CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 51  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0636
GLU 270.0092
PRO 280.0100
CYS 290.0084
VAL 300.0105
GLU 310.0105
VAL 320.0116
VAL 330.0109
PRO 340.0096
ASN 350.0064
ILE 360.0069
THR 370.0077
TYR 380.0068
GLN 390.0076
CYS 400.0056
MET 410.0063
GLU 420.0061
LEU 430.0062
ASN 440.0049
PHE 450.0036
TYR 460.0035
LYS 470.0030
ILE 480.0020
PRO 490.0033
ASP 500.0045
ASN 510.0059
LEU 520.0044
PRO 530.0035
PHE 540.0018
SER 550.0026
THR 560.0036
LYS 570.0054
ASN 580.0061
LEU 590.0045
ASP 600.0052
LEU 610.0033
SER 620.0046
PHE 630.0043
ASN 640.0025
PRO 650.0013
LEU 660.0016
ARG 670.0027
HIS 680.0036
LEU 690.0040
GLY 700.0047
SER 710.0053
TYR 720.0053
SER 730.0038
PHE 740.0034
PHE 750.0042
SER 760.0030
PHE 770.0028
PRO 780.0044
GLU 790.0044
LEU 800.0046
GLN 810.0064
VAL 820.0062
LEU 830.0051
ASP 840.0052
LEU 850.0044
SER 860.0052
ARG 870.0042
CYS 880.0032
GLU 890.0033
ILE 900.0038
GLN 910.0046
THR 920.0048
ILE 930.0051
GLU 940.0056
ASP 950.0063
GLY 960.0060
ALA 970.0053
TYR 980.0055
GLN 990.0064
SER 1000.0057
LEU 1010.0057
SER 1020.0070
HIS 1030.0068
LEU 1040.0063
SER 1050.0068
THR 1060.0063
LEU 1070.0061
ILE 1080.0058
LEU 1090.0055
THR 1100.0055
GLY 1110.0051
ASN 1120.0047
PRO 1130.0049
ILE 1140.0053
GLN 1150.0055
SER 1160.0059
LEU 1170.0056
ALA 1180.0059
LEU 1190.0064
GLY 1200.0063
ALA 1210.0059
PHE 1220.0063
SER 1230.0068
GLY 1240.0067
LEU 1250.0066
SER 1260.0074
SER 1270.0069
LEU 1280.0063
GLN 1290.0062
LYS 1300.0057
LEU 1310.0051
VAL 1320.0054
ALA 1330.0053
VAL 1340.0052
GLU 1350.0052
THR 1360.0052
ASN 1370.0053
LEU 1380.0050
ALA 1390.0046
SER 1400.0044
LEU 1410.0044
GLU 1420.0046
ASN 1430.0049
PHE 1440.0052
PRO 1450.0056
ILE 1460.0057
GLY 1470.0055
HIS 1480.0058
LEU 1490.0058
LYS 1500.0059
THR 1510.0060
LEU 1520.0047
LYS 1530.0047
GLU 1540.0046
LEU 1550.0044
ASN 1560.0043
VAL 1570.0044
ALA 1580.0044
HIS 1590.0045
ASN 1600.0044
LEU 1610.0043
ILE 1620.0040
GLN 1630.0036
SER 1640.0032
PHE 1650.0032
LYS 1660.0029
LEU 1670.0033
PRO 1680.0035
GLU 1690.0033
TYR 1700.0040
PHE 1710.0039
SER 1720.0037
ASN 1730.0041
LEU 1740.0043
THR 1750.0043
ASN 1760.0047
LEU 1770.0035
GLU 1780.0036
HIS 1790.0037
LEU 1800.0035
ASP 1810.0036
LEU 1820.0035
SER 1830.0038
SER 1840.0041
ASN 1850.0038
LYS 1860.0037
ILE 1870.0036
GLN 1880.0034
SER 1890.0031
ILE 1900.0029
TYR 1910.0026
CYS 1920.0020
THR 1930.0020
ASP 1940.0026
LEU 1950.0025
ARG 1960.0021
VAL 1970.0023
LEU 1980.0025
HIS 1990.0020
GLN 2000.0019
MET 2010.0025
