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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 42  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0893
GLU 270.0048
PRO 280.0051
CYS 290.0050
VAL 300.0063
GLU 310.0067
VAL 320.0070
VAL 330.0070
PRO 340.0072
ASN 350.0063
ILE 360.0055
THR 370.0052
TYR 380.0048
GLN 390.0050
CYS 400.0040
MET 410.0046
GLU 420.0049
LEU 430.0044
ASN 440.0038
PHE 450.0026
TYR 460.0021
LYS 470.0010
ILE 480.0009
PRO 490.0021
ASP 500.0026
ASN 510.0038
LEU 520.0042
PRO 530.0050
PHE 540.0045
SER 550.0047
THR 560.0039
LYS 570.0034
ASN 580.0033
LEU 590.0028
ASP 600.0032
LEU 610.0027
SER 620.0035
PHE 630.0042
ASN 640.0034
PRO 650.0034
LEU 660.0025
ARG 670.0032
HIS 680.0027
LEU 690.0019
GLY 700.0021
SER 710.0022
TYR 720.0019
SER 730.0008
PHE 740.0009
PHE 750.0020
SER 760.0023
PHE 770.0023
PRO 780.0027
GLU 790.0028
LEU 800.0018
GLN 810.0016
VAL 820.0017
LEU 830.0014
ASP 840.0021
LEU 850.0022
SER 860.0031
ARG 870.0036
CYS 880.0031
GLU 890.0038
ILE 900.0032
GLN 910.0038
THR 920.0033
ILE 930.0026
GLU 940.0028
ASP 950.0029
GLY 960.0023
ALA 970.0017
TYR 980.0011
GLN 990.0019
SER 1000.0018
LEU 1010.0011
SER 1020.0015
HIS 1030.0010
LEU 1040.0002
SER 1050.0005
THR 1060.0014
LEU 1070.0014
ILE 1080.0019
LEU 1090.0022
THR 1100.0026
GLY 1110.0030
ASN 1120.0032
PRO 1130.0037
ILE 1140.0034
GLN 1150.0039
SER 1160.0036
LEU 1170.0032
ALA 1180.0032
LEU 1190.0031
GLY 1200.0027
ALA 1210.0024
PHE 1220.0020
SER 1230.0021
GLY 1240.0017
LEU 1250.0012
SER 1260.0013
SER 1270.0012
LEU 1280.0014
GLN 1290.0017
LYS 1300.0019
LEU 1310.0019
VAL 1320.0020
ALA 1330.0020
VAL 1340.0020
GLU 1350.0021
THR 1360.0022
ASN 1370.0019
LEU 1380.0018
ALA 1390.0015
SER 1400.0015
LEU 1410.0015
GLU 1420.0016
ASN 1430.0018
PHE 1440.0019
PRO 1450.0021
ILE 1460.0021
GLY 1470.0019
HIS 1480.0019
LEU 1490.0019
LYS 1500.0019
THR 1510.0020
LEU 1520.0023
LYS 1530.0024
GLU 1540.0022
LEU 1550.0020
ASN 1560.0020
VAL 1570.0016
ALA 1580.0016
HIS 1590.0015
ASN 1600.0012
LEU 1610.0009
ILE 1620.0010
GLN 1630.0008
SER 1640.0007
PHE 1650.0008
LYS 1660.0009
LEU 1670.0013
PRO 1680.0014
GLU 1690.0016
TYR 1700.0019
PHE 1710.0018
SER 1720.0021
ASN 1730.0022
LEU 1740.0021
THR 1750.0023
ASN 1760.0024
LEU 1770.0025
GLU 1780.0025
HIS 1790.0022
LEU 1800.0018
ASP 1810.0018
LEU 1820.0014
SER 1830.0017
SER 1840.0019
ASN 1850.0014
LYS 1860.0013
ILE 1870.0015
GLN 1880.0019
SER 1890.0016
ILE 1900.0012
TYR 1910.0016
CYS 1920.0016
THR 1930.0016
ASP 1940.0012
LEU 1950.0013
ARG 1960.0017
VAL 1970.0018
LEU 1980.0017
