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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 53  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0864
GLU 270.0030
PRO 280.0041
CYS 290.0025
VAL 300.0041
GLU 310.0045
VAL 320.0071
VAL 330.0084
PRO 340.0074
ASN 350.0080
ILE 360.0085
THR 370.0067
TYR 380.0041
GLN 390.0042
CYS 400.0025
MET 410.0048
GLU 420.0065
LEU 430.0065
ASN 440.0073
PHE 450.0054
TYR 460.0069
LYS 470.0055
ILE 480.0041
PRO 490.0039
ASP 500.0062
ASN 510.0053
LEU 520.0046
PRO 530.0067
PHE 540.0086
SER 550.0091
THR 560.0070
LYS 570.0077
ASN 580.0063
LEU 590.0040
ASP 600.0034
LEU 610.0017
SER 620.0035
PHE 630.0048
ASN 640.0042
PRO 650.0050
LEU 660.0038
ARG 670.0033
HIS 680.0038
LEU 690.0039
GLY 700.0057
SER 710.0069
TYR 720.0069
SER 730.0052
PHE 740.0056
PHE 750.0075
SER 760.0071
PHE 770.0066
PRO 780.0084
GLU 790.0084
LEU 800.0068
GLN 810.0074
VAL 820.0055
LEU 830.0039
ASP 840.0032
LEU 850.0019
SER 860.0032
ARG 870.0031
CYS 880.0020
GLU 890.0023
ILE 900.0016
GLN 910.0023
THR 920.0032
ILE 930.0037
GLU 940.0052
ASP 950.0063
GLY 960.0064
ALA 970.0051
TYR 980.0054
GLN 990.0070
SER 1000.0073
LEU 1010.0067
SER 1020.0071
HIS 1030.0071
LEU 1040.0057
SER 1050.0062
THR 1060.0050
LEU 1070.0039
ILE 1080.0034
LEU 1090.0028
THR 1100.0035
GLY 1110.0031
ASN 1120.0016
PRO 1130.0012
ILE 1140.0022
GLN 1150.0030
SER 1160.0044
LEU 1170.0039
ALA 1180.0050
LEU 1190.0060
GLY 1200.0061
ALA 1210.0050
PHE 1220.0051
SER 1230.0061
GLY 1240.0063
LEU 1250.0058
SER 1260.0068
SER 1270.0054
LEU 1280.0047
GLN 1290.0051
LYS 1300.0044
LEU 1310.0038
VAL 1320.0039
ALA 1330.0042
VAL 1340.0048
GLU 1350.0048
THR 1360.0043
ASN 1370.0052
LEU 1380.0059
ALA 1390.0074
SER 1400.0079
LEU 1410.0075
GLU 1420.0081
ASN 1430.0071
PHE 1440.0062
PRO 1450.0061
ILE 1460.0059
GLY 1470.0061
HIS 1480.0058
LEU 1490.0052
LYS 1500.0055
THR 1510.0049
LEU 1520.0040
LYS 1530.0038
GLU 1540.0038
LEU 1550.0044
ASN 1560.0046
VAL 1570.0053
ALA 1580.0061
HIS 1590.0065
ASN 1600.0067
LEU 1610.0079
ILE 1620.0084
GLN 1630.0099
SER 1640.0098
PHE 1650.0090
LYS 1660.0091
LEU 1670.0080
PRO 1680.0082
GLU 1690.0083
TYR 1700.0072
PHE 1710.0066
SER 1720.0065
ASN 1730.0059
LEU 1740.0052
THR 1750.0049
ASN 1760.0040
LEU 1770.0036
GLU 1780.0036
HIS 1790.0042
LEU 1800.0052
ASP 1810.0057
LEU 1820.0066
SER 1830.0074
SER 1840.0079
ASN 1850.0082
LYS 1860.0096
ILE 1870.0097
GLN 1880.0112
SER 1890.0114
ILE 1900.0105
TYR 1910.0111
CYS 1920.0107
THR 1930.0106
ASP 1940.0096
LEU 1950.0085
ARG 1960.0087
VAL 1970.0074
LEU 1980.0065
