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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 49  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0461
GLU 270.0204
PRO 280.0237
CYS 290.0187
VAL 300.0195
GLU 310.0156
VAL 320.0174
VAL 330.0138
PRO 340.0094
ASN 350.0057
ILE 360.0084
THR 370.0103
TYR 380.0110
GLN 390.0153
CYS 400.0151
MET 410.0183
GLU 420.0220
LEU 430.0229
ASN 440.0231
PHE 450.0188
TYR 460.0194
LYS 470.0160
ILE 480.0122
PRO 490.0138
ASP 500.0155
ASN 510.0160
LEU 520.0109
PRO 530.0088
PHE 540.0112
SER 550.0091
THR 560.0060
LYS 570.0089
ASN 580.0091
LEU 590.0069
ASP 600.0103
LEU 610.0103
SER 620.0134
PHE 630.0169
ASN 640.0158
PRO 650.0162
LEU 660.0122
ARG 670.0105
HIS 680.0095
LEU 690.0080
GLY 700.0102
SER 710.0110
TYR 720.0120
SER 730.0104
PHE 740.0091
PHE 750.0129
SER 760.0126
PHE 770.0094
PRO 780.0130
GLU 790.0118
LEU 800.0087
GLN 810.0111
VAL 820.0094
LEU 830.0067
ASP 840.0082
LEU 850.0073
SER 860.0106
ARG 870.0115
CYS 880.0098
GLU 890.0105
ILE 900.0075
GLN 910.0071
THR 920.0070
ILE 930.0058
GLU 940.0075
ASP 950.0084
GLY 960.0088
ALA 970.0080
TYR 980.0078
GLN 990.0111
SER 1000.0120
LEU 1010.0102
SER 1020.0133
HIS 1030.0134
LEU 1040.0106
SER 1050.0119
THR 1060.0101
LEU 1070.0084
ILE 1080.0083
LEU 1090.0073
THR 1100.0090
GLY 1110.0091
ASN 1120.0075
PRO 1130.0079
ILE 1140.0058
GLN 1150.0055
SER 1160.0045
LEU 1170.0052
ALA 1180.0052
LEU 1190.0052
GLY 1200.0064
ALA 1210.0053
PHE 1220.0068
SER 1230.0087
GLY 1240.0101
LEU 1250.0096
SER 1260.0122
SER 1270.0119
LEU 1280.0102
GLN 1290.0111
LYS 1300.0101
LEU 1310.0085
VAL 1320.0085
ALA 1330.0082
VAL 1340.0085
GLU 1350.0084
THR 1360.0081
ASN 1370.0075
LEU 1380.0075
ALA 1390.0083
SER 1400.0082
LEU 1410.0077
GLU 1420.0082
ASN 1430.0078
PHE 1440.0071
PRO 1450.0068
ILE 1460.0069
GLY 1470.0061
HIS 1480.0071
LEU 1490.0077
LYS 1500.0079
THR 1510.0092
LEU 1520.0084
LYS 1530.0091
GLU 1540.0089
LEU 1550.0082
ASN 1560.0083
VAL 1570.0074
ALA 1580.0073
HIS 1590.0073
ASN 1600.0072
LEU 1610.0070
ILE 1620.0068
GLN 1630.0068
SER 1640.0071
PHE 1650.0069
LYS 1660.0078
LEU 1670.0075
PRO 1680.0081
GLU 1690.0087
TYR 1700.0080
PHE 1710.0070
SER 1720.0070
ASN 1730.0068
LEU 1740.0068
THR 1750.0070
ASN 1760.0077
LEU 1770.0075
GLU 1780.0078
HIS 1790.0079
LEU 1800.0076
ASP 1810.0077
LEU 1820.0067
SER 1830.0070
SER 1840.0075
ASN 1850.0070
LYS 1860.0066
ILE 1870.0066
GLN 1880.0062
SER 1890.0057
ILE 1900.0058
TYR 1910.0061
CYS 1920.0082
THR 1930.0088
ASP 1940.0076
LEU 1950.0078
ARG 1960.0093
VAL 1970.0085
LEU 1980.0078
