 1030.0221
ILE 1040.0304
GLY 1050.0349
GLY 1060.0417
GLY 1070.0351
SER 1080.0288
LYS 1090.0207
LEU 1100.0154
LEU 1110.0132
ASP 1120.0162
ILE 1130.0140
ASN 1140.0174
LEU 1150.0151
GLY 1160.0163
ARG 1170.0173
GLY 1180.0114
GLY 1190.0113
GLY 1200.0096
SER 1210.0058
MET 1220.0058
VAL 1230.0047
ASP 1240.0031
LEU 1250.0038
THR 1260.0022
PHE 1270.0028
GLY 1280.0028
GLY 1290.0020
VAL 1300.0031
GLY 1310.0030
GLY 1320.0034
GLY 1330.0029
SER 1340.0030
THR 1350.0029
PHE 1360.0049
THR 1370.0049
PHE 1380.0063
PHE 1390.0064
PRO 1400.0082
LEU 1410.0116
VAL 1420.0142
ILE 1430.0163
GLY 1440.0194
GLY 1450.0215
GLY 1460.0224
SER 1470.0210
ASP 1480.0186
ALA 1490.0178
MET 1500.0153
TYR 1510.0116
LEU 1520.0101
GLY 1530.0085
PHE 1540.0070
ALA 1550.0054
ALA 1560.0042
GLY 1570.0024
GLY 1580.0021
GLY 1590.0027
SER 1600.0025
ALA 1610.0028
GLY 1620.0035
GLY 1630.0036
GLU 1640.0031
ASN 1650.0033
HIS 1660.0040
VAL 1670.0059
ALA 1680.0069
PHE 1690.0086
GLY 1700.0104
PRO 1710.0207
GLY 1720.0228
PRO 1730.0232
GLY 1740.0177
VAL 1750.0118
ASP 1760.0091
LEU 1770.0071
THR 1780.0063
PHE 1790.0047
GLY 1800.0055
GLY 1810.0075
VAL 1820.0073
GLN 1830.0085
PHE 1840.0085
ALA 1850.0107
MET 1860.0103
VAL 1870.0123
ASN 1880.0185
ASN 1890.0199
GLY 1900.0276
PRO 1910.0360
GLY 1920.0310
PRO 1930.0229
GLY 1940.0133
GLU 1950.0188
SER 1960.0113
PHE 1970.0300
THR 1980.0348
ALA 1990.0126
GLN 2000.0425
PRO 2010.0324
ALA 2020.0343
ASP 2030.0509
MET 2040.0621
GLN 2050.0571
ALA 2060.0780
GLY 2070.0381
ILE 2080.0367
LYS 2090.0667
GLY 2100.0680
PRO 2110.0160
GLY 2120.0088
PRO 2130.0101
GLY 2140.0331
GLY 2150.0490
SER 2160.0515
ILE 2170.0476
GLN 2180.0278
VAL 2190.0320
ILE 2200.0249
ASN 2210.0232
GLY 2220.0225
SER 2230.0220
THR 2240.0161
ILE 2250.0175
GLY 2260.0220
THR 2270.0224
GLY 2280.0206
SER 2290.0184
LYS 2300.0137
LYS 2310.0097
THR 2320.0065
ILE 2330.0068
LEU 2340.0091
ILE 2350.0109
TYR 2360.0101
SER 2370.0096
ILE 2380.0076
ILE 2390.0070
GLY 2400.0058
VAL 2410.0035
LYS 2420.0024
LYS 2430.0024
GLY 2440.0013
THR 2450.0005
LEU 2460.0043
ALA 2470.0054
TRP 2480.0069
ALA 2490.0082
ARG 2500.0098
THR 2510.0115
GLY 2520.0086
PHE 2530.0054
SER 2540.0043
PRO 2550.0060
ALA 2560.0113
LYS 2570.0161
LYS 2580.0166
LEU 2590.0173
ASN 2600.0193
ALA 2610.0137
GLY 2620.0086
VAL 2630.0074
VAL 2640.0066
ARG 2650.0114
VAL 2660.0154
PHE 2670.0107
PHE 2680.0107
LEU 2690.0052
ASN 2700.0046
GLN 2710.0032
LYS 2720.0029
LYS 2730.0028
ALA 2740.0029
LYS 2750.0025
ASP 2760.0026
VAL 2770.0026
LEU 2780.0025
ARG 2790.0028
LYS 2800.0053
THR 2810.0096
SER 2820.0107
ARG 2830.0124
PRO 2840.0148
MET 2850.0157
VAL 2860.0214
ASP 2870.0132
LEU 2880.0162
THR 2890.0091
PHE 2900.0113
GLY 2910.0166
GLY 2920.0243

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.