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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 39  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0869
GLU 270.0144
PRO 280.0153
CYS 290.0131
VAL 300.0148
GLU 310.0143
VAL 320.0146
VAL 330.0132
PRO 340.0125
ASN 350.0092
ILE 360.0084
THR 370.0097
TYR 380.0100
GLN 390.0111
CYS 400.0099
MET 410.0105
GLU 420.0111
LEU 430.0117
ASN 440.0104
PHE 450.0087
TYR 460.0079
LYS 470.0068
ILE 480.0059
PRO 490.0081
ASP 500.0091
ASN 510.0111
LEU 520.0091
PRO 530.0079
PHE 540.0058
SER 550.0046
THR 560.0053
LYS 570.0054
ASN 580.0069
LEU 590.0060
ASP 600.0073
LEU 610.0062
SER 620.0073
PHE 630.0079
ASN 640.0069
PRO 650.0057
LEU 660.0042
ARG 670.0030
HIS 680.0033
LEU 690.0034
GLY 700.0047
SER 710.0055
TYR 720.0058
SER 730.0045
PHE 740.0039
PHE 750.0055
SER 760.0055
PHE 770.0035
PRO 780.0040
GLU 790.0031
LEU 800.0035
GLN 810.0056
VAL 820.0061
LEU 830.0048
ASP 840.0057
LEU 850.0045
SER 860.0061
ARG 870.0057
CYS 880.0043
GLU 890.0038
ILE 900.0030
GLN 910.0032
THR 920.0035
ILE 930.0039
GLU 940.0050
ASP 950.0061
GLY 960.0057
ALA 970.0047
TYR 980.0046
GLN 990.0061
SER 1000.0054
LEU 1010.0047
SER 1020.0067
HIS 1030.0063
LEU 1040.0059
SER 1050.0072
THR 1060.0068
LEU 1070.0062
ILE 1080.0061
LEU 1090.0054
THR 1100.0061
GLY 1110.0054
ASN 1120.0045
PRO 1130.0043
ILE 1140.0044
GLN 1150.0044
SER 1160.0049
LEU 1170.0049
ALA 1180.0057
LEU 1190.0068
GLY 1200.0065
ALA 1210.0053
PHE 1220.0063
SER 1230.0072
GLY 1240.0070
LEU 1250.0068
SER 1260.0082
SER 1270.0082
LEU 1280.0076
GLN 1290.0081
LYS 1300.0075
LEU 1310.0067
VAL 1320.0066
ALA 1330.0063
VAL 1340.0062
GLU 1350.0058
THR 1360.0057
ASN 1370.0055
LEU 1380.0055
ALA 1390.0052
SER 1400.0053
LEU 1410.0056
GLU 1420.0057
ASN 1430.0057
PHE 1440.0061
PRO 1450.0067
ILE 1460.0071
GLY 1470.0072
HIS 1480.0077
LEU 1490.0076
LYS 1500.0083
THR 1510.0084
LEU 1520.0076
LYS 1530.0078
GLU 1540.0072
LEU 1550.0066
ASN 1560.0062
VAL 1570.0057
ALA 1580.0054
HIS 1590.0051
ASN 1600.0050
LEU 1610.0046
ILE 1620.0046
GLN 1630.0039
SER 1640.0038
PHE 1650.0038
LYS 1660.0039
LEU 1670.0046
PRO 1680.0050
GLU 1690.0053
TYR 1700.0061
PHE 1710.0059
SER 1720.0064
ASN 1730.0070
LEU 1740.0069
THR 1750.0074
ASN 1760.0077
LEU 1770.0066
GLU 1780.0066
HIS 1790.0064
LEU 1800.0057
ASP 1810.0055
LEU 1820.0049
SER 1830.0049
SER 1840.0049
ASN 1850.0044
LYS 1860.0037
ILE 1870.0037
GLN 1880.0031
SER 1890.0027
ILE 1900.0026
TYR 1910.0024
CYS 1920.0023
THR 1930.0027
ASP 1940.0030
LEU 1950.0030
ARG 1960.0031
VAL 1970.0038
LEU 1980.0038