HIS 1990.0093
GLN 2000.0097
MET 2010.0083
PRO 2020.0087
LEU 2030.0081
LEU 2040.0074
ASN 2050.0068
LEU 2060.0066
SER 2070.0066
LEU 2080.0066
ASP 2090.0070
LEU 2100.0069
SER 2110.0078
LEU 2120.0083
ASN 2130.0077
PRO 2140.0082
MET 2150.0069
ASN 2160.0071
PHE 2170.0059
ILE 2180.0059
GLN 2190.0065
PRO 2200.0081
GLY 2210.0087
ALA 2220.0072
PHE 2230.0074
LYS 2240.0091
GLU 2250.0093
ILE 2260.0076
ARG 2270.0069
LEU 2280.0063
HIS 2290.0062
LYS 2300.0064
LEU 2310.0066
THR 2320.0070
LEU 2330.0078
ARG 2340.0092
ASN 2350.0105
ASN 2360.0095
PHE 2370.0119
ASP 2380.0145
SER 2390.0149
LEU 2400.0144
ASN 2410.0144
VAL 2420.0117
MET 2430.0109
LYS 2440.0115
THR 2450.0104
CYS 2460.0086
ILE 2470.0090
GLN 2480.0094
GLY 2490.0076
LEU 2500.0075
ALA 2510.0091
GLY 2520.0085
LEU 2530.0071
GLU 2540.0073
VAL 2550.0064
HIS 2560.0064
ARG 2570.0062
LEU 2580.0069
VAL 2590.0076
LEU 2600.0086
GLY 2610.0098
GLU 2620.0110
PHE 2630.0126
ARG 2640.0151
ASN 2650.0162
GLU 2660.0150
GLY 2670.0168
ASN 2680.0155
LEU 2690.0154
GLU 2700.0179
LYS 2710.0173
PHE 2720.0152
ASP 2730.0160
LYS 2740.0154
SER 2750.0149
ALA 2760.0133
LEU 2770.0116
GLU 2780.0123
GLY 2790.0106
LEU 2800.0097
CYS 2810.0109
ASN 2820.0099
LEU 2830.0082
THR 2840.0079
ILE 2850.0072
GLU 2860.0068
GLU 2870.0063
PHE 2880.0071
ARG 2890.0076
LEU 2900.0086
ALA 2910.0089
TYR 2920.0106
LEU 2930.0123
ASP 2940.0149
TYR 2950.0155
TYR 2960.0147
LEU 2970.0127
ASP 2980.0135
GLY 2990.0125
ILE 3000.0114
ILE 3010.0126
ASP 3020.0134
LEU 3030.0123
PHE 3040.0107
ASN 3050.0114
CYS 3060.0105
LEU 3070.0088
THR 3080.0087
ASN 3090.0079
VAL 3100.0070
SER 3110.0059
SER 3120.0057
PHE 3130.0064
SER 3140.0065
LEU 3150.0075
VAL 3160.0078
SER 3170.0091
VAL 3180.0094
THR 3190.0100
ILE 3200.0096
GLU 3210.0099
ARG 3220.0093
VAL 3230.0080
LYS 3240.0087
ASP 3250.0093
PHE 3260.0078
SER 3270.0084
TYR 3280.0092
ASN 3290.0089
PHE 3300.0083
GLY 3310.0078
TRP 3320.0064
GLN 3330.0056
HIS 3340.0052
LEU 3350.0055
GLU 3360.0055
LEU 3370.0054
VAL 3380.0059
ASN 3390.0072
CYS 3400.0074
LYS 3410.0077
PHE 3420.0062
GLY 3430.0059
GLN 3440.0048
PHE 3450.0044
PRO 3460.0049
THR 3470.0061
LEU 3480.0060
LYS 3490.0066
LEU 3500.0065
LYS 3510.0069
SER 3520.0057
LEU 3530.0053
LYS 3540.0049
ARG 3550.0049
LEU 3560.0050
THR 3570.0041
PHE 3580.0042
THR 3590.0045
SER 3600.0050
ASN 3610.0049
LYS 3620.0068
GLY 3630.0053
GLY 3640.0037
ASN 3650.0040
ALA 3660.0039
PHE 3670.0044
SER 3680.0045
GLU 3690.0046
VAL 3700.0049
ASP 3710.0052
LEU 3720.0052
PRO 3730.0054
SER 3740.0055
LEU 3750.0051
GLU 3760.0049
PHE 3770.0042
LEU 3780.0042