HIS 1990.0071
GLN 2000.0067
MET 2010.0054
PRO 2020.0050
LEU 2030.0032
LEU 2040.0032
ASN 2050.0029
LEU 2060.0039
SER 2070.0047
LEU 2080.0056
ASP 2090.0064
LEU 2100.0075
SER 2110.0083
LEU 2120.0088
ASN 2130.0091
PRO 2140.0106
MET 2150.0108
ASN 2160.0122
PHE 2170.0121
ILE 2180.0109
GLN 2190.0114
PRO 2200.0115
GLY 2210.0102
ALA 2220.0095
PHE 2230.0082
LYS 2240.0084
GLU 2250.0067
ILE 2260.0060
ARG 2270.0053
LEU 2280.0050
HIS 2290.0050
LYS 2300.0057
LEU 2310.0064
THR 2320.0072
LEU 2330.0081
ARG 2340.0085
ASN 2350.0092
ASN 2360.0092
PHE 2370.0104
ASP 2380.0109
SER 2390.0115
LEU 2400.0119
ASN 2410.0121
VAL 2420.0122
MET 2430.0115
LYS 2440.0121
THR 2450.0119
CYS 2460.0107
ILE 2470.0107
GLN 2480.0114
GLY 2490.0103
LEU 2500.0092
ALA 2510.0098
GLY 2520.0087
LEU 2530.0074
GLU 2540.0067
VAL 2550.0067
HIS 2560.0071
ARG 2570.0073
LEU 2580.0075
VAL 2590.0077
LEU 2600.0084
GLY 2610.0090
GLU 2620.0087
PHE 2630.0084
ARG 2640.0082
ASN 2650.0079
GLU 2660.0080
GLY 2670.0084
ASN 2680.0090
LEU 2690.0098
GLU 2700.0108
LYS 2710.0114
PHE 2720.0108
ASP 2730.0119
LYS 2740.0124
SER 2750.0120
ALA 2760.0108
LEU 2770.0108
GLU 2780.0117
GLY 2790.0103
LEU 2800.0096
CYS 2810.0107
ASN 2820.0105
LEU 2830.0088
THR 2840.0084
ILE 2850.0088
GLU 2860.0093
GLU 2870.0091
PHE 2880.0090
ARG 2890.0086
LEU 2900.0086
ALA 2910.0078
TYR 2920.0078
LEU 2930.0080
ASP 2940.0075
TYR 2950.0082
TYR 2960.0086
LEU 2970.0086
ASP 2980.0096
GLY 2990.0103
ILE 3000.0102
ILE 3010.0114
ASP 3020.0123
LEU 3030.0113
PHE 3040.0110
ASN 3050.0118
CYS 3060.0109
LEU 3070.0107
THR 3080.0118
ASN 3090.0114
VAL 3100.0106
SER 3110.0109
SER 3120.0104
PHE 3130.0102
SER 3140.0093
LEU 3150.0089
VAL 3160.0079
SER 3170.0067
VAL 3180.0071
THR 3190.0075
ILE 3200.0081
GLU 3210.0086
ARG 3220.0096
VAL 3230.0097
LYS 3240.0111
ASP 3250.0105
PHE 3260.0103
SER 3270.0114
TYR 3280.0115
ASN 3290.0118
PHE 3300.0114
GLY 3310.0116
TRP 3320.0117
GLN 3330.0119
HIS 3340.0114
LEU 3350.0113
GLU 3360.0108
LEU 3370.0088
VAL 3380.0086
ASN 3390.0084
CYS 3400.0084
LYS 3410.0086
PHE 3420.0083
GLY 3430.0084
GLN 3440.0089
PHE 3450.0091
PRO 3460.0090
THR 3470.0096
LEU 3480.0099
LYS 3490.0103
LEU 3500.0105
LYS 3510.0109
SER 3520.0117
LEU 3530.0112
LYS 3540.0112
ARG 3550.0108
LEU 3560.0105
THR 3570.0096
PHE 3580.0094
THR 3590.0091
SER 3600.0089
ASN 3610.0089
LYS 3620.0088
GLY 3630.0089
GLY 3640.0085
ASN 3650.0080
ALA 3660.0075
PHE 3670.0071
SER 3680.0070
GLU 3690.0065
VAL 3700.0070
ASP 3710.0072
LEU 3720.0083
PRO 3730.0084
SER 3740.0089
LEU 3750.0085
GLU 3760.0086
PHE 3770.0083
LEU 3780.0078
