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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 52  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0956
GLU 270.0010
PRO 280.0011
CYS 290.0006
VAL 300.0008
GLU 310.0007
VAL 320.0011
VAL 330.0011
PRO 340.0007
ASN 350.0005
ILE 360.0010
THR 370.0009
TYR 380.0005
GLN 390.0005
CYS 400.0001
MET 410.0003
GLU 420.0004
LEU 430.0007
ASN 440.0009
PHE 450.0010
TYR 460.0014
LYS 470.0014
ILE 480.0013
PRO 490.0010
ASP 500.0014
ASN 510.0011
LEU 520.0007
PRO 530.0007
PHE 540.0012
SER 550.0012
THR 560.0010
LYS 570.0013
ASN 580.0012
LEU 590.0009
ASP 600.0007
LEU 610.0005
SER 620.0006
PHE 630.0003
ASN 640.0004
PRO 650.0009
LEU 660.0012
ARG 670.0014
HIS 680.0017
LEU 690.0018
GLY 700.0021
SER 710.0023
TYR 720.0021
SER 730.0017
PHE 740.0016
PHE 750.0019
SER 760.0016
PHE 770.0014
PRO 780.0018
GLU 790.0016
LEU 800.0015
GLN 810.0017
VAL 820.0014
LEU 830.0013
ASP 840.0011
LEU 850.0010
SER 860.0010
ARG 870.0009
CYS 880.0008
GLU 890.0010
ILE 900.0014
GLN 910.0018
THR 920.0020
ILE 930.0020
GLU 940.0023
ASP 950.0025
GLY 960.0023
ALA 970.0020
TYR 980.0019
GLN 990.0022
SER 1000.0020
LEU 1010.0019
SER 1020.0020
HIS 1030.0019
LEU 1040.0016
SER 1050.0017
THR 1060.0015
LEU 1070.0015
ILE 1080.0014
LEU 1090.0014
THR 1100.0014
GLY 1110.0013
ASN 1120.0013
PRO 1130.0015
ILE 1140.0018
GLN 1150.0021
SER 1160.0024
LEU 1170.0022
ALA 1180.0024
LEU 1190.0026
GLY 1200.0024
ALA 1210.0022
PHE 1220.0021
SER 1230.0023
GLY 1240.0021
LEU 1250.0020
SER 1260.0022
SER 1270.0018
LEU 1280.0017
GLN 1290.0017
LYS 1300.0015
LEU 1310.0013
VAL 1320.0015
ALA 1330.0017
VAL 1340.0017
GLU 1350.0017
THR 1360.0017
ASN 1370.0019
LEU 1380.0021
ALA 1390.0024
SER 1400.0025
LEU 1410.0024
GLU 1420.0027
ASN 1430.0025
PHE 1440.0023
PRO 1450.0023
ILE 1460.0022
GLY 1470.0023
HIS 1480.0022
LEU 1490.0020
LYS 1500.0021
THR 1510.0019
LEU 1520.0015
LYS 1530.0016
GLU 1540.0016
LEU 1550.0016
ASN 1560.0016
VAL 1570.0019
ALA 1580.0020
HIS 1590.0020
ASN 1600.0021
LEU 1610.0023
ILE 1620.0024
GLN 1630.0027
SER 1640.0027
PHE 1650.0027
LYS 1660.0027
LEU 1670.0026
PRO 1680.0026
GLU 1690.0026
TYR 1700.0024
PHE 1710.0023
SER 1720.0024
ASN 1730.0022
LEU 1740.0020
THR 1750.0021
ASN 1760.0019
LEU 1770.0015
GLU 1780.0017
HIS 1790.0017
LEU 1800.0018
ASP 1810.0018
LEU 1820.0020
SER 1830.0021
SER 1840.0021
ASN 1850.0022
LYS 1860.0025
ILE 1870.0026
GLN 1880.0028
SER 1890.0030
ILE 1900.0029
TYR 1910.0031
CYS 1920.0031
THR 1930.0030
ASP 1940.0028
LEU 1950.0028
ARG 1960.0028
VAL 1970.0025
LEU 1980.0024