HIS 1990.0030
GLN 2000.0037
MET 2010.0044
PRO 2020.0041
LEU 2030.0047
LEU 2040.0048
ASN 2050.0051
LEU 2060.0048
SER 2070.0048
LEU 2080.0045
ASP 2090.0049
LEU 2100.0043
SER 2110.0049
LEU 2120.0051
ASN 2130.0044
PRO 2140.0041
MET 2150.0034
ASN 2160.0029
PHE 2170.0025
ILE 2180.0025
GLN 2190.0022
PRO 2200.0025
GLY 2210.0024
ALA 2220.0021
PHE 2230.0025
LYS 2240.0023
GLU 2250.0023
ILE 2260.0027
ARG 2270.0028
LEU 2280.0034
HIS 2290.0040
LYS 2300.0042
LEU 2310.0040
THR 2320.0046
LEU 2330.0045
ARG 2340.0055
ASN 2350.0057
ASN 2360.0048
PHE 2370.0054
ASP 2380.0060
SER 2390.0059
LEU 2400.0057
ASN 2410.0050
VAL 2420.0044
MET 2430.0047
LYS 2440.0044
THR 2450.0036
CYS 2460.0034
ILE 2470.0040
GLN 2480.0035
GLY 2490.0029
LEU 2500.0031
ALA 2510.0031
GLY 2520.0026
LEU 2530.0029
GLU 2540.0029
VAL 2550.0034
HIS 2560.0035
ARG 2570.0043
LEU 2580.0045
VAL 2590.0053
LEU 2600.0056
GLY 2610.0064
GLU 2620.0064
PHE 2630.0073
ARG 2640.0083
ASN 2650.0086
GLU 2660.0076
GLY 2670.0082
ASN 2680.0077
LEU 2690.0072
GLU 2700.0080
LYS 2710.0077
PHE 2720.0078
ASP 2730.0078
LYS 2740.0074
SER 2750.0066
ALA 2760.0064
LEU 2770.0059
GLU 2780.0056
GLY 2790.0047
LEU 2800.0047
CYS 2810.0049
ASN 2820.0038
LEU 2830.0036
THR 2840.0035
ILE 2850.0038
GLU 2860.0038
GLU 2870.0043
PHE 2880.0051
ARG 2890.0060
LEU 2900.0069
ALA 2910.0075
TYR 2920.0077
LEU 2930.0079
ASP 2940.0088
TYR 2950.0089
TYR 2960.0096
LEU 2970.0099
ASP 2980.0105
GLY 2990.0097
ILE 3000.0087
ILE 3010.0088
ASP 3020.0079
LEU 3030.0076
PHE 3040.0069
ASN 3050.0067
CYS 3060.0059
LEU 3070.0056
THR 3080.0057
ASN 3090.0049
VAL 3100.0047
SER 3110.0043
SER 3120.0048
PHE 3130.0057
SER 3140.0064
LEU 3150.0074
VAL 3160.0080
SER 3170.0089
VAL 3180.0090
THR 3190.0098
ILE 3200.0097
GLU 3210.0105
ARG 3220.0101
VAL 3230.0089
LYS 3240.0090
ASP 3250.0086
PHE 3260.0075
SER 3270.0076
TYR 3280.0074
ASN 3290.0066
PHE 3300.0059
GLY 3310.0051
TRP 3320.0048
GLN 3330.0042
HIS 3340.0046
LEU 3350.0055
GLU 3360.0062
LEU 3370.0070
VAL 3380.0076
ASN 3390.0087
CYS 3400.0088
LYS 3410.0095
PHE 3420.0092
GLY 3430.0099
GLN 3440.0089
PHE 3450.0077
PRO 3460.0074
THR 3470.0075
LEU 3480.0065
LYS 3490.0063
LEU 3500.0055
LYS 3510.0051
SER 3520.0045
LEU 3530.0043
LYS 3540.0038
ARG 3550.0042
LEU 3560.0050
THR 3570.0059
PHE 3580.0063
THR 3590.0070
SER 3600.0080
ASN 3610.0081
LYS 3620.0089
GLY 3630.0089
GLY 3640.0084
ASN 3650.0075
ALA 3660.0069
PHE 3670.0065
SER 3680.0065
GLU 3690.0058
VAL 3700.0055
ASP 3710.0053
LEU 3720.0050
PRO 3730.0049
SER 3740.0041
LEU 3750.0038
GLU 3760.0038
PHE 3770.0039
LEU 3780.0042