ASP 3790.0042
LEU 3800.0042
SER 3810.0043
ARG 3820.0043
ASN 3830.0043
GLY 3840.0043
LEU 3850.0042
SER 3860.0041
PHE 3870.0041
LYS 3880.0039
GLY 3890.0035
CYS 3900.0035
CYS 3910.0035
SER 3920.0040
GLN 3930.0043
SER 3940.0044
ASP 3950.0044
PHE 3960.0047
GLY 3970.0048
THR 3980.0049
ILE 3990.0048
SER 4000.0050
LEU 4010.0047
LYS 4020.0044
TYR 4030.0043
LEU 4040.0041
ASP 4050.0041
LEU 4060.0041
SER 4070.0040
PHE 4080.0039
ASN 4090.0040
GLY 4100.0039
VAL 4110.0038
ILE 4120.0034
THR 4130.0029
MET 4140.0025
SER 4150.0026
SER 4160.0027
ASN 4170.0023
PHE 4180.0031
LEU 4190.0032
GLY 4200.0040
LEU 4210.0041
GLU 4220.0037
GLN 4230.0045
LEU 4240.0042
GLU 4250.0044
HIS 4260.0042
LEU 4270.0036
ASP 4280.0036
PHE 4290.0032
GLN 4300.0033
HIS 4310.0032
SER 4320.0034
ASN 4330.0027
LEU 4340.0024
LYS 4350.0020
GLN 4360.0016
MET 4370.0019
SER 4380.0019
GLU 4390.0016
PHE 4400.0015
SER 4410.0018
VAL 4420.0019
PHE 4430.0026
LEU 4440.0021
SER 4450.0025
LEU 4460.0033
ARG 4470.0031
ASN 4480.0042
LEU 4490.0041
ILE 4500.0050
TYR 4510.0048
LEU 4520.0037
ASP 4530.0040
ILE 4540.0031
SER 4550.0041
HIS 4560.0037
THR 4570.0037
HIS 4580.0035
THR 4590.0033
ARG 4600.0036
VAL 4610.0037
ALA 4620.0041
PHE 4630.0037
ASN 4640.0045
GLY 4650.0035
ILE 4660.0033
PHE 4670.0041
ASN 4680.0036
GLY 4690.0033
LEU 4700.0042
SER 4710.0045
SER 4720.0048
LEU 4730.0050
GLU 4740.0060
VAL 4750.0061
LEU 4760.0056
LYS 4770.0057
MET 4780.0054
ALA 4790.0064
GLY 4800.0063
ASN 4810.0054
SER 4820.0071
PHE 4830.0070
GLN 4840.0071
GLU 4850.0088
ASN 4860.0091
PHE 4870.0089
LEU 4880.0083
PRO 4890.0078
ASP 4900.0071
ILE 4910.0066
PHE 4920.0066
THR 4930.0064
GLU 4940.0057
LEU 4950.0060
ARG 4960.0062
ASN 4970.0063
LEU 4980.0067
THR 4990.0071
PHE 5000.0074
LEU 5010.0076
ASP 5020.0080
LEU 5030.0083
SER 5040.0090
GLN 5050.0093
CYS 5060.0088
GLN 5070.0104
LEU 5080.0101
GLU 5090.0107
GLN 5100.0102
LEU 5110.0095
SER 5120.0088
PRO 5130.0081
THR 5140.0080
ALA 5150.0083
PHE 5160.0077
ASN 5170.0074
SER 5180.0074
LEU 5190.0073
SER 5200.0068
SER 5210.0068
LEU 5220.0074
GLN 5230.0073
VAL 5240.0080
LEU 5250.0085
ASN 5260.0092
MET 5270.0100
SER 5280.0107
HIS 5290.0119
ASN 5300.0119
ASN 5310.0122
PHE 5320.0115
PHE 5330.0105
SER 5340.0088
LEU 5350.0072
ASP 5360.0079
THR 5370.0058
PHE 5380.0071
PRO 5390.0083
TYR 5400.0068
LYS 5410.0058
CYS 5420.0065
LEU 5430.0064
ASN 5440.0056
SER 5450.0060
LEU 5460.0062
GLN 5470.0061
VAL 5480.0074
LEU 5490.0076
ASP 5500.0090
TYR 5510.0089
SER 5520.0100
LEU 5530.0118
ASN 5540.0114
HIS 5550.0108
ILE 5560.0085
MET 5570.0068