HIS 1990.0026
GLN 2000.0025
MET 2010.0023
PRO 2020.0024
LEU 2030.0021
LEU 2040.0019
ASN 2050.0018
LEU 2060.0018
SER 2070.0017
LEU 2080.0018
ASP 2090.0018
LEU 2100.0020
SER 2110.0021
LEU 2120.0021
ASN 2130.0022
PRO 2140.0025
MET 2150.0028
ASN 2160.0031
PHE 2170.0032
ILE 2180.0031
GLN 2190.0032
PRO 2200.0033
GLY 2210.0032
ALA 2220.0029
PHE 2230.0027
LYS 2240.0029
GLU 2250.0026
ILE 2260.0024
ARG 2270.0021
LEU 2280.0018
HIS 2290.0017
LYS 2300.0017
LEU 2310.0017
THR 2320.0019
LEU 2330.0021
ARG 2340.0020
ASN 2350.0021
ASN 2360.0023
PHE 2370.0026
ASP 2380.0027
SER 2390.0030
LEU 2400.0032
ASN 2410.0034
VAL 2420.0032
MET 2430.0030
LYS 2440.0033
THR 2450.0033
CYS 2460.0030
ILE 2470.0029
GLN 2480.0032
GLY 2490.0030
LEU 2500.0027
ALA 2510.0030
GLY 2520.0029
LEU 2530.0023
GLU 2540.0022
VAL 2550.0020
HIS 2560.0021
ARG 2570.0019
LEU 2580.0019
VAL 2590.0018
LEU 2600.0020
GLY 2610.0021
GLU 2620.0020
PHE 2630.0018
ARG 2640.0018
ASN 2650.0017
GLU 2660.0017
GLY 2670.0018
ASN 2680.0021
LEU 2690.0025
GLU 2700.0028
LYS 2710.0031
PHE 2720.0030
ASP 2730.0034
LYS 2740.0035
SER 2750.0034
ALA 2760.0030
LEU 2770.0029
GLU 2780.0033
GLY 2790.0029
LEU 2800.0026
CYS 2810.0031
ASN 2820.0032
LEU 2830.0025
THR 2840.0024
ILE 2850.0024
GLU 2860.0026
GLU 2870.0024
PHE 2880.0023
ARG 2890.0021
LEU 2900.0021
ALA 2910.0018
TYR 2920.0019
LEU 2930.0021
ASP 2940.0020
TYR 2950.0024
TYR 2960.0026
LEU 2970.0027
ASP 2980.0031
GLY 2990.0032
ILE 3000.0029
ILE 3010.0032
ASP 3020.0034
LEU 3030.0031
PHE 3040.0029
ASN 3050.0031
CYS 3060.0028
LEU 3070.0026
THR 3080.0030
ASN 3090.0029
VAL 3100.0026
SER 3110.0028
SER 3120.0027
PHE 3130.0025
SER 3140.0023
LEU 3150.0021
VAL 3160.0018
SER 3170.0016
VAL 3180.0019
THR 3190.0022
ILE 3200.0025
GLU 3210.0029
ARG 3220.0032
VAL 3230.0031
LYS 3240.0035
ASP 3250.0031
PHE 3260.0030
SER 3270.0035
TYR 3280.0033
ASN 3290.0034
PHE 3300.0031
GLY 3310.0031
TRP 3320.0033
GLN 3330.0035
HIS 3340.0034
LEU 3350.0032
GLU 3360.0030
LEU 3370.0021
VAL 3380.0019
ASN 3390.0016
CYS 3400.0017
LYS 3410.0020
PHE 3420.0024
GLY 3430.0030
GLN 3440.0031
PHE 3450.0030
PRO 3460.0025
THR 3470.0031
LEU 3480.0032
LYS 3490.0035
LEU 3500.0034
LYS 3510.0037
SER 3520.0038
LEU 3530.0037
LYS 3540.0039
ARG 3550.0037
LEU 3560.0036
THR 3570.0031
PHE 3580.0028
THR 3590.0026
SER 3600.0021
ASN 3610.0020
LYS 3620.0016
GLY 3630.0026
GLY 3640.0028
ASN 3650.0024
ALA 3660.0031
PHE 3670.0025
SER 3680.0027
GLU 3690.0028
VAL 3700.0029
ASP 3710.0030
LEU 3720.0034
PRO 3730.0038
SER 3740.0038
LEU 3750.0035
GLU 3760.0036
PHE 3770.0035
LEU 3780.0034