HIS 1990.0020
GLN 2000.0024
MET 2010.0024
PRO 2020.0026
LEU 2030.0029
LEU 2040.0025
ASN 2050.0025
LEU 2060.0021
SER 2070.0020
LEU 2080.0016
ASP 2090.0018
LEU 2100.0015
SER 2110.0021
LEU 2120.0025
ASN 2130.0021
PRO 2140.0025
MET 2150.0021
ASN 2160.0025
PHE 2170.0023
ILE 2180.0018
GLN 2190.0020
PRO 2200.0020
GLY 2210.0019
ALA 2220.0016
PHE 2230.0012
LYS 2240.0017
GLU 2250.0019
ILE 2260.0015
ARG 2270.0016
LEU 2280.0015
HIS 2290.0020
LYS 2300.0018
LEU 2310.0014
THR 2320.0020
LEU 2330.0020
ARG 2340.0028
ASN 2350.0033
ASN 2360.0028
PHE 2370.0034
ASP 2380.0043
SER 2390.0044
LEU 2400.0040
ASN 2410.0041
VAL 2420.0035
MET 2430.0030
LYS 2440.0029
THR 2450.0030
CYS 2460.0023
ILE 2470.0020
GLN 2480.0022
GLY 2490.0020
LEU 2500.0014
ALA 2510.0016
GLY 2520.0015
LEU 2530.0010
GLU 2540.0012
VAL 2550.0012
HIS 2560.0018
ARG 2570.0018
LEU 2580.0016
VAL 2590.0022
LEU 2600.0024
GLY 2610.0031
GLU 2620.0037
PHE 2630.0044
ARG 2640.0054
ASN 2650.0055
GLU 2660.0049
GLY 2670.0051
ASN 2680.0048
LEU 2690.0045
GLU 2700.0052
LYS 2710.0049
PHE 2720.0040
ASP 2730.0038
LYS 2740.0031
SER 2750.0032
ALA 2760.0032
LEU 2770.0023
GLU 2780.0022
GLY 2790.0020
LEU 2800.0014
CYS 2810.0014
ASN 2820.0014
LEU 2830.0009
THR 2840.0010
ILE 2850.0011
GLU 2860.0017
GLU 2870.0019
PHE 2880.0019
ARG 2890.0025
LEU 2900.0028
ALA 2910.0034
TYR 2920.0040
LEU 2930.0041
ASP 2940.0051
TYR 2950.0051
TYR 2960.0054
LEU 2970.0031
ASP 2980.0029
GLY 2990.0024
ILE 3000.0023
ILE 3010.0021
ASP 3020.0019
LEU 3030.0023
PHE 3040.0019
ASN 3050.0015
CYS 3060.0015
LEU 3070.0016
THR 3080.0016
ASN 3090.0017
VAL 3100.0017
SER 3110.0020
SER 3120.0023
PHE 3130.0023
SER 3140.0027
LEU 3150.0029
VAL 3160.0033
SER 3170.0037
VAL 3180.0032
THR 3190.0033
ILE 3200.0028
GLU 3210.0028
ARG 3220.0026
VAL 3230.0026
LYS 3240.0027
ASP 3250.0025
PHE 3260.0025
SER 3270.0026
TYR 3280.0024
ASN 3290.0025
PHE 3300.0023
GLY 3310.0023
TRP 3320.0022
GLN 3330.0024
HIS 3340.0026
LEU 3350.0027
GLU 3360.0029
LEU 3370.0026
VAL 3380.0030
ASN 3390.0034
CYS 3400.0030
LYS 3410.0032
PHE 3420.0031
GLY 3430.0033
GLN 3440.0036
PHE 3450.0036
PRO 3460.0033
THR 3470.0032
LEU 3480.0031
LYS 3490.0032
LEU 3500.0031
LYS 3510.0032
SER 3520.0027
LEU 3530.0027
LYS 3540.0028
ARG 3550.0030
LEU 3560.0029
THR 3570.0028
PHE 3580.0029
THR 3590.0029
SER 3600.0030
ASN 3610.0031
LYS 3620.0036
GLY 3630.0035
GLY 3640.0039
ASN 3650.0040
ALA 3660.0045
PHE 3670.0037
SER 3680.0039
GLU 3690.0039
VAL 3700.0036
ASP 3710.0038
LEU 3720.0031
PRO 3730.0031
SER 3740.0031
LEU 3750.0029
GLU 3760.0028
PHE 3770.0026
LEU 3780.0027