PRO 2020.0020
LEU 2030.0022
LEU 2040.0023
ASN 2050.0026
LEU 2060.0026
SER 2070.0026
LEU 2080.0027
ASP 2090.0030
LEU 2100.0030
SER 2110.0034
LEU 2120.0038
ASN 2130.0037
PRO 2140.0039
MET 2150.0036
ASN 2160.0036
PHE 2170.0034
ILE 2180.0031
GLN 2190.0027
PRO 2200.0027
GLY 2210.0025
ALA 2220.0026
PHE 2230.0027
LYS 2240.0027
GLU 2250.0027
ILE 2260.0027
ARG 2270.0024
LEU 2280.0025
HIS 2290.0024
LYS 2300.0025
LEU 2310.0026
THR 2320.0028
LEU 2330.0032
ARG 2340.0033
ASN 2350.0037
ASN 2360.0039
PHE 2370.0046
ASP 2380.0052
SER 2390.0052
LEU 2400.0050
ASN 2410.0051
VAL 2420.0047
MET 2430.0043
LYS 2440.0042
THR 2450.0041
CYS 2460.0038
ILE 2470.0037
GLN 2480.0036
GLY 2490.0035
LEU 2500.0033
ALA 2510.0031
GLY 2520.0030
LEU 2530.0029
GLU 2540.0026
VAL 2550.0025
HIS 2560.0024
ARG 2570.0023
LEU 2580.0026
VAL 2590.0027
LEU 2600.0031
GLY 2610.0033
GLU 2620.0035
PHE 2630.0038
ARG 2640.0043
ASN 2650.0046
GLU 2660.0044
GLY 2670.0051
ASN 2680.0047
LEU 2690.0048
GLU 2700.0055
LYS 2710.0053
PHE 2720.0047
ASP 2730.0050
LYS 2740.0047
SER 2750.0046
ALA 2760.0042
LEU 2770.0038
GLU 2780.0040
GLY 2790.0039
LEU 2800.0033
CYS 2810.0034
ASN 2820.0033
LEU 2830.0030
THR 2840.0026
ILE 2850.0025
GLU 2860.0024
GLU 2870.0022
PHE 2880.0023
ARG 2890.0024
LEU 2900.0026
ALA 2910.0026
TYR 2920.0034
LEU 2930.0032
ASP 2940.0035
TYR 2950.0038
TYR 2960.0042
LEU 2970.0038
ASP 2980.0042
GLY 2990.0041
ILE 3000.0038
ILE 3010.0043
ASP 3020.0046
LEU 3030.0041
PHE 3040.0035
ASN 3050.0039
CYS 3060.0036
LEU 3070.0029
THR 3080.0032
ASN 3090.0029
VAL 3100.0024
SER 3110.0024
SER 3120.0024
PHE 3130.0023
SER 3140.0023
LEU 3150.0022
VAL 3160.0024
SER 3170.0027
VAL 3180.0028
THR 3190.0030
ILE 3200.0032
GLU 3210.0034
ARG 3220.0035
VAL 3230.0032
LYS 3240.0040
ASP 3250.0040
PHE 3260.0036
SER 3270.0041
TYR 3280.0043
ASN 3290.0044
PHE 3300.0036
GLY 3310.0036
TRP 3320.0030
GLN 3330.0035
HIS 3340.0034
LEU 3350.0032
GLU 3360.0031
LEU 3370.0033
VAL 3380.0035
ASN 3390.0035
CYS 3400.0031
LYS 3410.0031
PHE 3420.0040
GLY 3430.0043
GLN 3440.0037
PHE 3450.0035
PRO 3460.0039
THR 3470.0033
LEU 3480.0035
LYS 3490.0042
LEU 3500.0040
LYS 3510.0048
SER 3520.0043
LEU 3530.0043
LYS 3540.0047
ARG 3550.0047
LEU 3560.0045
THR 3570.0041
PHE 3580.0038
THR 3590.0038
SER 3600.0036
ASN 3610.0034
LYS 3620.0049
GLY 3630.0065
GLY 3640.0064
ASN 3650.0044
ALA 3660.0044
PHE 3670.0039
SER 3680.0038
GLU 3690.0041
VAL 3700.0042
ASP 3710.0046
LEU 3720.0051
PRO 3730.0059
SER 3740.0060
LEU 3750.0059
GLU 3760.0067
PHE 3770.0058
LEU 3780.0053
ASP 3790.0051
LEU 3800.0046