ASP 3790.0032
LEU 3800.0032
SER 3810.0030
ARG 3820.0031
ASN 3830.0028
GLY 3840.0030
LEU 3850.0033
SER 3860.0038
PHE 3870.0024
LYS 3880.0024
GLY 3890.0022
CYS 3900.0021
CYS 3910.0021
SER 3920.0019
GLN 3930.0023
SER 3940.0026
ASP 3950.0025
PHE 3960.0028
GLY 3970.0032
THR 3980.0030
ILE 3990.0028
SER 4000.0029
LEU 4010.0029
LYS 4020.0028
TYR 4030.0027
LEU 4040.0027
ASP 4050.0027
LEU 4060.0027
SER 4070.0034
PHE 4080.0035
ASN 4090.0034
GLY 4100.0035
VAL 4110.0035
ILE 4120.0028
THR 4130.0027
MET 4140.0021
SER 4150.0025
SER 4160.0020
ASN 4170.0016
PHE 4180.0015
LEU 4190.0017
GLY 4200.0019
LEU 4210.0017
GLU 4220.0014
GLN 4230.0014
LEU 4240.0016
GLU 4250.0015
HIS 4260.0017
LEU 4270.0014
ASP 4280.0021
PHE 4290.0027
GLN 4300.0030
HIS 4310.0038
SER 4320.0031
ASN 4330.0032
LEU 4340.0029
LYS 4350.0033
GLN 4360.0034
MET 4370.0030
SER 4380.0034
GLU 4390.0038
PHE 4400.0033
SER 4410.0026
VAL 4420.0022
PHE 4430.0016
LEU 4440.0017
SER 4450.0013
LEU 4460.0009
ARG 4470.0008
ASN 4480.0003
LEU 4490.0006
ILE 4500.0004
TYR 4510.0008
LEU 4520.0011
ASP 4530.0016
ILE 4540.0024
SER 4550.0025
HIS 4560.0033
THR 4570.0034
HIS 4580.0039
THR 4590.0038
ARG 4600.0042
VAL 4610.0041
ALA 4620.0042
PHE 4630.0040
ASN 4640.0038
GLY 4650.0034
ILE 4660.0030
PHE 4670.0025
ASN 4680.0026
GLY 4690.0022
LEU 4700.0018
SER 4710.0018
SER 4720.0013
LEU 4730.0014
GLU 4740.0013
VAL 4750.0014
LEU 4760.0018
LYS 4770.0019
MET 4780.0025
ALA 4790.0025
GLY 4800.0031
ASN 4810.0035
SER 4820.0039
PHE 4830.0043
GLN 4840.0050
GLU 4850.0050
ASN 4860.0043
PHE 4870.0045
LEU 4880.0041
PRO 4890.0042
ASP 4900.0040
ILE 4910.0037
PHE 4920.0032
THR 4930.0033
GLU 4940.0031
LEU 4950.0028
ARG 4960.0027
ASN 4970.0023
LEU 4980.0024
THR 4990.0024
PHE 5000.0026
LEU 5010.0027
ASP 5020.0026
LEU 5030.0031
SER 5040.0028
GLN 5050.0032
CYS 5060.0038
GLN 5070.0038
LEU 5080.0039
GLU 5090.0040
GLN 5100.0043
LEU 5110.0043
SER 5120.0042
PRO 5130.0042
THR 5140.0042
ALA 5150.0041
PHE 5160.0041
ASN 5170.0037
SER 5180.0037
LEU 5190.0035
SER 5200.0034
SER 5210.0033
LEU 5220.0035
GLN 5230.0037
VAL 5240.0036
LEU 5250.0034
ASN 5260.0034
MET 5270.0036
SER 5280.0032
HIS 5290.0031
ASN 5300.0035
ASN 5310.0035
PHE 5320.0035
PHE 5330.0033
SER 5340.0038
LEU 5350.0041
ASP 5360.0047
THR 5370.0044
PHE 5380.0047
PRO 5390.0047
TYR 5400.0049
LYS 5410.0052
CYS 5420.0043
LEU 5430.0043
ASN 5440.0043
SER 5450.0043
LEU 5460.0042
GLN 5470.0048
VAL 5480.0045
LEU 5490.0043
ASP 5500.0040
TYR 5510.0038
SER 5520.0035
LEU 5530.0031
ASN 5540.0032
HIS 5550.0030
ILE 5560.0034
MET 5570.0035
