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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 40  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0866
GLU 270.0025
PRO 280.0025
CYS 290.0020
VAL 300.0017
GLU 310.0015
VAL 320.0010
VAL 330.0008
PRO 340.0013
ASN 350.0015
ILE 360.0010
THR 370.0007
TYR 380.0011
GLN 390.0013
CYS 400.0016
MET 410.0018
GLU 420.0022
LEU 430.0024
ASN 440.0026
PHE 450.0022
TYR 460.0023
LYS 470.0020
ILE 480.0017
PRO 490.0019
ASP 500.0022
ASN 510.0024
LEU 520.0019
PRO 530.0019
PHE 540.0020
SER 550.0017
THR 560.0012
LYS 570.0008
ASN 580.0004
LEU 590.0006
ASP 600.0009
LEU 610.0012
SER 620.0014
PHE 630.0019
ASN 640.0019
PRO 650.0021
LEU 660.0016
ARG 670.0016
HIS 680.0013
LEU 690.0010
GLY 700.0011
SER 710.0011
TYR 720.0012
SER 730.0012
PHE 740.0012
PHE 750.0016
SER 760.0018
PHE 770.0013
PRO 780.0015
GLU 790.0014
LEU 800.0008
GLN 810.0007
VAL 820.0004
LEU 830.0003
ASP 840.0006
LEU 850.0008
SER 860.0012
ARG 870.0015
CYS 880.0014
GLU 890.0016
ILE 900.0013
GLN 910.0013
THR 920.0011
ILE 930.0007
GLU 940.0007
ASP 950.0005
GLY 960.0006
ALA 970.0007
TYR 980.0006
GLN 990.0009
SER 1000.0012
LEU 1010.0009
SER 1020.0012
HIS 1030.0012
LEU 1040.0007
SER 1050.0010
THR 1060.0009
LEU 1070.0007
ILE 1080.0009
LEU 1090.0009
THR 1100.0012
GLY 1110.0014
ASN 1120.0012
PRO 1130.0014
ILE 1140.0011
GLN 1150.0012
SER 1160.0009
LEU 1170.0007
ALA 1180.0004
LEU 1190.0004
GLY 1200.0003
ALA 1210.0003
PHE 1220.0004
SER 1230.0006
GLY 1240.0008
LEU 1250.0008
SER 1260.0012
SER 1270.0013
LEU 1280.0011
GLN 1290.0015
LYS 1300.0014
LEU 1310.0012
VAL 1320.0012
ALA 1330.0011
VAL 1340.0013
GLU 1350.0014
THR 1360.0012
ASN 1370.0012
LEU 1380.0011
ALA 1390.0013
SER 1400.0012
LEU 1410.0012
GLU 1420.0011
ASN 1430.0010
PHE 1440.0010
PRO 1450.0008
ILE 1460.0010
GLY 1470.0010
HIS 1480.0010
LEU 1490.0011
LYS 1500.0013
THR 1510.0014
LEU 1520.0014
LYS 1530.0017
GLU 1540.0016
LEU 1550.0015
ASN 1560.0015
VAL 1570.0011
ALA 1580.0013
HIS 1590.0013
ASN 1600.0011
LEU 1610.0011
ILE 1620.0013
GLN 1630.0013
SER 1640.0013
PHE 1650.0013
LYS 1660.0013
LEU 1670.0013
PRO 1680.0012
GLU 1690.0012
TYR 1700.0012
PHE 1710.0013
SER 1720.0013
ASN 1730.0013
LEU 1740.0013
THR 1750.0015
ASN 1760.0015
LEU 1770.0016
GLU 1780.0017
HIS 1790.0017
LEU 1800.0015
ASP 1810.0016
LEU 1820.0013
SER 1830.0014
SER 1840.0014
ASN 1850.0013
LYS 1860.0012
ILE 1870.0014
GLN 1880.0013
SER 1890.0013
ILE 1900.0013
TYR 1910.0013
CYS 1920.0013
THR 1930.0013
ASP 1940.0013
LEU 1950.0013
ARG 1960.0013
VAL 1970.0013
LEU 1980.0014