SER 3810.0045
ARG 3820.0037
ASN 3830.0036
GLY 3840.0048
LEU 3850.0043
SER 3860.0053
PHE 3870.0043
LYS 3880.0040
GLY 3890.0042
CYS 3900.0045
CYS 3910.0048
SER 3920.0049
GLN 3930.0054
SER 3940.0052
ASP 3950.0051
PHE 3960.0055
GLY 3970.0067
THR 3980.0069
ILE 3990.0072
SER 4000.0071
LEU 4010.0072
LYS 4020.0067
TYR 4030.0063
LEU 4040.0057
ASP 4050.0054
LEU 4060.0047
SER 4070.0041
PHE 4080.0039
ASN 4090.0037
GLY 4100.0036
VAL 4110.0036
ILE 4120.0035
THR 4130.0031
MET 4140.0034
SER 4150.0035
SER 4160.0041
ASN 4170.0039
PHE 4180.0047
LEU 4190.0052
GLY 4200.0060
LEU 4210.0058
GLU 4220.0058
GLN 4230.0062
LEU 4240.0059
GLU 4250.0059
HIS 4260.0058
LEU 4270.0049
ASP 4280.0045
PHE 4290.0035
GLN 4300.0037
HIS 4310.0033
SER 4320.0031
ASN 4330.0025
LEU 4340.0023
LYS 4350.0019
GLN 4360.0018
MET 4370.0018
SER 4380.0017
GLU 4390.0020
PHE 4400.0025
SER 4410.0027
VAL 4420.0030
PHE 4430.0033
LEU 4440.0035
SER 4450.0044
LEU 4460.0043
ARG 4470.0046
ASN 4480.0049
LEU 4490.0044
ILE 4500.0043
TYR 4510.0041
LEU 4520.0034
ASP 4530.0031
ILE 4540.0022
SER 4550.0025
HIS 4560.0024
THR 4570.0023
HIS 4580.0025
THR 4590.0017
ARG 4600.0025
VAL 4610.0026
ALA 4620.0032
PHE 4630.0030
ASN 4640.0034
GLY 4650.0032
ILE 4660.0024
PHE 4670.0025
ASN 4680.0030
GLY 4690.0035
LEU 4700.0030
SER 4710.0033
SER 4720.0035
LEU 4730.0028
GLU 4740.0026
VAL 4750.0027
LEU 4760.0023
LYS 4770.0021
MET 4780.0018
ALA 4790.0026
GLY 4800.0031
ASN 4810.0026
SER 4820.0042
PHE 4830.0045
GLN 4840.0051
GLU 4850.0062
ASN 4860.0058
PHE 4870.0057
LEU 4880.0050
PRO 4890.0050
ASP 4900.0048
ILE 4910.0041
PHE 4920.0035
THR 4930.0040
GLU 4940.0037
LEU 4950.0030
ARG 4960.0033
ASN 4970.0028
LEU 4980.0026
THR 4990.0026
PHE 5000.0028
LEU 5010.0029
ASP 5020.0026
LEU 5030.0033
SER 5040.0035
GLN 5050.0041
CYS 5060.0042
GLN 5070.0055
LEU 5080.0054
GLU 5090.0060
GLN 5100.0060
LEU 5110.0056
SER 5120.0057
PRO 5130.0057
THR 5140.0054
ALA 5150.0051
PHE 5160.0046
ASN 5170.0047
SER 5180.0042
LEU 5190.0039
SER 5200.0040
SER 5210.0035
LEU 5220.0040
GLN 5230.0039
VAL 5240.0039
LEU 5250.0041
ASN 5260.0042
MET 5270.0046
SER 5280.0045
HIS 5290.0050
ASN 5300.0053
ASN 5310.0055
PHE 5320.0051
PHE 5330.0046
SER 5340.0043
LEU 5350.0042
ASP 5360.0044
THR 5370.0045
PHE 5380.0047
PRO 5390.0051
TYR 5400.0050
LYS 5410.0049
CYS 5420.0048
LEU 5430.0047
ASN 5440.0046
SER 5450.0045
LEU 5460.0047
GLN 5470.0050
VAL 5480.0050
LEU 5490.0050
ASP 5500.0051
TYR 5510.0050
SER 5520.0051
LEU 5530.0054
ASN 5540.0052
HIS 5550.0048
ILE 5560.0041
MET 5570.0034
THR 5580.0027
