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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 41  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0539
GLU 270.0094
PRO 280.0108
CYS 290.0121
VAL 300.0169
GLU 310.0188
VAL 320.0212
VAL 330.0223
PRO 340.0222
ASN 350.0198
ILE 360.0183
THR 370.0165
TYR 380.0139
GLN 390.0142
CYS 400.0105
MET 410.0134
GLU 420.0148
LEU 430.0123
ASN 440.0118
PHE 450.0077
TYR 460.0091
LYS 470.0055
ILE 480.0014
PRO 490.0027
ASP 500.0061
ASN 510.0086
LEU 520.0108
PRO 530.0146
PHE 540.0144
SER 550.0159
THR 560.0130
LYS 570.0125
ASN 580.0117
LEU 590.0088
ASP 600.0099
LEU 610.0078
SER 620.0111
PHE 630.0135
ASN 640.0111
PRO 650.0123
LEU 660.0094
ARG 670.0117
HIS 680.0103
LEU 690.0075
GLY 700.0090
SER 710.0091
TYR 720.0077
SER 730.0049
PHE 740.0039
PHE 750.0077
SER 760.0079
PHE 770.0080
PRO 780.0101
GLU 790.0110
LEU 800.0078
GLN 810.0081
VAL 820.0073
LEU 830.0050
ASP 840.0071
LEU 850.0070
SER 860.0103
ARG 870.0124
CYS 880.0107
GLU 890.0130
ILE 900.0108
GLN 910.0129
THR 920.0114
ILE 930.0088
GLU 940.0097
ASP 950.0097
GLY 960.0077
ALA 970.0060
TYR 980.0037
GLN 990.0065
SER 1000.0070
LEU 1010.0050
SER 1020.0057
HIS 1030.0059
LEU 1040.0035
SER 1050.0042
THR 1060.0051
LEU 1070.0039
ILE 1080.0058
LEU 1090.0069
THR 1100.0089
GLY 1110.0106
ASN 1120.0106
PRO 1130.0122
ILE 1140.0107
GLN 1150.0123
SER 1160.0113
LEU 1170.0096
ALA 1180.0096
LEU 1190.0083
GLY 1200.0074
ALA 1210.0065
PHE 1220.0043
SER 1230.0050
GLY 1240.0043
LEU 1250.0021
SER 1260.0030
SER 1270.0018
LEU 1280.0018
GLN 1290.0036
LYS 1300.0043
LEU 1310.0042
VAL 1320.0055
ALA 1330.0059
VAL 1340.0066
GLU 1350.0074
THR 1360.0070
ASN 1370.0074
LEU 1380.0065
ALA 1390.0060
SER 1400.0052
LEU 1410.0049
GLU 1420.0054
ASN 1430.0055
PHE 1440.0052
PRO 1450.0047
ILE 1460.0044
GLY 1470.0037
HIS 1480.0030
LEU 1490.0030
LYS 1500.0035
THR 1510.0038
LEU 1520.0047
LYS 1530.0053
GLU 1540.0049
LEU 1550.0047
ASN 1560.0048
VAL 1570.0052
ALA 1580.0052
HIS 1590.0055
ASN 1600.0053
LEU 1610.0056
ILE 1620.0060
GLN 1630.0066
SER 1640.0068
PHE 1650.0066
LYS 1660.0071
LEU 1670.0064
PRO 1680.0061
GLU 1690.0065
TYR 1700.0058
PHE 1710.0059
SER 1720.0067
ASN 1730.0060
LEU 1740.0056
THR 1750.0066
ASN 1760.0063
LEU 1770.0060
GLU 1780.0059
HIS 1790.0049
LEU 1800.0046
ASP 1810.0042
LEU 1820.0045
SER 1830.0047
SER 1840.0054
ASN 1850.0053
LYS 1860.0063
ILE 1870.0072
GLN 1880.0085
SER 1890.0089
ILE 1900.0086
TYR 1910.0100
CYS 1920.0103
THR 1930.0103
ASP 1940.0088
LEU 1950.0087
ARG 1960.0098
VAL 1970.0087
LEU 1980.0084