HIS 1990.0013
GLN 2000.0013
MET 2010.0014
PRO 2020.0014
LEU 2030.0014
LEU 2040.0015
ASN 2050.0014
LEU 2060.0014
SER 2070.0015
LEU 2080.0015
ASP 2090.0015
LEU 2100.0014
SER 2110.0015
LEU 2120.0015
ASN 2130.0015
PRO 2140.0015
MET 2150.0013
ASN 2160.0013
PHE 2170.0012
ILE 2180.0011
GLN 2190.0011
PRO 2200.0010
GLY 2210.0010
ALA 2220.0011
PHE 2230.0011
LYS 2240.0010
GLU 2250.0011
ILE 2260.0012
ARG 2270.0011
LEU 2280.0012
HIS 2290.0013
LYS 2300.0013
LEU 2310.0012
THR 2320.0012
LEU 2330.0012
ARG 2340.0012
ASN 2350.0014
ASN 2360.0014
PHE 2370.0014
ASP 2380.0017
SER 2390.0015
LEU 2400.0011
ASN 2410.0011
VAL 2420.0011
MET 2430.0010
LYS 2440.0007
THR 2450.0008
CYS 2460.0009
ILE 2470.0007
GLN 2480.0006
GLY 2490.0008
LEU 2500.0008
ALA 2510.0007
GLY 2520.0007
LEU 2530.0009
GLU 2540.0010
VAL 2550.0010
HIS 2560.0010
ARG 2570.0009
LEU 2580.0008
VAL 2590.0009
LEU 2600.0009
GLY 2610.0011
GLU 2620.0014
PHE 2630.0015
ARG 2640.0015
ASN 2650.0020
GLU 2660.0022
GLY 2670.0025
ASN 2680.0021
LEU 2690.0018
GLU 2700.0021
LYS 2710.0018
PHE 2720.0015
ASP 2730.0015
LYS 2740.0013
SER 2750.0011
ALA 2760.0010
LEU 2770.0007
GLU 2780.0006
GLY 2790.0004
LEU 2800.0003
CYS 2810.0005
ASN 2820.0003
LEU 2830.0005
THR 2840.0007
ILE 2850.0006
GLU 2860.0007
GLU 2870.0005
PHE 2880.0004
ARG 2890.0007
LEU 2900.0009
ALA 2910.0012
TYR 2920.0013
LEU 2930.0013
ASP 2940.0025
TYR 2950.0024
TYR 2960.0035
LEU 2970.0021
ASP 2980.0023
GLY 2990.0022
ILE 3000.0019
ILE 3010.0020
ASP 3020.0015
LEU 3030.0013
PHE 3040.0010
ASN 3050.0011
CYS 3060.0008
LEU 3070.0006
THR 3080.0008
ASN 3090.0008
VAL 3100.0005
SER 3110.0006
SER 3120.0004
PHE 3130.0004
SER 3140.0006
LEU 3150.0009
VAL 3160.0011
SER 3170.0015
VAL 3180.0016
THR 3190.0019
ILE 3200.0019
GLU 3210.0022
ARG 3220.0017
VAL 3230.0014
LYS 3240.0014
ASP 3250.0014
PHE 3260.0011
SER 3270.0012
TYR 3280.0013
ASN 3290.0011
PHE 3300.0008
GLY 3310.0007
TRP 3320.0006
GLN 3330.0007
HIS 3340.0005
LEU 3350.0004
GLU 3360.0008
LEU 3370.0008
VAL 3380.0010
ASN 3390.0012
CYS 3400.0013
LYS 3410.0016
PHE 3420.0012
GLY 3430.0011
GLN 3440.0009
PHE 3450.0009
PRO 3460.0011
THR 3470.0009
LEU 3480.0006
LYS 3490.0006
LEU 3500.0004
LYS 3510.0006
SER 3520.0010
LEU 3530.0006
LYS 3540.0009
ARG 3550.0009
LEU 3560.0008
THR 3570.0008
PHE 3580.0009
THR 3590.0011
SER 3600.0013
ASN 3610.0013
LYS 3620.0013
GLY 3630.0012
GLY 3640.0013
ASN 3650.0013
ALA 3660.0014
PHE 3670.0016
SER 3680.0014
GLU 3690.0012
VAL 3700.0009
ASP 3710.0006
LEU 3720.0005
PRO 3730.0006
SER 3740.0008
LEU 3750.0008
GLU 3760.0011
PHE 3770.0011
LEU 3780.0011