ASP 3790.0025
LEU 3800.0026
SER 3810.0025
ARG 3820.0027
ASN 3830.0033
GLY 3840.0035
LEU 3850.0037
SER 3860.0040
PHE 3870.0034
LYS 3880.0037
GLY 3890.0034
CYS 3900.0029
CYS 3910.0027
SER 3920.0028
GLN 3930.0031
SER 3940.0035
ASP 3950.0033
PHE 3960.0033
GLY 3970.0034
THR 3980.0031
ILE 3990.0029
SER 4000.0029
LEU 4010.0025
LYS 4020.0022
TYR 4030.0020
LEU 4040.0019
ASP 4050.0018
LEU 4060.0019
SER 4070.0017
PHE 4080.0024
ASN 4090.0029
GLY 4100.0037
VAL 4110.0035
ILE 4120.0027
THR 4130.0029
MET 4140.0025
SER 4150.0027
SER 4160.0025
ASN 4170.0018
PHE 4180.0020
LEU 4190.0024
GLY 4200.0028
LEU 4210.0024
GLU 4220.0021
GLN 4230.0023
LEU 4240.0019
GLU 4250.0018
HIS 4260.0016
LEU 4270.0014
ASP 4280.0015
PHE 4290.0017
GLN 4300.0021
HIS 4310.0027
SER 4320.0024
ASN 4330.0028
LEU 4340.0024
LYS 4350.0026
GLN 4360.0024
MET 4370.0018
SER 4380.0019
GLU 4390.0018
PHE 4400.0015
SER 4410.0015
VAL 4420.0016
PHE 4430.0015
LEU 4440.0016
SER 4450.0018
LEU 4460.0017
ARG 4470.0021
ASN 4480.0022
LEU 4490.0018
ILE 4500.0022
TYR 4510.0020
LEU 4520.0021
ASP 4530.0022
ILE 4540.0022
SER 4550.0026
HIS 4560.0028
THR 4570.0026
HIS 4580.0027
THR 4590.0023
ARG 4600.0023
VAL 4610.0021
ALA 4620.0022
PHE 4630.0021
ASN 4640.0023
GLY 4650.0022
ILE 4660.0020
PHE 4670.0021
ASN 4680.0021
GLY 4690.0021
LEU 4700.0022
SER 4710.0025
SER 4720.0025
LEU 4730.0024
GLU 4740.0026
VAL 4750.0026
LEU 4760.0026
LYS 4770.0028
MET 4780.0028
ALA 4790.0029
GLY 4800.0030
ASN 4810.0029
SER 4820.0026
PHE 4830.0025
GLN 4840.0025
GLU 4850.0026
ASN 4860.0026
PHE 4870.0027
LEU 4880.0026
PRO 4890.0027
ASP 4900.0028
ILE 4910.0027
PHE 4920.0027
THR 4930.0028
GLU 4940.0027
LEU 4950.0026
ARG 4960.0028
ASN 4970.0028
LEU 4980.0029
THR 4990.0030
PHE 5000.0031
LEU 5010.0031
ASP 5020.0032
LEU 5030.0032
SER 5040.0032
GLN 5050.0032
CYS 5060.0032
GLN 5070.0028
LEU 5080.0027
GLU 5090.0026
GLN 5100.0026
LEU 5110.0026
SER 5120.0026
PRO 5130.0024
THR 5140.0026
ALA 5150.0027
PHE 5160.0026
ASN 5170.0025
SER 5180.0026
LEU 5190.0027
SER 5200.0026
SER 5210.0028
LEU 5220.0031
GLN 5230.0032
VAL 5240.0032
LEU 5250.0030
ASN 5260.0031
MET 5270.0030
SER 5280.0031
HIS 5290.0033
ASN 5300.0031
ASN 5310.0029
PHE 5320.0026
PHE 5330.0024
SER 5340.0016
LEU 5350.0011
ASP 5360.0009
THR 5370.0010
PHE 5380.0011
PRO 5390.0018
TYR 5400.0019
LYS 5410.0018
CYS 5420.0019
LEU 5430.0022
ASN 5440.0024
SER 5450.0028
LEU 5460.0027
GLN 5470.0033
VAL 5480.0032
LEU 5490.0027
ASP 5500.0028
TYR 5510.0024
SER 5520.0027
LEU 5530.0032
ASN 5540.0030
HIS 5550.0029
ILE 5560.0019
MET 5570.0025