ASP 3790.0080
LEU 3800.0080
SER 3810.0080
ARG 3820.0088
ASN 3830.0091
GLY 3840.0095
LEU 3850.0088
SER 3860.0091
PHE 3870.0078
LYS 3880.0086
GLY 3890.0078
CYS 3900.0059
CYS 3910.0050
SER 3920.0040
GLN 3930.0038
SER 3940.0049
ASP 3950.0053
PHE 3960.0055
GLY 3970.0049
THR 3980.0046
ILE 3990.0045
SER 4000.0050
LEU 4010.0049
LYS 4020.0048
TYR 4030.0047
LEU 4040.0042
ASP 4050.0051
LEU 4060.0057
SER 4070.0070
PHE 4080.0089
ASN 4090.0093
GLY 4100.0108
VAL 4110.0109
ILE 4120.0085
THR 4130.0095
MET 4140.0084
SER 4150.0101
SER 4160.0088
ASN 4170.0074
PHE 4180.0052
LEU 4190.0061
GLY 4200.0046
LEU 4210.0037
GLU 4220.0050
GLN 4230.0043
LEU 4240.0025
GLU 4250.0031
HIS 4260.0019
LEU 4270.0010
ASP 4280.0030
PHE 4290.0056
GLN 4300.0068
HIS 4310.0096
SER 4320.0086
ASN 4330.0101
LEU 4340.0091
LYS 4350.0110
GLN 4360.0117
MET 4370.0093
SER 4380.0108
GLU 4390.0126
PHE 4400.0118
SER 4410.0100
VAL 4420.0079
PHE 4430.0064
LEU 4440.0083
SER 4450.0076
LEU 4460.0058
ARG 4470.0066
ASN 4480.0060
LEU 4490.0039
ILE 4500.0038
TYR 4510.0027
LEU 4520.0024
ASP 4530.0036
ILE 4540.0055
SER 4550.0066
HIS 4560.0091
THR 4570.0095
HIS 4580.0108
THR 4590.0100
ARG 4600.0106
VAL 4610.0100
ALA 4620.0107
PHE 4630.0106
ASN 4640.0099
GLY 4650.0099
ILE 4660.0086
PHE 4670.0069
ASN 4680.0080
GLY 4690.0079
LEU 4700.0066
SER 4710.0075
SER 4720.0063
LEU 4730.0053
GLU 4740.0058
VAL 4750.0058
LEU 4760.0050
LYS 4770.0056
MET 4780.0066
ALA 4790.0075
GLY 4800.0091
ASN 4810.0092
SER 4820.0097
PHE 4830.0099
GLN 4840.0113
GLU 4850.0112
ASN 4860.0098
PHE 4870.0097
LEU 4880.0091
PRO 4890.0090
ASP 4900.0087
ILE 4910.0086
PHE 4920.0072
THR 4930.0073
GLU 4940.0076
LEU 4950.0075
ARG 4960.0079
ASN 4970.0073
LEU 4980.0072
THR 4990.0085
PHE 5000.0087
LEU 5010.0080
ASP 5020.0081
LEU 5030.0087
SER 5040.0090
GLN 5050.0100
CYS 5060.0102
GLN 5070.0103
LEU 5080.0103
GLU 5090.0103
GLN 5100.0104
LEU 5110.0107
SER 5120.0100
PRO 5130.0102
THR 5140.0102
ALA 5150.0102
PHE 5160.0106
ASN 5170.0093
SER 5180.0096
LEU 5190.0097
SER 5200.0102
SER 5210.0104
LEU 5220.0106
GLN 5230.0116
VAL 5240.0114
LEU 5250.0108
ASN 5260.0108
MET 5270.0107
SER 5280.0101
HIS 5290.0105
ASN 5300.0111
ASN 5310.0112
PHE 5320.0122
PHE 5330.0117
SER 5340.0125
LEU 5350.0128
ASP 5360.0147
THR 5370.0134
PHE 5380.0145
PRO 5390.0144
TYR 5400.0144
LYS 5410.0155
CYS 5420.0135
LEU 5430.0134
ASN 5440.0137
SER 5450.0135
LEU 5460.0131
GLN 5470.0133
VAL 5480.0126
LEU 5490.0124
ASP 5500.0115
TYR 5510.0111
SER 5520.0098
LEU 5530.0095
ASN 5540.0110
HIS 5550.0109
ILE 5560.0115
MET 5570.0130