ASP 3790.0013
LEU 3800.0014
SER 3810.0016
ARG 3820.0014
ASN 3830.0014
GLY 3840.0015
LEU 3850.0015
SER 3860.0015
PHE 3870.0021
LYS 3880.0024
GLY 3890.0025
CYS 3900.0023
CYS 3910.0023
SER 3920.0019
GLN 3930.0016
SER 3940.0017
ASP 3950.0017
PHE 3960.0013
GLY 3970.0011
THR 3980.0010
ILE 3990.0010
SER 4000.0011
LEU 4010.0013
LYS 4020.0015
TYR 4030.0016
LEU 4040.0017
ASP 4050.0018
LEU 4060.0019
SER 4070.0016
PHE 4080.0015
ASN 4090.0017
GLY 4100.0018
VAL 4110.0020
ILE 4120.0023
THR 4130.0027
MET 4140.0028
SER 4150.0030
SER 4160.0030
ASN 4170.0029
PHE 4180.0025
LEU 4190.0024
GLY 4200.0020
LEU 4210.0020
GLU 4220.0023
GLN 4230.0020
LEU 4240.0021
GLU 4250.0022
HIS 4260.0022
LEU 4270.0025
ASP 4280.0022
PHE 4290.0022
GLN 4300.0019
HIS 4310.0019
SER 4320.0021
ASN 4330.0023
LEU 4340.0025
LYS 4350.0028
GLN 4360.0031
MET 4370.0030
SER 4380.0032
GLU 4390.0034
PHE 4400.0035
SER 4410.0033
VAL 4420.0031
PHE 4430.0030
LEU 4440.0031
SER 4450.0030
LEU 4460.0028
ARG 4470.0029
ASN 4480.0028
LEU 4490.0028
ILE 4500.0028
TYR 4510.0028
LEU 4520.0029
ASP 4530.0026
ILE 4540.0027
SER 4550.0024
HIS 4560.0023
THR 4570.0025
HIS 4580.0025
THR 4590.0028
ARG 4600.0028
VAL 4610.0030
ALA 4620.0031
PHE 4630.0032
ASN 4640.0032
GLY 4650.0033
ILE 4660.0032
PHE 4670.0032
ASN 4680.0032
GLY 4690.0033
LEU 4700.0032
SER 4710.0033
SER 4720.0032
LEU 4730.0032
GLU 4740.0033
VAL 4750.0034
LEU 4760.0032
LYS 4770.0030
MET 4780.0030
ALA 4790.0027
GLY 4800.0026
ASN 4810.0028
SER 4820.0025
PHE 4830.0027
GLN 4840.0027
GLU 4850.0025
ASN 4860.0024
PHE 4870.0024
LEU 4880.0026
PRO 4890.0026
ASP 4900.0028
ILE 4910.0030
PHE 4920.0030
THR 4930.0030
GLU 4940.0032
LEU 4950.0034
ARG 4960.0035
ASN 4970.0037
LEU 4980.0036
THR 4990.0039
PHE 5000.0038
LEU 5010.0035
ASP 5020.0032
LEU 5030.0030
SER 5040.0027
GLN 5050.0025
CYS 5060.0027
GLN 5070.0024
LEU 5080.0023
GLU 5090.0022
GLN 5100.0022
LEU 5110.0024
SER 5120.0021
PRO 5130.0023
THR 5140.0026
ALA 5150.0027
PHE 5160.0032
ASN 5170.0030
SER 5180.0033
LEU 5190.0036
SER 5200.0040
SER 5210.0044
LEU 5220.0042
GLN 5230.0047
VAL 5240.0043
LEU 5250.0036
ASN 5260.0035
MET 5270.0030
SER 5280.0028
HIS 5290.0027
ASN 5300.0025
ASN 5310.0023
PHE 5320.0021
PHE 5330.0020
SER 5340.0019
LEU 5350.0022
ASP 5360.0026
THR 5370.0031
PHE 5380.0033
PRO 5390.0030
TYR 5400.0038
LYS 5410.0044
CYS 5420.0041
LEU 5430.0043
ASN 5440.0050
SER 5450.0052
LEU 5460.0048
GLN 5470.0056
VAL 5480.0050
LEU 5490.0041
ASP 5500.0038
TYR 5510.0030
SER 5520.0034
LEU 5530.0034
ASN 5540.0027
HIS 5550.0025
ILE 5560.0020
MET 5570.0020