ASP 3790.0052
LEU 3800.0055
SER 3810.0063
ARG 3820.0071
ASN 3830.0069
GLY 3840.0067
LEU 3850.0059
SER 3860.0055
PHE 3870.0053
LYS 3880.0047
GLY 3890.0040
CYS 3900.0040
CYS 3910.0039
SER 3920.0038
GLN 3930.0040
SER 3940.0048
ASP 3950.0047
PHE 3960.0045
GLY 3970.0052
THR 3980.0044
ILE 3990.0045
SER 4000.0042
LEU 4010.0038
LYS 4020.0042
TYR 4030.0045
LEU 4040.0043
ASP 4050.0051
LEU 4060.0051
SER 4070.0061
PHE 4080.0067
ASN 4090.0061
GLY 4100.0060
VAL 4110.0053
ILE 4120.0052
THR 4130.0047
MET 4140.0043
SER 4150.0038
SER 4160.0036
ASN 4170.0041
PHE 4180.0039
LEU 4190.0037
GLY 4200.0038
LEU 4210.0037
GLU 4220.0044
GLN 4230.0044
LEU 4240.0045
GLU 4250.0051
HIS 4260.0054
LEU 4270.0052
ASP 4280.0058
PHE 4290.0058
GLN 4300.0067
HIS 4310.0070
SER 4320.0064
ASN 4330.0064
LEU 4340.0058
LYS 4350.0055
GLN 4360.0051
MET 4370.0062
SER 4380.0064
GLU 4390.0057
PHE 4400.0052
SER 4410.0053
VAL 4420.0052
PHE 4430.0051
LEU 4440.0049
SER 4450.0045
LEU 4460.0048
ARG 4470.0052
ASN 4480.0051
LEU 4490.0054
ILE 4500.0058
TYR 4510.0061
LEU 4520.0063
ASP 4530.0067
ILE 4540.0067
SER 4550.0074
HIS 4560.0076
THR 4570.0077
HIS 4580.0083
THR 4590.0078
ARG 4600.0083
VAL 4610.0080
ALA 4620.0086
PHE 4630.0078
ASN 4640.0078
GLY 4650.0069
ILE 4660.0069
PHE 4670.0069
ASN 4680.0065
GLY 4690.0058
LEU 4700.0060
SER 4710.0058
SER 4720.0056
LEU 4730.0061
GLU 4740.0061
VAL 4750.0065
LEU 4760.0070
LYS 4770.0074
MET 4780.0078
ALA 4790.0084
GLY 4800.0088
ASN 4810.0086
SER 4820.0103
PHE 4830.0103
GLN 4840.0109
GLU 4850.0118
ASN 4860.0114
PHE 4870.0109
LEU 4880.0097
PRO 4890.0098
ASP 4900.0090
ILE 4910.0088
PHE 4920.0075
THR 4930.0074
GLU 4940.0068
LEU 4950.0063
ARG 4960.0057
ASN 4970.0055
LEU 4980.0059
THR 4990.0054
PHE 5000.0061
LEU 5010.0069
ASP 5020.0079
LEU 5030.0085
SER 5040.0089
GLN 5050.0096
CYS 5060.0097
GLN 5070.0113
LEU 5080.0105
GLU 5090.0108
GLN 5100.0104
LEU 5110.0095
SER 5120.0097
PRO 5130.0087
THR 5140.0087
ALA 5150.0086
PHE 5160.0070
ASN 5170.0070
SER 5180.0068
LEU 5190.0058
SER 5200.0046
SER 5210.0040
LEU 5220.0046
GLN 5230.0037
VAL 5240.0050
LEU 5250.0060
ASN 5260.0071
MET 5270.0081
SER 5280.0087
HIS 5290.0102
ASN 5300.0104
ASN 5310.0109
PHE 5320.0093
PHE 5330.0083
SER 5340.0065
LEU 5350.0048
ASP 5360.0063
THR 5370.0045
PHE 5380.0067
PRO 5390.0071
TYR 5400.0049
LYS 5410.0054
CYS 5420.0054
LEU 5430.0039
ASN 5440.0029
SER 5450.0019
LEU 5460.0022
GLN 5470.0019
VAL 5480.0037
LEU 5490.0041
ASP 5500.0060
TYR 5510.0062
SER 5520.0077
LEU 5530.0099
ASN 5540.0092
HIS 5550.0088
ILE 5560.0061
MET 5570.0042