SER 5590.0028
LYS 5600.0030
LYS 5610.0036
GLN 5620.0030
GLU 5630.0035
LEU 5640.0032
GLN 5650.0033
HIS 5660.0040
PHE 5670.0045
PRO 5680.0048
SER 5690.0049
SER 5700.0051
LEU 5710.0050
ALA 5720.0052
PHE 5730.0052
LEU 5740.0048
ASN 5750.0051
LEU 5760.0046
THR 5770.0053
GLN 5780.0060
ASN 5790.0052
ASP 5800.0048
PHE 5810.0036
ALA 5820.0043
CYS 5830.0048
THR 5840.0052
CYS 5850.0053
GLU 5860.0038
HIS 5870.0020
GLN 5880.0030
SER 5890.0024
PHE 5900.0006
LEU 5910.0014
GLN 5920.0018
TRP 5930.0011
ILE 5940.0011
LYS 5950.0008
ASP 5960.0016
GLN 5970.0020
ARG 5980.0018
GLN 5990.0028
LEU 6000.0040
LEU 6010.0039
VAL 6020.0053
GLU 6030.0057
VAL 6040.0043
GLU 6050.0058
ARG 6060.0066
MET 6070.0055
GLU 6080.0064
CYS 6090.0062
ALA 6100.0074
THR 6110.0071
PRO 6120.0089
SER 6130.0116
ASP 6140.0124
LYS 6150.0099
GLN 6160.0103
GLY 6170.0097
MET 6180.0083
PRO 6190.0064
VAL 6200.0045
LEU 6210.0035
SER 6220.0060
LEU 6230.0065
ASN 6240.0078
ILE 6250.0068
THR 6260.0093
CYS 6270.0136
GLU 10.0487
ALA 20.0482
ALA 30.0494
ALA 40.0263
LYS 50.0179
MET 60.0357
GLN 70.0243
ARG 80.0200
LEU 90.0406
VAL 100.0474
LEU 110.0374
LEU 120.0472
LEU 130.0504
ALA 140.0423
ILE 150.0452
SER 160.0414
LEU 170.0340
LEU 180.0326
LEU 190.0335
TYR 200.0254
GLN 210.0170
ASP 220.0215
LEU 230.0176
PRO 240.0132
VAL 250.0051
ARG 260.0066
SER 270.0058
GLU 280.0079
PHE 290.0071
GLU 300.0055
LEU 310.0044
ASP 320.0055
ARG 330.0045
ILE 340.0044
CYS 350.0058
GLY 360.0038
TYR 370.0039
GLY 380.0033
THR 390.0046
ALA 400.0043
ARG 410.0045
CYS 420.0076
ARG 430.0085
LYS 440.0115
LYS 450.0102
CYS 460.0048
ARG 470.0030
SER 480.0022
GLN 490.0016
GLU 500.0018
TYR 510.0038
ARG 520.0078
ILE 530.0101
GLY 540.0131
ARG 550.0147
CYS 560.0128
PRO 570.0150
ASN 580.0153
THR 590.0170
TYR 600.0137
ALA 610.0101
CYS 620.0082
CYS 630.0057
LEU 640.0046
ARG 650.0023
LYS 660.0035
TRP 670.0043
ASP 680.0042
GLU 690.0052
SER 700.0050
LEU 710.0048
LEU 720.0054
ASN 730.0051
ARG 740.0044
THR 750.0049
LYS 760.0049
PRO 770.0040
GLU 780.0033
ALA 790.0033
ALA 800.0040
ALA 810.0019
LYS 820.0038
LYS 830.0040
GLU 840.0062
MET 850.0083
ASN 860.0091
LEU 870.0094
SER 880.0087
VAL 890.0085
GLY 900.0083
LEU 910.0075
GLY 920.0074
GLY 930.0075
GLY 940.0081
SER 950.0078
ASN 960.0079
LEU 970.0081
SER 980.0083
VAL 990.0089
GLY 1000.0090
LEU 1010.0107
GLY 1020.0117
GLU 1030.0101
ILE 1040.0171
GLY 1050.0214
GLY 1060.0255
GLY 1070.0193
SER 1080.0127
LYS 1090.0077
LEU 1100.0076
LEU 1110.0052
ASP 1120.0053
ILE 1130.0056
ASN 1140.0057
LEU 1150.0055
GLY 1160.0070
ARG 1170.0113