THR 5580.0021
SER 5590.0025
LYS 5600.0029
LYS 5610.0034
GLN 5620.0039
GLU 5630.0040
LEU 5640.0039
GLN 5650.0049
HIS 5660.0049
PHE 5670.0046
PRO 5680.0052
SER 5690.0060
SER 5700.0061
LEU 5710.0055
ALA 5720.0065
PHE 5730.0058
LEU 5740.0046
ASN 5750.0044
LEU 5760.0034
THR 5770.0039
GLN 5780.0039
ASN 5790.0029
ASP 5800.0027
PHE 5810.0021
ALA 5820.0026
CYS 5830.0024
THR 5840.0034
CYS 5850.0043
GLU 5860.0047
HIS 5870.0034
GLN 5880.0039
SER 5890.0045
PHE 5900.0034
LEU 5910.0030
GLN 5920.0041
TRP 5930.0044
ILE 5940.0038
LYS 5950.0046
ASP 5960.0057
GLN 5970.0056
ARG 5980.0055
GLN 5990.0067
LEU 6000.0061
LEU 6010.0053
VAL 6020.0059
GLU 6030.0057
VAL 6040.0048
GLU 6050.0049
ARG 6060.0048
MET 6070.0037
GLU 6080.0033
CYS 6090.0026
ALA 6100.0035
THR 6110.0038
PRO 6120.0042
SER 6130.0051
ASP 6140.0044
LYS 6150.0032
GLN 6160.0040
GLY 6170.0042
MET 6180.0032
PRO 6190.0033
VAL 6200.0026
LEU 6210.0035
SER 6220.0032
LEU 6230.0023
ASN 6240.0028
ILE 6250.0039
THR 6260.0048
CYS 6270.0059
GLU 10.0070
ALA 20.0093
ALA 30.0117
ALA 40.0086
LYS 50.0042
MET 60.0064
GLN 70.0079
ARG 80.0068
LEU 90.0048
VAL 100.0050
LEU 110.0077
LEU 120.0080
LEU 130.0054
ALA 140.0067
ILE 150.0104
SER 160.0084
LEU 170.0069
LEU 180.0071
LEU 190.0080
TYR 200.0071
GLN 210.0054
ASP 220.0048
LEU 230.0049
PRO 240.0044
VAL 250.0050
ARG 260.0048
SER 270.0039
GLU 280.0044
PHE 290.0045
GLU 300.0033
LEU 310.0026
ASP 320.0034
ARG 330.0033
ILE 340.0028
CYS 350.0033
GLY 360.0026
TYR 370.0018
GLY 380.0019
THR 390.0026
ALA 400.0032
ARG 410.0035
CYS 420.0044
ARG 430.0050
LYS 440.0062
LYS 450.0062
CYS 460.0051
ARG 470.0043
SER 480.0043
GLN 490.0037
GLU 500.0042
TYR 510.0051
ARG 520.0058
ILE 530.0060
GLY 540.0065
ARG 550.0067
CYS 560.0056
PRO 570.0058
ASN 580.0063
THR 590.0072
TYR 600.0066
ALA 610.0059
CYS 620.0051
CYS 630.0046
LEU 640.0042
ARG 650.0037
LYS 660.0035
TRP 670.0032
ASP 680.0028
GLU 690.0030
SER 700.0025
LEU 710.0022
LEU 720.0026
ASN 730.0025
ARG 740.0021
THR 750.0024
LYS 760.0035
PRO 770.0049
GLU 780.0041
ALA 790.0060
ALA 800.0079
ALA 810.0174
LYS 820.0125
LYS 830.0172
GLU 840.0147
MET 850.0190
ASN 860.0184
LEU 870.0174
SER 880.0185
VAL 890.0168
GLY 900.0188
LEU 910.0161
GLY 920.0187
GLY 930.0214
GLY 940.0249
SER 950.0204
ASN 960.0195
LEU 970.0151
SER 980.0157
VAL 990.0126
GLY 1000.0131
LEU 1010.0106
GLY 1020.0147
GLU 1030.0270
ILE 1040.0412
GLY 1050.0557
GLY 1060.0770
GLY 1070.0608
SER 1080.0496
LYS 1090.0304
LEU 1100.0191
LEU 1110.0154
ASP 1120.0168
ILE 1130.0160
ASN 1140.0184
LEU 1150.0173
GLY 1160.0205
ARG 1170.0226