THR 5580.0040
SER 5590.0045
LYS 5600.0046
LYS 5610.0051
GLN 5620.0052
GLU 5630.0054
LEU 5640.0051
GLN 5650.0054
HIS 5660.0056
PHE 5670.0050
PRO 5680.0051
SER 5690.0051
SER 5700.0051
LEU 5710.0050
ALA 5720.0060
PHE 5730.0054
LEU 5740.0049
ASN 5750.0045
LEU 5760.0040
THR 5770.0036
GLN 5780.0030
ASN 5790.0030
ASP 5800.0027
PHE 5810.0031
ALA 5820.0037
CYS 5830.0040
THR 5840.0051
CYS 5850.0061
GLU 5860.0062
HIS 5870.0052
GLN 5880.0057
SER 5890.0063
PHE 5900.0055
LEU 5910.0048
GLN 5920.0054
TRP 5930.0057
ILE 5940.0050
LYS 5950.0052
ASP 5960.0062
GLN 5970.0059
ARG 5980.0052
GLN 5990.0060
LEU 6000.0060
LEU 6010.0052
VAL 6020.0051
GLU 6030.0044
VAL 6040.0040
GLU 6050.0034
ARG 6060.0034
MET 6070.0032
GLU 6080.0027
CYS 6090.0029
ALA 6100.0029
THR 6110.0036
PRO 6120.0047
SER 6130.0048
ASP 6140.0051
LYS 6150.0040
GLN 6160.0035
GLY 6170.0031
MET 6180.0029
PRO 6190.0029
VAL 6200.0034
LEU 6210.0038
SER 6220.0034
LEU 6230.0039
ASN 6240.0049
ILE 6250.0059
THR 6260.0070
CYS 6270.0093
GLU 10.0285
ALA 20.0276
ALA 30.0273
ALA 40.0140
LYS 50.0089
MET 60.0192
GLN 70.0124
ARG 80.0115
LEU 90.0230
VAL 100.0271
LEU 110.0219
LEU 120.0274
LEU 130.0288
ALA 140.0242
ILE 150.0261
SER 160.0235
LEU 170.0190
LEU 180.0178
LEU 190.0183
TYR 200.0134
GLN 210.0081
ASP 220.0110
LEU 230.0088
PRO 240.0070
VAL 250.0027
ARG 260.0044
SER 270.0045
GLU 280.0048
PHE 290.0045
GLU 300.0046
LEU 310.0044
ASP 320.0045
ARG 330.0042
ILE 340.0045
CYS 350.0048
GLY 360.0036
TYR 370.0036
GLY 380.0039
THR 390.0042
ALA 400.0041
ARG 410.0041
CYS 420.0051
ARG 430.0049
LYS 440.0060
LYS 450.0053
CYS 460.0038
ARG 470.0027
SER 480.0022
GLN 490.0019
GLU 500.0027
TYR 510.0035
ARG 520.0052
ILE 530.0064
GLY 540.0077
ARG 550.0085
CYS 560.0077
PRO 570.0087
ASN 580.0083
THR 590.0090
TYR 600.0074
ALA 610.0060
CYS 620.0055
CYS 630.0042
LEU 640.0041
ARG 650.0029
LYS 660.0020
TRP 670.0021
ASP 680.0019
GLU 690.0018
SER 700.0020
LEU 710.0020
LEU 720.0019
ASN 730.0018
ARG 740.0020
THR 750.0020
LYS 760.0029
PRO 770.0034
GLU 780.0027
ALA 790.0031
ALA 800.0046
ALA 810.0160
LYS 820.0166
LYS 830.0156
GLU 840.0161
MET 850.0156
ASN 860.0142
LEU 870.0120
SER 880.0108
VAL 890.0096
GLY 900.0091
LEU 910.0106
GLY 920.0121
GLY 930.0184
GLY 940.0196
SER 950.0187
ASN 960.0144
LEU 970.0149
SER 980.0154
VAL 990.0163
GLY 1000.0178
LEU 1010.0139
GLY 1020.0088
GLU 1030.0131
ILE 1040.0139
GLY 1050.0225
GLY 1060.0375
GLY 1070.0285
SER 1080.0232
LYS 1090.0121
LEU 1100.0060
LEU 1110.0082
ASP 1120.0105
ILE 1130.0099
ASN 1140.0125
LEU 1150.0119
GLY 1160.0134
ARG 1170.0128