HIS 1990.0101
GLN 2000.0105
MET 2010.0095
PRO 2020.0102
LEU 2030.0099
LEU 2040.0083
ASN 2050.0074
LEU 2060.0059
SER 2070.0048
LEU 2080.0042
ASP 2090.0037
LEU 2100.0045
SER 2110.0049
LEU 2120.0063
ASN 2130.0066
PRO 2140.0082
MET 2150.0082
ASN 2160.0098
PHE 2170.0101
ILE 2180.0094
GLN 2190.0107
PRO 2200.0109
GLY 2210.0110
ALA 2220.0099
PHE 2230.0088
LYS 2240.0102
GLU 2250.0101
ILE 2260.0085
ARG 2270.0074
LEU 2280.0057
HIS 2290.0052
LYS 2300.0037
LEU 2310.0036
THR 2320.0035
LEU 2330.0047
ARG 2340.0053
ASN 2350.0071
ASN 2360.0073
PHE 2370.0090
ASP 2380.0108
SER 2390.0109
LEU 2400.0100
ASN 2410.0111
VAL 2420.0104
MET 2430.0087
LYS 2440.0091
THR 2450.0102
CYS 2460.0089
ILE 2470.0078
GLN 2480.0092
GLY 2490.0092
LEU 2500.0078
ALA 2510.0087
GLY 2520.0089
LEU 2530.0072
GLU 2540.0065
VAL 2550.0048
HIS 2560.0045
ARG 2570.0028
LEU 2580.0029
VAL 2590.0033
LEU 2600.0046
GLY 2610.0059
GLU 2620.0071
PHE 2630.0083
ARG 2640.0104
ASN 2650.0110
GLU 2660.0101
GLY 2670.0112
ASN 2680.0101
LEU 2690.0099
GLU 2700.0114
LYS 2710.0102
PHE 2720.0079
ASP 2730.0077
LYS 2740.0066
SER 2750.0074
ALA 2760.0069
LEU 2770.0059
GLU 2780.0068
GLY 2790.0072
LEU 2800.0056
CYS 2810.0063
ASN 2820.0075
LEU 2830.0062
THR 2840.0056
ILE 2850.0040
GLU 2860.0038
GLU 2870.0024
PHE 2880.0024
ARG 2890.0033
LEU 2900.0044
ALA 2910.0054
TYR 2920.0069
LEU 2930.0073
ASP 2940.0088
TYR 2950.0084
TYR 2960.0079
LEU 2970.0051
ASP 2980.0045
GLY 2990.0038
ILE 3000.0036
ILE 3010.0035
ASP 3020.0041
LEU 3030.0043
PHE 3040.0035
ASN 3050.0038
CYS 3060.0043
LEU 3070.0028
THR 3080.0027
ASN 3090.0029
VAL 3100.0025
SER 3110.0026
SER 3120.0030
PHE 3130.0030
SER 3140.0037
LEU 3150.0043
VAL 3160.0052
SER 3170.0061
VAL 3180.0054
THR 3190.0054
ILE 3200.0045
GLU 3210.0046
ARG 3220.0036
VAL 3230.0036
LYS 3240.0038
ASP 3250.0038
PHE 3260.0037
SER 3270.0035
TYR 3280.0034
ASN 3290.0036
PHE 3300.0033
GLY 3310.0034
TRP 3320.0025
GLN 3330.0027
HIS 3340.0032
LEU 3350.0033
GLU 3360.0040
LEU 3370.0043
VAL 3380.0048
ASN 3390.0054
CYS 3400.0050
LYS 3410.0053
PHE 3420.0045
GLY 3430.0048
GLN 3440.0051
PHE 3450.0050
PRO 3460.0049
THR 3470.0038
LEU 3480.0037
LYS 3490.0039
LEU 3500.0038
LYS 3510.0039
SER 3520.0027
LEU 3530.0031
LYS 3540.0034
ARG 3550.0038
LEU 3560.0037
THR 3570.0044
PHE 3580.0044
THR 3590.0045
SER 3600.0047
ASN 3610.0046
LYS 3620.0051
GLY 3630.0051
GLY 3640.0059
ASN 3650.0057
ALA 3660.0066
PHE 3670.0042
SER 3680.0042
GLU 3690.0041
VAL 3700.0039
ASP 3710.0040
LEU 3720.0030
PRO 3730.0030
SER 3740.0036
LEU 3750.0035
GLU 3760.0040
PHE 3770.0042
LEU 3780.0040