THR 5580.0069
SER 5590.0072
LYS 5600.0109
LYS 5610.0113
GLN 5620.0098
GLU 5630.0079
LEU 5640.0051
GLN 5650.0046
HIS 5660.0036
PHE 5670.0032
PRO 5680.0030
SER 5690.0016
SER 5700.0029
LEU 5710.0035
ALA 5720.0055
PHE 5730.0069
LEU 5740.0055
ASN 5750.0078
LEU 5760.0065
THR 5770.0091
GLN 5780.0105
ASN 5790.0085
ASP 5800.0078
PHE 5810.0043
ALA 5820.0056
CYS 5830.0042
THR 5840.0094
CYS 5850.0140
GLU 5860.0152
HIS 5870.0101
GLN 5880.0111
SER 5890.0112
PHE 5900.0063
LEU 5910.0056
GLN 5920.0093
TRP 5930.0069
ILE 5940.0046
LYS 5950.0093
ASP 5960.0099
GLN 5970.0073
ARG 5980.0085
GLN 5990.0100
LEU 6000.0070
LEU 6010.0071
VAL 6020.0107
GLU 6030.0127
VAL 6040.0105
GLU 6050.0127
ARG 6060.0120
MET 6070.0079
GLU 6080.0070
CYS 6090.0030
ALA 6100.0060
THR 6110.0063
PRO 6120.0045
SER 6130.0038
ASP 6140.0014
LYS 6150.0030
GLN 6160.0049
GLY 6170.0086
MET 6180.0081
PRO 6190.0093
VAL 6200.0059
LEU 6210.0099
SER 6220.0133
LEU 6230.0104
ASN 6240.0143
ILE 6250.0153
THR 6260.0197
CYS 6270.0213
GLU 10.0146
ALA 20.0127
ALA 30.0154
ALA 40.0146
LYS 50.0090
MET 60.0086
GLN 70.0121
ARG 80.0123
LEU 90.0094
VAL 100.0103
LEU 110.0124
LEU 120.0126
LEU 130.0111
ALA 140.0123
ILE 150.0148
SER 160.0128
LEU 170.0112
LEU 180.0094
LEU 190.0100
TYR 200.0104
GLN 210.0065
ASP 220.0044
LEU 230.0052
PRO 240.0057
VAL 250.0077
ARG 260.0046
SER 270.0047
GLU 280.0060
PHE 290.0076
GLU 300.0067
LEU 310.0059
ASP 320.0071
ARG 330.0070
ILE 340.0063
CYS 350.0071
GLY 360.0055
TYR 370.0045
GLY 380.0048
THR 390.0058
ALA 400.0065
ARG 410.0070
CYS 420.0099
ARG 430.0113
LYS 440.0146
LYS 450.0134
CYS 460.0081
ARG 470.0093
SER 480.0105
GLN 490.0096
GLU 500.0071
TYR 510.0066
ARG 520.0066
ILE 530.0066
GLY 540.0104
ARG 550.0138
CYS 560.0133
PRO 570.0168
ASN 580.0178
THR 590.0188
TYR 600.0157
ALA 610.0108
CYS 620.0084
CYS 630.0068
LEU 640.0051
ARG 650.0063
LYS 660.0106
TRP 670.0109
ASP 680.0100
GLU 690.0111
SER 700.0099
LEU 710.0106
LEU 720.0124
ASN 730.0114
ARG 740.0102
THR 750.0121
LYS 760.0118
PRO 770.0111
GLU 780.0087
ALA 790.0099
ALA 800.0116
ALA 810.0041
LYS 820.0031
LYS 830.0029
GLU 840.0026
MET 850.0026
ASN 860.0011
LEU 870.0016
SER 880.0026
VAL 890.0021
GLY 900.0048
LEU 910.0047
GLY 920.0085
GLY 930.0135
GLY 940.0157
SER 950.0122
ASN 960.0068
LEU 970.0048
SER 980.0043
VAL 990.0037
GLY 1000.0040
LEU 1010.0031
GLY 1020.0043
GLU 1030.0066
ILE 1040.0121
GLY 1050.0170
GLY 1060.0290
GLY 1070.0231
SER 1080.0176
LYS 1090.0090
LEU 1100.0047
LEU 1110.0032
ASP 1120.0062
ILE 1130.0071
ASN 1140.0103
LEU 1150.0111
GLY 1160.0201
ARG 1170.0277