THR 5580.0022
SER 5590.0014
LYS 5600.0021
LYS 5610.0013
GLN 5620.0014
GLU 5630.0008
LEU 5640.0008
GLN 5650.0016
HIS 5660.0015
PHE 5670.0016
PRO 5680.0021
SER 5690.0026
SER 5700.0029
LEU 5710.0027
ALA 5720.0037
PHE 5730.0032
LEU 5740.0023
ASN 5750.0024
LEU 5760.0016
THR 5770.0021
GLN 5780.0031
ASN 5790.0028
ASP 5800.0035
PHE 5810.0029
ALA 5820.0050
CYS 5830.0053
THR 5840.0068
CYS 5850.0074
GLU 5860.0070
HIS 5870.0049
GLN 5880.0054
SER 5890.0046
PHE 5900.0029
LEU 5910.0034
GLN 5920.0042
TRP 5930.0032
ILE 5940.0021
LYS 5950.0033
ASP 5960.0042
GLN 5970.0031
ARG 5980.0024
GLN 5990.0036
LEU 6000.0031
LEU 6010.0019
VAL 6020.0027
GLU 6030.0021
VAL 6040.0007
GLU 6050.0008
ARG 6060.0021
MET 6070.0016
GLU 6080.0030
CYS 6090.0042
ALA 6100.0055
THR 6110.0066
PRO 6120.0080
SER 6130.0090
ASP 6140.0090
LYS 6150.0070
GLN 6160.0066
GLY 6170.0051
MET 6180.0042
PRO 6190.0025
VAL 6200.0027
LEU 6210.0026
SER 6220.0038
LEU 6230.0051
ASN 6240.0071
ILE 6250.0074
THR 6260.0095
CYS 6270.0117
GLU 10.0072
ALA 20.0085
ALA 30.0087
ALA 40.0050
LYS 50.0023
MET 60.0041
GLN 70.0058
ARG 80.0045
LEU 90.0030
VAL 100.0058
LEU 110.0076
LEU 120.0071
LEU 130.0059
ALA 140.0079
ILE 150.0094
SER 160.0075
LEU 170.0061
LEU 180.0061
LEU 190.0062
TYR 200.0052
GLN 210.0032
ASP 220.0026
LEU 230.0032
PRO 240.0025
VAL 250.0030
ARG 260.0036
SER 270.0033
GLU 280.0043
PHE 290.0044
GLU 300.0034
LEU 310.0034
ASP 320.0043
ARG 330.0039
ILE 340.0038
CYS 350.0048
GLY 360.0037
TYR 370.0031
GLY 380.0036
THR 390.0042
ALA 400.0046
ARG 410.0046
CYS 420.0059
ARG 430.0066
LYS 440.0082
LYS 450.0081
CYS 460.0068
ARG 470.0057
SER 480.0056
GLN 490.0046
GLU 500.0054
TYR 510.0068
ARG 520.0080
ILE 530.0084
GLY 540.0093
ARG 550.0095
CYS 560.0081
PRO 570.0085
ASN 580.0087
THR 590.0101
TYR 600.0090
ALA 610.0080
CYS 620.0069
CYS 630.0062
LEU 640.0055
ARG 650.0046
LYS 660.0046
TRP 670.0042
ASP 680.0037
GLU 690.0042
SER 700.0033
LEU 710.0035
LEU 720.0041
ASN 730.0035
ARG 740.0031
THR 750.0039
LYS 760.0027
PRO 770.0027
GLU 780.0019
ALA 790.0025
ALA 800.0035
ALA 810.0068
LYS 820.0078
LYS 830.0115
GLU 840.0103
MET 850.0144
ASN 860.0123
LEU 870.0111
SER 880.0109
VAL 890.0100
GLY 900.0098
LEU 910.0092
GLY 920.0090
GLY 930.0101
GLY 940.0111
SER 950.0111
ASN 960.0105
LEU 970.0103
SER 980.0108
VAL 990.0107
GLY 1000.0113
LEU 1010.0063
GLY 1020.0141
GLU 1030.0294
ILE 1040.0426
GLY 1050.0585
GLY 1060.0785
GLY 1070.0587
SER 1080.0435
LYS 1090.0230
LEU 1100.0090
LEU 1110.0127
ASP 1120.0129
ILE 1130.0126
ASN 1140.0128
LEU 1150.0125
GLY 1160.0138
ARG 1170.0170