ASP 3790.0040
LEU 3800.0037
SER 3810.0038
ARG 3820.0045
ASN 3830.0045
GLY 3840.0042
LEU 3850.0043
SER 3860.0044
PHE 3870.0037
LYS 3880.0039
GLY 3890.0039
CYS 3900.0040
CYS 3910.0043
SER 3920.0033
GLN 3930.0038
SER 3940.0033
ASP 3950.0031
PHE 3960.0038
GLY 3970.0029
THR 3980.0036
ILE 3990.0041
SER 4000.0049
LEU 4010.0044
LYS 4020.0054
TYR 4030.0051
LEU 4040.0043
ASP 4050.0041
LEU 4060.0035
SER 4070.0048
PHE 4080.0042
ASN 4090.0039
GLY 4100.0041
VAL 4110.0045
ILE 4120.0043
THR 4130.0047
MET 4140.0051
SER 4150.0048
SER 4160.0050
ASN 4170.0054
PHE 4180.0052
LEU 4190.0052
GLY 4200.0054
LEU 4210.0056
GLU 4220.0062
GLN 4230.0066
LEU 4240.0062
GLU 4250.0071
HIS 4260.0065
LEU 4270.0062
ASP 4280.0061
PHE 4290.0059
GLN 4300.0064
HIS 4310.0063
SER 4320.0051
ASN 4330.0056
LEU 4340.0059
LYS 4350.0062
GLN 4360.0066
MET 4370.0074
SER 4380.0081
GLU 4390.0075
PHE 4400.0077
SER 4410.0081
VAL 4420.0072
PHE 4430.0075
LEU 4440.0079
SER 4450.0077
LEU 4460.0079
ARG 4470.0090
ASN 4480.0089
LEU 4490.0085
ILE 4500.0091
TYR 4510.0086
LEU 4520.0087
ASP 4530.0086
ILE 4540.0085
SER 4550.0087
HIS 4560.0085
THR 4570.0080
HIS 4580.0080
THR 4590.0083
ARG 4600.0086
VAL 4610.0092
ALA 4620.0092
PHE 4630.0095
ASN 4640.0098
GLY 4650.0098
ILE 4660.0092
PHE 4670.0097
ASN 4680.0099
GLY 4690.0098
LEU 4700.0098
SER 4710.0102
SER 4720.0102
LEU 4730.0102
GLU 4740.0103
VAL 4750.0103
LEU 4760.0103
LYS 4770.0103
MET 4780.0104
ALA 4790.0102
GLY 4800.0102
ASN 4810.0103
SER 4820.0102
PHE 4830.0099
GLN 4840.0098
GLU 4850.0097
ASN 4860.0097
PHE 4870.0099
LEU 4880.0098
PRO 4890.0099
ASP 4900.0097
ILE 4910.0103
PHE 4920.0102
THR 4930.0102
GLU 4940.0105
LEU 4950.0103
ARG 4960.0101
ASN 4970.0106
LEU 4980.0108
THR 4990.0109
PHE 5000.0114
LEU 5010.0112
ASP 5020.0116
LEU 5030.0114
SER 5040.0115
GLN 5050.0120
CYS 5060.0119
GLN 5070.0115
LEU 5080.0107
GLU 5090.0103
GLN 5100.0095
LEU 5110.0090
SER 5120.0088
PRO 5130.0075
THR 5140.0078
ALA 5150.0089
PHE 5160.0086
ASN 5170.0078
SER 5180.0084
LEU 5190.0090
SER 5200.0086
SER 5210.0098
LEU 5220.0106
GLN 5230.0114
VAL 5240.0117
LEU 5250.0108
ASN 5260.0117
MET 5270.0112
SER 5280.0124
HIS 5290.0137
ASN 5300.0130
ASN 5310.0126
PHE 5320.0118
PHE 5330.0113
SER 5340.0083
LEU 5350.0056
ASP 5360.0048
THR 5370.0036
PHE 5380.0035
PRO 5390.0053
TYR 5400.0055
LYS 5410.0048
CYS 5420.0058
LEU 5430.0073
ASN 5440.0085
SER 5450.0102
LEU 5460.0097
GLN 5470.0128
VAL 5480.0123
LEU 5490.0102
ASP 5500.0113
TYR 5510.0099
SER 5520.0121
LEU 5530.0144
ASN 5540.0132
HIS 5550.0130
ILE 5560.0094
MET 5570.0109