THR 5580.0141
SER 5590.0146
LYS 5600.0169
LYS 5610.0175
GLN 5620.0165
GLU 5630.0165
LEU 5640.0143
GLN 5650.0145
HIS 5660.0157
PHE 5670.0143
PRO 5680.0149
SER 5690.0148
SER 5700.0147
LEU 5710.0137
ALA 5720.0126
PHE 5730.0118
LEU 5740.0116
ASN 5750.0105
LEU 5760.0099
THR 5770.0076
GLN 5780.0074
ASN 5790.0097
ASP 5800.0106
PHE 5810.0112
ALA 5820.0156
CYS 5830.0152
THR 5840.0196
CYS 5850.0215
GLU 5860.0232
HIS 5870.0180
GLN 5880.0166
SER 5890.0164
PHE 5900.0146
LEU 5910.0121
GLN 5920.0122
TRP 5930.0122
ILE 5940.0101
LYS 5950.0087
ASP 5960.0098
GLN 5970.0100
ARG 5980.0085
GLN 5990.0089
LEU 6000.0106
LEU 6010.0095
VAL 6020.0084
GLU 6030.0063
VAL 6040.0054
GLU 6050.0047
ARG 6060.0052
MET 6070.0065
GLU 6080.0080
CYS 6090.0115
ALA 6100.0130
THR 6110.0168
PRO 6120.0204
SER 6130.0203
ASP 6140.0213
LYS 6150.0173
GLN 6160.0149
GLY 6170.0115
MET 6180.0117
PRO 6190.0087
VAL 6200.0094
LEU 6210.0079
SER 6220.0106
LEU 6230.0135
ASN 6240.0169
ILE 6250.0166
THR 6260.0208
CYS 6270.0259
GLU 10.0282
ALA 20.0293
ALA 30.0242
ALA 40.0118
LYS 50.0123
MET 60.0191
GLN 70.0122
ARG 80.0118
LEU 90.0220
VAL 100.0258
LEU 110.0213
LEU 120.0258
LEU 130.0263
ALA 140.0228
ILE 150.0249
SER 160.0223
LEU 170.0173
LEU 180.0166
LEU 190.0170
TYR 200.0133
GLN 210.0096
ASP 220.0125
LEU 230.0103
PRO 240.0140
VAL 250.0142
ARG 260.0151
SER 270.0145
GLU 280.0142
PHE 290.0132
GLU 300.0134
LEU 310.0139
ASP 320.0138
ARG 330.0126
ILE 340.0140
CYS 350.0153
GLY 360.0118
TYR 370.0114
GLY 380.0127
THR 390.0133
ALA 400.0136
ARG 410.0126
CYS 420.0149
ARG 430.0137
LYS 440.0172
LYS 450.0155
CYS 460.0116
ARG 470.0078
SER 480.0064
GLN 490.0050
GLU 500.0084
TYR 510.0119
ARG 520.0171
ILE 530.0208
GLY 540.0248
ARG 550.0265
CYS 560.0238
PRO 570.0267
ASN 580.0244
THR 590.0272
TYR 600.0219
ALA 610.0185
CYS 620.0172
CYS 630.0133
LEU 640.0130
ARG 650.0094
LYS 660.0072
TRP 670.0078
ASP 680.0068
GLU 690.0066
SER 700.0069
LEU 710.0075
LEU 720.0074
ASN 730.0068
ARG 740.0077
THR 750.0083
LYS 760.0056
PRO 770.0047
GLU 780.0046
ALA 790.0045
ALA 800.0047
ALA 810.0087
LYS 820.0079
LYS 830.0079
GLU 840.0085
MET 850.0078
ASN 860.0064
LEU 870.0054
SER 880.0032
VAL 890.0015
GLY 900.0025
LEU 910.0046
GLY 920.0093
GLY 930.0144
GLY 940.0138
SER 950.0099
ASN 960.0030
LEU 970.0019
SER 980.0018
VAL 990.0051
GLY 1000.0068
LEU 1010.0084
GLY 1020.0089
GLU 1030.0067
ILE 1040.0108
GLY 1050.0136
GLY 1060.0191
GLY 1070.0136
SER 1080.0100
LYS 1090.0048
LEU 1100.0060
LEU 1110.0081
ASP 1120.0082
ILE 1130.0064
ASN 1140.0081
LEU 1150.0074
GLY 1160.0103
ARG 1170.0137