THR 5580.0035
SER 5590.0046
LYS 5600.0078
LYS 5610.0095
GLN 5620.0090
GLU 5630.0081
LEU 5640.0056
GLN 5650.0071
HIS 5660.0060
PHE 5670.0032
PRO 5680.0033
SER 5690.0040
SER 5700.0023
LEU 5710.0015
ALA 5720.0041
PHE 5730.0046
LEU 5740.0034
ASN 5750.0058
LEU 5760.0050
THR 5770.0084
GLN 5780.0102
ASN 5790.0078
ASP 5800.0074
PHE 5810.0044
ALA 5820.0029
CYS 5830.0045
THR 5840.0035
CYS 5850.0067
GLU 5860.0059
HIS 5870.0041
GLN 5880.0072
SER 5890.0082
PHE 5900.0045
LEU 5910.0054
GLN 5920.0089
TRP 5930.0073
ILE 5940.0062
LYS 5950.0103
ASP 5960.0108
GLN 5970.0087
ARG 5980.0097
GLN 5990.0101
LEU 6000.0066
LEU 6010.0071
VAL 6020.0093
GLU 6030.0120
VAL 6040.0114
GLU 6050.0141
ARG 6060.0130
MET 6070.0098
GLU 6080.0108
CYS 6090.0086
ALA 6100.0093
THR 6110.0072
PRO 6120.0070
SER 6130.0113
ASP 6140.0125
LYS 6150.0116
GLN 6160.0126
GLY 6170.0146
MET 6180.0139
PRO 6190.0131
VAL 6200.0096
LEU 6210.0120
SER 6220.0152
LEU 6230.0126
ASN 6240.0140
ILE 6250.0129
THR 6260.0149
CYS 6270.0144
GLU 10.0205
ALA 20.0236
ALA 30.0288
ALA 40.0211
LYS 50.0079
MET 60.0129
GLN 70.0165
ARG 80.0152
LEU 90.0111
VAL 100.0083
LEU 110.0173
LEU 120.0207
LEU 130.0150
ALA 140.0156
ILE 150.0263
SER 160.0230
LEU 170.0181
LEU 180.0178
LEU 190.0209
TYR 200.0187
GLN 210.0132
ASP 220.0123
LEU 230.0126
PRO 240.0098
VAL 250.0117
ARG 260.0098
SER 270.0074
GLU 280.0080
PHE 290.0080
GLU 300.0056
LEU 310.0041
ASP 320.0043
ARG 330.0045
ILE 340.0047
CYS 350.0058
GLY 360.0065
TYR 370.0060
GLY 380.0056
THR 390.0065
ALA 400.0064
ARG 410.0051
CYS 420.0060
ARG 430.0073
LYS 440.0096
LYS 450.0106
CYS 460.0101
ARG 470.0094
SER 480.0104
GLN 490.0089
GLU 500.0091
TYR 510.0106
ARG 520.0114
ILE 530.0116
GLY 540.0119
ARG 550.0111
CYS 560.0083
PRO 570.0078
ASN 580.0073
THR 590.0102
TYR 600.0095
ALA 610.0094
CYS 620.0083
CYS 630.0082
LEU 640.0081
ARG 650.0076
LYS 660.0088
TRP 670.0083
ASP 680.0076
GLU 690.0083
SER 700.0070
LEU 710.0071
LEU 720.0080
ASN 730.0075
ARG 740.0064
THR 750.0072
LYS 760.0055
PRO 770.0038
GLU 780.0017
ALA 790.0016
ALA 800.0038
ALA 810.0086
LYS 820.0111
LYS 830.0142
GLU 840.0141
MET 850.0183
ASN 860.0157
LEU 870.0135
SER 880.0136
VAL 890.0111
GLY 900.0132
LEU 910.0126
GLY 920.0164
GLY 930.0198
GLY 940.0200
SER 950.0156
ASN 960.0136
LEU 970.0099
SER 980.0113
VAL 990.0102
GLY 1000.0130
LEU 1010.0129
GLY 1020.0154
GLU 1030.0235
ILE 1040.0283
GLY 1050.0364
GLY 1060.0478
GLY 1070.0366
SER 1080.0280
LYS 1090.0184
LEU 1100.0090
LEU 1110.0080
ASP 1120.0056
ILE 1130.0061
ASN 1140.0047
LEU 1150.0066
GLY 1160.0086
ARG 1170.0098