THR 5580.0101
SER 5590.0080
LYS 5600.0118
LYS 5610.0100
GLN 5620.0099
GLU 5630.0069
LEU 5640.0057
GLN 5650.0077
HIS 5660.0058
PHE 5670.0062
PRO 5680.0082
SER 5690.0111
SER 5700.0120
LEU 5710.0107
ALA 5720.0151
PHE 5730.0136
LEU 5740.0098
ASN 5750.0108
LEU 5760.0081
THR 5770.0110
GLN 5780.0138
ASN 5790.0121
ASP 5800.0138
PHE 5810.0105
ALA 5820.0172
CYS 5830.0162
THR 5840.0222
CYS 5850.0251
GLU 5860.0255
HIS 5870.0180
GLN 5880.0184
SER 5890.0167
PHE 5900.0106
LEU 5910.0105
GLN 5920.0137
TRP 5930.0109
ILE 5940.0067
LYS 5950.0109
ASP 5960.0145
GLN 5970.0122
ARG 5980.0110
GLN 5990.0155
LEU 6000.0135
LEU 6010.0103
VAL 6020.0139
GLU 6030.0132
VAL 6040.0084
GLU 6050.0089
ARG 6060.0115
MET 6070.0078
GLU 6080.0098
CYS 6090.0128
ALA 6100.0185
THR 6110.0224
PRO 6120.0256
SER 6130.0281
ASP 6140.0262
LYS 6150.0193
GLN 6160.0201
GLY 6170.0152
MET 6180.0100
PRO 6190.0050
VAL 6200.0053
LEU 6210.0057
SER 6220.0073
LEU 6230.0123
ASN 6240.0194
ILE 6250.0221
THR 6260.0295
CYS 6270.0366
GLU 10.0189
ALA 20.0243
ALA 30.0254
ALA 40.0147
LYS 50.0051
MET 60.0098
GLN 70.0138
ARG 80.0120
LEU 90.0075
VAL 100.0090
LEU 110.0184
LEU 120.0193
LEU 130.0134
ALA 140.0177
ILE 150.0258
SER 160.0203
LEU 170.0155
LEU 180.0160
LEU 190.0171
TYR 200.0137
GLN 210.0085
ASP 220.0073
LEU 230.0071
PRO 240.0042
VAL 250.0061
ARG 260.0055
SER 270.0046
GLU 280.0059
PHE 290.0068
GLU 300.0047
LEU 310.0040
ASP 320.0057
ARG 330.0052
ILE 340.0046
CYS 350.0064
GLY 360.0053
TYR 370.0046
GLY 380.0047
THR 390.0053
ALA 400.0058
ARG 410.0063
CYS 420.0092
ARG 430.0110
LYS 440.0144
LYS 450.0142
CYS 460.0114
ARG 470.0097
SER 480.0092
GLN 490.0067
GLU 500.0080
TYR 510.0104
ARG 520.0127
ILE 530.0131
GLY 540.0149
ARG 550.0155
CYS 560.0128
PRO 570.0136
ASN 580.0144
THR 590.0172
TYR 600.0152
ALA 610.0131
CYS 620.0107
CYS 630.0093
LEU 640.0076
ARG 650.0058
LYS 660.0066
TRP 670.0060
ASP 680.0055
GLU 690.0068
SER 700.0057
LEU 710.0064
LEU 720.0080
ASN 730.0071
ARG 740.0063
THR 750.0080
LYS 760.0087
PRO 770.0085
GLU 780.0073
ALA 790.0082
ALA 800.0093
ALA 810.0102
LYS 820.0117
LYS 830.0137
GLU 840.0109
MET 850.0145
ASN 860.0116
LEU 870.0102
SER 880.0102
VAL 890.0087
GLY 900.0095
LEU 910.0084
GLY 920.0099
GLY 930.0113
GLY 940.0121
SER 950.0102
ASN 960.0093
LEU 970.0079
SER 980.0091
VAL 990.0088
GLY 1000.0104
LEU 1010.0105
GLY 1020.0176
GLU 1030.0288
ILE 1040.0362
GLY 1050.0474
GLY 1060.0539
GLY 1070.0375
SER 1080.0259
LYS 1090.0145
LEU 1100.0091
LEU 1110.0095
ASP 1120.0102
ILE 1130.0090
ASN 1140.0098
LEU 1150.0085
GLY 1160.0097
ARG 1170.0080