GLY 1180.0131
GLY 1190.0115
GLY 1200.0087
SER 1210.0087
MET 1220.0080
VAL 1230.0086
ASP 1240.0083
LEU 1250.0089
THR 1260.0087
PHE 1270.0093
GLY 1280.0095
GLY 1290.0083
VAL 1300.0098
GLY 1310.0107
GLY 1320.0138
GLY 1330.0148
SER 1340.0159
THR 1350.0162
PHE 1360.0157
THR 1370.0178
PHE 1380.0147
PHE 1390.0172
PRO 1400.0141
LEU 1410.0153
VAL 1420.0141
ILE 1430.0141
GLY 1440.0147
GLY 1450.0130
GLY 1460.0166
SER 1470.0172
ASP 1480.0158
ALA 1490.0164
MET 1500.0150
TYR 1510.0160
LEU 1520.0155
GLY 1530.0183
PHE 1540.0185
ALA 1550.0216
ALA 1560.0186
GLY 1570.0191
GLY 1580.0185
GLY 1590.0172
SER 1600.0151
ALA 1610.0150
GLY 1620.0106
GLY 1630.0079
GLU 1640.0069
ASN 1650.0077
HIS 1660.0068
VAL 1670.0070
ALA 1680.0065
PHE 1690.0065
GLY 1700.0071
PRO 1710.0125
GLY 1720.0112
PRO 1730.0101
GLY 1740.0081
VAL 1750.0074
ASP 1760.0063
LEU 1770.0080
THR 1780.0081
PHE 1790.0102
GLY 1800.0105
GLY 1810.0101
VAL 1820.0108
GLN 1830.0084
PHE 1840.0084
ALA 1850.0065
MET 1860.0034
VAL 1870.0092
ASN 1880.0168
ASN 1890.0255
GLY 1900.0340
PRO 1910.0570
GLY 1920.0893
PRO 1930.0845
GLY 1940.0425
GLU 1950.0092
SER 1960.0710
PHE 1970.0637
THR 1980.0384
ALA 1990.0425
GLN 2000.0282
PRO 2010.0316
ALA 2020.0319
ASP 2030.0311
MET 2040.0197
GLN 2050.0379
ALA 2060.0382
GLY 2070.0337
ILE 2080.0255
LYS 2090.0282
GLY 2100.0271
PRO 2110.0177
GLY 2120.0399
PRO 2130.0603
GLY 2140.0321
GLY 2150.0178
SER 2160.0325
ILE 2170.0356
GLN 2180.0428
VAL 2190.0398
ILE 2200.0517
ASN 2210.0406
GLY 2220.0358
SER 2230.0314
THR 2240.0289
ILE 2250.0290
GLY 2260.0202
THR 2270.0129
GLY 2280.0046
SER 2290.0122
LYS 2300.0088
LYS 2310.0137
THR 2320.0123
ILE 2330.0155
LEU 2340.0144
ILE 2350.0172
TYR 2360.0171
SER 2370.0155
ILE 2380.0143
ILE 2390.0122
GLY 2400.0112
VAL 2410.0096
LYS 2420.0082
LYS 2430.0089
GLY 2440.0112
THR 2450.0112
LEU 2460.0136
ALA 2470.0128
TRP 2480.0137
ALA 2490.0127
ARG 2500.0137
THR 2510.0138
GLY 2520.0113
PHE 2530.0132
SER 2540.0116
PRO 2550.0133
ALA 2560.0186
LYS 2570.0219
LYS 2580.0230
LEU 2590.0206
ASN 2600.0359
ALA 2610.0647
GLY 2620.0413
VAL 2630.0320
VAL 2640.0188
ARG 2650.0113
VAL 2660.0192
PHE 2670.0188
PHE 2680.0168
LEU 2690.0170
ASN 2700.0158
GLN 2710.0114
LYS 2720.0084
LYS 2730.0116
ALA 2740.0133
LYS 2750.0105
ASP 2760.0129
VAL 2770.0165
LEU 2780.0130
ARG 2790.0125
LYS 2800.0177
THR 2810.0184
SER 2820.0160
ARG 2830.0154
PRO 2840.0290
MET 2850.0456
VAL 2860.0384
ASP 2870.0374
LEU 2880.0302
THR 2890.0292
PHE 2900.0144
GLY 2910.0336
GLY 2920.0269

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.