GLY 1180.0203
GLY 1190.0155
GLY 1200.0107
SER 1210.0053
MET 1220.0074
VAL 1230.0060
ASP 1240.0073
LEU 1250.0065
THR 1260.0072
PHE 1270.0083
GLY 1280.0080
GLY 1290.0106
VAL 1300.0112
GLY 1310.0137
GLY 1320.0149
GLY 1330.0162
SER 1340.0160
THR 1350.0168
PHE 1360.0159
THR 1370.0152
PHE 1380.0130
PHE 1390.0127
PRO 1400.0106
LEU 1410.0134
VAL 1420.0141
ILE 1430.0165
GLY 1440.0218
GLY 1450.0243
GLY 1460.0224
SER 1470.0175
ASP 1480.0147
ALA 1490.0125
MET 1500.0117
TYR 1510.0113
LEU 1520.0110
GLY 1530.0137
PHE 1540.0149
ALA 1550.0174
ALA 1560.0174
GLY 1570.0188
GLY 1580.0187
GLY 1590.0191
SER 1600.0184
ALA 1610.0168
GLY 1620.0153
GLY 1630.0139
GLU 1640.0119
ASN 1650.0117
HIS 1660.0095
VAL 1670.0093
ALA 1680.0089
PHE 1690.0081
GLY 1700.0088
PRO 1710.0196
GLY 1720.0175
PRO 1730.0161
GLY 1740.0118
VAL 1750.0099
ASP 1760.0091
LEU 1770.0109
THR 1780.0126
PHE 1790.0148
GLY 1800.0167
GLY 1810.0179
VAL 1820.0169
GLN 1830.0135
PHE 1840.0118
ALA 1850.0091
MET 1860.0053
VAL 1870.0092
ASN 1880.0167
ASN 1890.0232
GLY 1900.0296
PRO 1910.0332
GLY 1920.0077
PRO 1930.0216
GLY 1940.0296
GLU 1950.0153
SER 1960.0080
PHE 1970.0133
THR 1980.0143
ALA 1990.0236
GLN 2000.0260
PRO 2010.0135
ALA 2020.0071
ASP 2030.0147
MET 2040.0251
GLN 2050.0288
ALA 2060.0356
GLY 2070.0221
ILE 2080.0196
LYS 2090.0143
GLY 2100.0147
PRO 2110.0148
GLY 2120.0236
PRO 2130.0271
GLY 2140.0073
GLY 2150.0247
SER 2160.0461
ILE 2170.0430
GLN 2180.0099
VAL 2190.0161
ILE 2200.0419
ASN 2210.0307
GLY 2220.0249
SER 2230.0267
THR 2240.0231
ILE 2250.0173
GLY 2260.0128
THR 2270.0163
GLY 2280.0178
SER 2290.0223
LYS 2300.0199
LYS 2310.0178
THR 2320.0167
ILE 2330.0173
LEU 2340.0150
ILE 2350.0179
TYR 2360.0147
SER 2370.0140
ILE 2380.0139
ILE 2390.0127
GLY 2400.0133
VAL 2410.0121
LYS 2420.0103
LYS 2430.0099
GLY 2440.0118
THR 2450.0125
LEU 2460.0152
ALA 2470.0156
TRP 2480.0139
ALA 2490.0148
ARG 2500.0133
THR 2510.0176
GLY 2520.0167
PHE 2530.0179
SER 2540.0176
PRO 2550.0183
ALA 2560.0222
LYS 2570.0222
LYS 2580.0231
LEU 2590.0241
ASN 2600.0264
ALA 2610.0210
GLY 2620.0181
VAL 2630.0204
VAL 2640.0168
ARG 2650.0199
VAL 2660.0191
PHE 2670.0160
PHE 2680.0136
LEU 2690.0121
ASN 2700.0137
GLN 2710.0057
LYS 2720.0040
LYS 2730.0056
ALA 2740.0050
LYS 2750.0037
ASP 2760.0068
VAL 2770.0075
LEU 2780.0056
ARG 2790.0087
LYS 2800.0117
THR 2810.0164
SER 2820.0284
ARG 2830.0223
PRO 2840.0370
MET 2850.0459
VAL 2860.0371
ASP 2870.0412
LEU 2880.0331
THR 2890.0357
PHE 2900.0190
GLY 2910.0330
GLY 2920.0231

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.