GLY 1180.0111
GLY 1190.0074
GLY 1200.0024
SER 1210.0022
MET 1220.0023
VAL 1230.0024
ASP 1240.0039
LEU 1250.0051
THR 1260.0065
PHE 1270.0075
GLY 1280.0081
GLY 1290.0092
VAL 1300.0104
GLY 1310.0114
GLY 1320.0089
GLY 1330.0073
SER 1340.0070
THR 1350.0059
PHE 1360.0077
THR 1370.0053
PHE 1380.0058
PHE 1390.0043
PRO 1400.0043
LEU 1410.0056
VAL 1420.0079
ILE 1430.0078
GLY 1440.0105
GLY 1450.0118
GLY 1460.0107
SER 1470.0095
ASP 1480.0080
ALA 1490.0074
MET 1500.0066
TYR 1510.0051
LEU 1520.0053
GLY 1530.0066
PHE 1540.0073
ALA 1550.0086
ALA 1560.0052
GLY 1570.0030
GLY 1580.0023
GLY 1590.0033
SER 1600.0056
ALA 1610.0062
GLY 1620.0068
GLY 1630.0069
GLU 1640.0073
ASN 1650.0069
HIS 1660.0060
VAL 1670.0056
ALA 1680.0048
PHE 1690.0041
GLY 1700.0046
PRO 1710.0068
GLY 1720.0079
PRO 1730.0082
GLY 1740.0075
VAL 1750.0059
ASP 1760.0068
LEU 1770.0074
THR 1780.0079
PHE 1790.0092
GLY 1800.0099
GLY 1810.0124
VAL 1820.0149
GLN 1830.0137
PHE 1840.0142
ALA 1850.0145
MET 1860.0124
VAL 1870.0186
ASN 1880.0169
ASN 1890.0241
GLY 1900.0218
PRO 1910.0139
GLY 1920.0140
PRO 1930.0129
GLY 1940.0125
GLU 1950.0065
SER 1960.0087
PHE 1970.0083
THR 1980.0042
ALA 1990.0047
GLN 2000.0031
PRO 2010.0042
ALA 2020.0099
ASP 2030.0092
MET 2040.0044
GLN 2050.0112
ALA 2060.0106
GLY 2070.0323
ILE 2080.0219
LYS 2090.0134
GLY 2100.0528
PRO 2110.0486
GLY 2120.0365
PRO 2130.0187
GLY 2140.0439
GLY 2150.0391
SER 2160.0410
ILE 2170.0310
GLN 2180.0274
VAL 2190.0399
ILE 2200.0360
ASN 2210.0414
GLY 2220.0342
SER 2230.0249
THR 2240.0159
ILE 2250.0117
GLY 2260.0204
THR 2270.0266
GLY 2280.0290
SER 2290.0287
LYS 2300.0170
LYS 2310.0082
THR 2320.0058
ILE 2330.0040
LEU 2340.0078
ILE 2350.0125
TYR 2360.0139
SER 2370.0162
ILE 2380.0150
ILE 2390.0133
GLY 2400.0138
VAL 2410.0089
LYS 2420.0076
LYS 2430.0082
GLY 2440.0078
THR 2450.0066
LEU 2460.0066
ALA 2470.0040
TRP 2480.0052
ALA 2490.0104
ARG 2500.0127
THR 2510.0167
GLY 2520.0158
PHE 2530.0150
SER 2540.0186
PRO 2550.0166
ALA 2560.0193
LYS 2570.0142
LYS 2580.0069
LEU 2590.0126
ASN 2600.0157
ALA 2610.0141
GLY 2620.0138
VAL 2630.0149
VAL 2640.0130
ARG 2650.0149
VAL 2660.0091
PHE 2670.0106
PHE 2680.0117
LEU 2690.0169
ASN 2700.0238
GLN 2710.0206
LYS 2720.0184
LYS 2730.0218
ALA 2740.0246
LYS 2750.0234
ASP 2760.0248
VAL 2770.0250
LEU 2780.0244
ARG 2790.0230
LYS 2800.0232
THR 2810.0209
SER 2820.0105
ARG 2830.0116
PRO 2840.0073
MET 2850.0063
VAL 2860.0224
ASP 2870.0314
LEU 2880.0168
THR 2890.0415
PHE 2900.0300
GLY 2910.0264
GLY 2920.0864

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.