GLY 1180.0189
GLY 1190.0199
GLY 1200.0198
SER 1210.0173
MET 1220.0179
VAL 1230.0182
ASP 1240.0195
LEU 1250.0200
THR 1260.0208
PHE 1270.0213
GLY 1280.0221
GLY 1290.0230
VAL 1300.0232
GLY 1310.0216
GLY 1320.0213
GLY 1330.0210
SER 1340.0201
THR 1350.0199
PHE 1360.0200
THR 1370.0187
PHE 1380.0167
PHE 1390.0157
PRO 1400.0142
LEU 1410.0114
VAL 1420.0123
ILE 1430.0135
GLY 1440.0160
GLY 1450.0200
GLY 1460.0245
SER 1470.0232
ASP 1480.0221
ALA 1490.0196
MET 1500.0166
TYR 1510.0153
LEU 1520.0160
GLY 1530.0164
PHE 1540.0182
ALA 1550.0195
ALA 1560.0188
GLY 1570.0197
GLY 1580.0194
GLY 1590.0212
SER 1600.0223
ALA 1610.0237
GLY 1620.0234
GLY 1630.0217
GLU 1640.0222
ASN 1650.0213
HIS 1660.0204
VAL 1670.0191
ALA 1680.0181
PHE 1690.0171
GLY 1700.0163
PRO 1710.0142
GLY 1720.0098
PRO 1730.0076
GLY 1740.0097
VAL 1750.0146
ASP 1760.0149
LEU 1770.0171
THR 1780.0183
PHE 1790.0204
GLY 1800.0214
GLY 1810.0190
VAL 1820.0157
GLN 1830.0129
PHE 1840.0120
ALA 1850.0080
MET 1860.0099
VAL 1870.0208
ASN 1880.0310
ASN 1890.0506
GLY 1900.0583
PRO 1910.0523
GLY 1920.0779
PRO 1930.0850
GLY 1940.0447
GLU 1950.0063
SER 1960.0866
PHE 1970.0805
THR 1980.0385
ALA 1990.0313
GLN 2000.0140
PRO 2010.0320
ALA 2020.0456
ASP 2030.0281
MET 2040.0315
GLN 2050.0232
ALA 2060.0152
GLY 2070.0038
ILE 2080.0067
LYS 2090.0057
GLY 2100.0081
PRO 2110.0048
GLY 2120.0089
PRO 2130.0136
GLY 2140.0137
GLY 2150.0107
SER 2160.0141
ILE 2170.0108
GLN 2180.0159
VAL 2190.0177
ILE 2200.0215
ASN 2210.0165
GLY 2220.0183
SER 2230.0140
THR 2240.0117
ILE 2250.0175
GLY 2260.0165
THR 2270.0140
GLY 2280.0097
SER 2290.0063
LYS 2300.0042
LYS 2310.0077
THR 2320.0107
ILE 2330.0139
LEU 2340.0186
ILE 2350.0220
TYR 2360.0187
SER 2370.0155
ILE 2380.0112
ILE 2390.0113
GLY 2400.0067
VAL 2410.0056
LYS 2420.0045
LYS 2430.0052
GLY 2440.0074
THR 2450.0075
LEU 2460.0140
ALA 2470.0163
TRP 2480.0195
ALA 2490.0212
ARG 2500.0245
THR 2510.0264
GLY 2520.0232
PHE 2530.0202
SER 2540.0189
PRO 2550.0148
ALA 2560.0188
LYS 2570.0183
LYS 2580.0161
LEU 2590.0201
ASN 2600.0220
ALA 2610.0234
GLY 2620.0123
VAL 2630.0136
VAL 2640.0092
ARG 2650.0215
VAL 2660.0237
PHE 2670.0182
PHE 2680.0140
LEU 2690.0095
ASN 2700.0049
GLN 2710.0042
LYS 2720.0032
LYS 2730.0047
ALA 2740.0061
LYS 2750.0064
ASP 2760.0073
VAL 2770.0070
LEU 2780.0078
ARG 2790.0109
LYS 2800.0115
THR 2810.0189
SER 2820.0185
ARG 2830.0197
PRO 2840.0249
MET 2850.0258
VAL 2860.0530
ASP 2870.0336
LEU 2880.0307
THR 2890.0081
PHE 2900.0240
GLY 2910.0301
GLY 2920.0502

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.