GLY 1180.0123
GLY 1190.0128
GLY 1200.0136
SER 1210.0117
MET 1220.0119
VAL 1230.0105
ASP 1240.0128
LEU 1250.0125
THR 1260.0149
PHE 1270.0155
GLY 1280.0179
GLY 1290.0185
VAL 1300.0194
GLY 1310.0127
GLY 1320.0133
GLY 1330.0115
SER 1340.0125
THR 1350.0107
PHE 1360.0122
THR 1370.0110
PHE 1380.0095
PHE 1390.0084
PRO 1400.0070
LEU 1410.0070
VAL 1420.0074
ILE 1430.0047
GLY 1440.0056
GLY 1450.0038
GLY 1460.0049
SER 1470.0043
ASP 1480.0046
ALA 1490.0031
MET 1500.0042
TYR 1510.0047
LEU 1520.0070
GLY 1530.0080
PHE 1540.0103
ALA 1550.0116
ALA 1560.0120
GLY 1570.0116
GLY 1580.0125
GLY 1590.0120
SER 1600.0121
ALA 1610.0115
GLY 1620.0131
GLY 1630.0134
GLU 1640.0154
ASN 1650.0137
HIS 1660.0138
VAL 1670.0109
ALA 1680.0110
PHE 1690.0092
GLY 1700.0108
PRO 1710.0152
GLY 1720.0137
PRO 1730.0100
GLY 1740.0075
VAL 1750.0072
ASP 1760.0098
LEU 1770.0104
THR 1780.0127
PHE 1790.0139
GLY 1800.0164
GLY 1810.0170
VAL 1820.0160
GLN 1830.0139
PHE 1840.0124
ALA 1850.0110
MET 1860.0099
VAL 1870.0093
ASN 1880.0112
ASN 1890.0169
GLY 1900.0217
PRO 1910.0291
GLY 1920.0194
PRO 1930.0123
GLY 1940.0125
GLU 1950.0110
SER 1960.0182
PHE 1970.0176
THR 1980.0190
ALA 1990.0202
GLN 2000.0194
PRO 2010.0160
ALA 2020.0080
ASP 2030.0095
MET 2040.0149
GLN 2050.0156
ALA 2060.0207
GLY 2070.0185
ILE 2080.0131
LYS 2090.0088
GLY 2100.0081
PRO 2110.0127
GLY 2120.0191
PRO 2130.0280
GLY 2140.0242
GLY 2150.0187
SER 2160.0227
ILE 2170.0204
GLN 2180.0214
VAL 2190.0228
ILE 2200.0221
ASN 2210.0215
GLY 2220.0250
SER 2230.0274
THR 2240.0341
ILE 2250.0383
GLY 2260.0370
THR 2270.0274
GLY 2280.0169
SER 2290.0157
LYS 2300.0143
LYS 2310.0244
THR 2320.0224
ILE 2330.0231
LEU 2340.0213
ILE 2350.0216
TYR 2360.0190
SER 2370.0161
ILE 2380.0148
ILE 2390.0101
GLY 2400.0098
VAL 2410.0084
LYS 2420.0072
LYS 2430.0072
GLY 2440.0084
THR 2450.0089
LEU 2460.0121
ALA 2470.0103
TRP 2480.0128
ALA 2490.0099
ARG 2500.0127
THR 2510.0129
GLY 2520.0100
PHE 2530.0126
SER 2540.0132
PRO 2550.0170
ALA 2560.0269
LYS 2570.0354
LYS 2580.0348
LEU 2590.0211
ASN 2600.0328
ALA 2610.0553
GLY 2620.0363
VAL 2630.0276
VAL 2640.0161
ARG 2650.0110
VAL 2660.0148
PHE 2670.0126
PHE 2680.0069
LEU 2690.0064
ASN 2700.0036
GLN 2710.0045
LYS 2720.0031
LYS 2730.0038
ALA 2740.0054
LYS 2750.0058
ASP 2760.0112
VAL 2770.0152
LEU 2780.0175
ARG 2790.0213
LYS 2800.0236
THR 2810.0390
SER 2820.0372
ARG 2830.0359
PRO 2840.0423
MET 2850.0481
VAL 2860.0869
ASP 2870.0608
LEU 2880.0360
THR 2890.0204
PHE 2900.0273
GLY 2910.0425
GLY 2920.0805

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.