GLY 1180.0074
GLY 1190.0048
GLY 1200.0063
SER 1210.0041
MET 1220.0033
VAL 1230.0039
ASP 1240.0036
LEU 1250.0052
THR 1260.0049
PHE 1270.0072
GLY 1280.0083
GLY 1290.0097
VAL 1300.0121
GLY 1310.0193
GLY 1320.0146
GLY 1330.0114
SER 1340.0078
THR 1350.0054
PHE 1360.0027
THR 1370.0028
PHE 1380.0008
PHE 1390.0043
PRO 1400.0018
LEU 1410.0051
VAL 1420.0098
ILE 1430.0116
GLY 1440.0137
GLY 1450.0203
GLY 1460.0189
SER 1470.0173
ASP 1480.0143
ALA 1490.0135
MET 1500.0106
TYR 1510.0037
LEU 1520.0035
GLY 1530.0023
PHE 1540.0038
ALA 1550.0062
ALA 1560.0047
GLY 1570.0016
GLY 1580.0016
GLY 1590.0071
SER 1600.0119
ALA 1610.0133
GLY 1620.0130
GLY 1630.0110
GLU 1640.0090
ASN 1650.0067
HIS 1660.0049
VAL 1670.0045
ALA 1680.0032
PHE 1690.0030
GLY 1700.0033
PRO 1710.0054
GLY 1720.0070
PRO 1730.0083
GLY 1740.0068
VAL 1750.0048
ASP 1760.0040
LEU 1770.0056
THR 1780.0049
PHE 1790.0074
GLY 1800.0070
GLY 1810.0031
VAL 1820.0079
GLN 1830.0084
PHE 1840.0118
ALA 1850.0135
MET 1860.0185
VAL 1870.0318
ASN 1880.0319
ASN 1890.0497
GLY 1900.0489
PRO 1910.0330
GLY 1920.0289
PRO 1930.0258
GLY 1940.0326
GLU 1950.0097
SER 1960.0155
PHE 1970.0159
THR 1980.0082
ALA 1990.0108
GLN 2000.0067
PRO 2010.0053
ALA 2020.0134
ASP 2030.0152
MET 2040.0120
GLN 2050.0235
ALA 2060.0302
GLY 2070.0606
ILE 2080.0356
LYS 2090.0226
GLY 2100.0956
PRO 2110.0922
GLY 2120.0632
PRO 2130.0325
GLY 2140.0796
GLY 2150.0686
SER 2160.0707
ILE 2170.0520
GLN 2180.0467
VAL 2190.0620
ILE 2200.0631
ASN 2210.0755
GLY 2220.0606
SER 2230.0578
THR 2240.0454
ILE 2250.0307
GLY 2260.0090
THR 2270.0069
GLY 2280.0069
SER 2290.0137
LYS 2300.0148
LYS 2310.0167
THR 2320.0258
ILE 2330.0273
LEU 2340.0339
ILE 2350.0401
TYR 2360.0411
SER 2370.0315
ILE 2380.0278
ILE 2390.0204
GLY 2400.0159
VAL 2410.0130
LYS 2420.0092
LYS 2430.0077
GLY 2440.0122
THR 2450.0157
LEU 2460.0349
ALA 2470.0334
TRP 2480.0375
ALA 2490.0327
ARG 2500.0364
THR 2510.0265
GLY 2520.0226
PHE 2530.0126
SER 2540.0092
PRO 2550.0018
ALA 2560.0042
LYS 2570.0087
LYS 2580.0100
LEU 2590.0148
ASN 2600.0191
ALA 2610.0183
GLY 2620.0146
VAL 2630.0148
VAL 2640.0143
ARG 2650.0136
VAL 2660.0127
PHE 2670.0102
PHE 2680.0086
LEU 2690.0105
ASN 2700.0138
GLN 2710.0101
LYS 2720.0093
LYS 2730.0118
ALA 2740.0131
LYS 2750.0126
ASP 2760.0133
VAL 2770.0134
LEU 2780.0132
ARG 2790.0128
LYS 2800.0127
THR 2810.0106
SER 2820.0066
ARG 2830.0071
PRO 2840.0050
MET 2850.0032
VAL 2860.0183
ASP 2870.0207
LEU 2880.0081
THR 2890.0243
PHE 2900.0170
GLY 2910.0161
GLY 2920.0532

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.