GLY 1180.0107
GLY 1190.0083
GLY 1200.0052
SER 1210.0048
MET 1220.0063
VAL 1230.0074
ASP 1240.0093
LEU 1250.0105
THR 1260.0124
PHE 1270.0143
GLY 1280.0153
GLY 1290.0177
VAL 1300.0189
GLY 1310.0183
GLY 1320.0180
GLY 1330.0176
SER 1340.0176
THR 1350.0174
PHE 1360.0177
THR 1370.0155
PHE 1380.0123
PHE 1390.0107
PRO 1400.0078
LEU 1410.0106
VAL 1420.0112
ILE 1430.0166
GLY 1440.0211
GLY 1450.0261
GLY 1460.0236
SER 1470.0182
ASP 1480.0109
ALA 1490.0120
MET 1500.0088
TYR 1510.0105
LEU 1520.0101
GLY 1530.0129
PHE 1540.0148
ALA 1550.0174
ALA 1560.0160
GLY 1570.0169
GLY 1580.0163
GLY 1590.0170
SER 1600.0168
ALA 1610.0183
GLY 1620.0186
GLY 1630.0178
GLU 1640.0171
ASN 1650.0158
HIS 1660.0124
VAL 1670.0097
ALA 1680.0077
PHE 1690.0047
GLY 1700.0045
PRO 1710.0034
GLY 1720.0034
PRO 1730.0021
GLY 1740.0024
VAL 1750.0048
ASP 1760.0086
LEU 1770.0115
THR 1780.0151
PHE 1790.0186
GLY 1800.0223
GLY 1810.0246
VAL 1820.0233
GLN 1830.0182
PHE 1840.0153
ALA 1850.0114
MET 1860.0041
VAL 1870.0023
ASN 1880.0062
ASN 1890.0088
GLY 1900.0130
PRO 1910.0110
GLY 1920.0107
PRO 1930.0072
GLY 1940.0080
GLU 1950.0049
SER 1960.0047
PHE 1970.0068
THR 1980.0038
ALA 1990.0022
GLN 2000.0025
PRO 2010.0018
ALA 2020.0017
ASP 2030.0061
MET 2040.0078
GLN 2050.0070
ALA 2060.0061
GLY 2070.0218
ILE 2080.0150
LYS 2090.0022
GLY 2100.0328
PRO 2110.0391
GLY 2120.0167
PRO 2130.0192
GLY 2140.0396
GLY 2150.0248
SER 2160.0244
ILE 2170.0156
GLN 2180.0167
VAL 2190.0112
ILE 2200.0125
ASN 2210.0101
GLY 2220.0055
SER 2230.0091
THR 2240.0132
ILE 2250.0107
GLY 2260.0241
THR 2270.0374
GLY 2280.0390
SER 2290.0368
LYS 2300.0225
LYS 2310.0058
THR 2320.0224
ILE 2330.0318
LEU 2340.0481
ILE 2350.0616
TYR 2360.0636
SER 2370.0510
ILE 2380.0439
ILE 2390.0357
GLY 2400.0277
VAL 2410.0221
LYS 2420.0158
LYS 2430.0131
GLY 2440.0174
THR 2450.0228
LEU 2460.0537
ALA 2470.0521
TRP 2480.0580
ALA 2490.0529
ARG 2500.0585
THR 2510.0557
GLY 2520.0454
PHE 2530.0338
SER 2540.0288
PRO 2550.0187
ALA 2560.0204
LYS 2570.0150
LYS 2580.0094
LEU 2590.0152
ASN 2600.0286
ALA 2610.0283
GLY 2620.0176
VAL 2630.0200
VAL 2640.0140
ARG 2650.0214
VAL 2660.0142
PHE 2670.0114
PHE 2680.0080
LEU 2690.0070
ASN 2700.0064
GLN 2710.0067
LYS 2720.0060
LYS 2730.0062
ALA 2740.0076
LYS 2750.0086
ASP 2760.0061
VAL 2770.0047
LEU 2780.0027
ARG 2790.0018
LYS 2800.0040
THR 2810.0052
SER 2820.0070
ARG 2830.0050
PRO 2840.0081
MET 2850.0086
VAL 2860.0062
ASP 2870.0063
LEU 2880.0061
THR 2890.0061
PHE 2900.0055
GLY 2910.0033
GLY 2920.0089

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.