GLY 1180.0094
GLY 1190.0083
GLY 1200.0089
SER 1210.0081
MET 1220.0080
VAL 1230.0072
ASP 1240.0087
LEU 1250.0087
THR 1260.0110
PHE 1270.0120
GLY 1280.0146
GLY 1290.0153
VAL 1300.0167
GLY 1310.0125
GLY 1320.0124
GLY 1330.0112
SER 1340.0113
THR 1350.0102
PHE 1360.0092
THR 1370.0083
PHE 1380.0070
PHE 1390.0079
PRO 1400.0065
LEU 1410.0085
VAL 1420.0085
ILE 1430.0087
GLY 1440.0092
GLY 1450.0100
GLY 1460.0103
SER 1470.0084
ASP 1480.0063
ALA 1490.0072
MET 1500.0067
TYR 1510.0082
LEU 1520.0081
GLY 1530.0101
PHE 1540.0106
ALA 1550.0121
ALA 1560.0120
GLY 1570.0117
GLY 1580.0110
GLY 1590.0113
SER 1600.0111
ALA 1610.0118
GLY 1620.0128
GLY 1630.0118
GLU 1640.0120
ASN 1650.0090
HIS 1660.0082
VAL 1670.0052
ALA 1680.0058
PHE 1690.0049
GLY 1700.0078
PRO 1710.0132
GLY 1720.0115
PRO 1730.0109
GLY 1740.0064
VAL 1750.0033
ASP 1760.0024
LEU 1770.0028
THR 1780.0047
PHE 1790.0064
GLY 1800.0083
GLY 1810.0082
VAL 1820.0076
GLN 1830.0055
PHE 1840.0053
ALA 1850.0043
MET 1860.0078
VAL 1870.0153
ASN 1880.0204
ASN 1890.0297
GLY 1900.0350
PRO 1910.0430
GLY 1920.0422
PRO 1930.0311
GLY 1940.0148
GLU 1950.0040
SER 1960.0354
PHE 1970.0316
THR 1980.0138
ALA 1990.0119
GLN 2000.0043
PRO 2010.0150
ALA 2020.0220
ASP 2030.0154
MET 2040.0065
GLN 2050.0084
ALA 2060.0117
GLY 2070.0070
ILE 2080.0087
LYS 2090.0063
GLY 2100.0094
PRO 2110.0056
GLY 2120.0191
PRO 2130.0249
GLY 2140.0119
GLY 2150.0157
SER 2160.0261
ILE 2170.0256
GLN 2180.0216
VAL 2190.0230
ILE 2200.0186
ASN 2210.0133
GLY 2220.0141
SER 2230.0164
THR 2240.0173
ILE 2250.0217
GLY 2260.0268
THR 2270.0244
GLY 2280.0209
SER 2290.0198
LYS 2300.0208
LYS 2310.0190
THR 2320.0197
ILE 2330.0203
LEU 2340.0200
ILE 2350.0227
TYR 2360.0208
SER 2370.0205
ILE 2380.0203
ILE 2390.0175
GLY 2400.0182
VAL 2410.0157
LYS 2420.0133
LYS 2430.0148
GLY 2440.0171
THR 2450.0163
LEU 2460.0177
ALA 2470.0170
TRP 2480.0160
ALA 2490.0171
ARG 2500.0167
THR 2510.0205
GLY 2520.0210
PHE 2530.0241
SER 2540.0272
PRO 2550.0273
ALA 2560.0336
LYS 2570.0352
LYS 2580.0400
LEU 2590.0391
ASN 2600.0433
ALA 2610.0473
GLY 2620.0379
VAL 2630.0365
VAL 2640.0277
ARG 2650.0280
VAL 2660.0280
PHE 2670.0246
PHE 2680.0217
LEU 2690.0186
ASN 2700.0179
GLN 2710.0086
LYS 2720.0064
LYS 2730.0068
ALA 2740.0077
LYS 2750.0064
ASP 2760.0051
VAL 2770.0075
LEU 2780.0079
ARG 2790.0077
LYS 2800.0077
THR 2810.0103
SER 2820.0078
ARG 2830.0054
PRO 2840.0025
MET 2850.0081
VAL 2860.0153
ASP 2870.0072
LEU 2880.0170
THR 2890.0062
PHE 2900.0120
GLY 2910.0211
GLY 2920.0218

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.