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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 54  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0831
GLU 270.0084
PRO 280.0087
CYS 290.0082
VAL 300.0105
GLU 310.0109
VAL 320.0116
VAL 330.0109
PRO 340.0109
ASN 350.0085
ILE 360.0072
THR 370.0076
TYR 380.0072
GLN 390.0078
CYS 400.0060
MET 410.0071
GLU 420.0073
LEU 430.0062
ASN 440.0049
PHE 450.0032
TYR 460.0021
LYS 470.0011
ILE 480.0009
PRO 490.0030
ASP 500.0041
ASN 510.0063
LEU 520.0060
PRO 530.0064
PHE 540.0049
SER 550.0044
THR 560.0041
LYS 570.0035
ASN 580.0047
LEU 590.0041
ASP 600.0053
LEU 610.0043
SER 620.0058
PHE 630.0064
ASN 640.0049
PRO 650.0047
LEU 660.0038
ARG 670.0049
HIS 680.0045
LEU 690.0039
GLY 700.0039
SER 710.0039
TYR 720.0034
SER 730.0021
PHE 740.0013
PHE 750.0023
SER 760.0020
PHE 770.0012
PRO 780.0020
GLU 790.0008
LEU 800.0016
GLN 810.0033
VAL 820.0042
LEU 830.0040
ASP 840.0047
LEU 850.0047
SER 860.0057
ARG 870.0058
CYS 880.0052
GLU 890.0058
ILE 900.0054
GLN 910.0060
THR 920.0055
ILE 930.0050
GLU 940.0049
ASP 950.0051
GLY 960.0044
ALA 970.0040
TYR 980.0037
GLN 990.0041
SER 1000.0032
LEU 1010.0029
SER 1020.0041
HIS 1030.0037
LEU 1040.0040
SER 1050.0047
THR 1060.0050
LEU 1070.0050
ILE 1080.0049
LEU 1090.0049
THR 1100.0049
GLY 1110.0048
ASN 1120.0052
PRO 1130.0056
ILE 1140.0054
GLN 1150.0057
SER 1160.0055
LEU 1170.0054
ALA 1180.0054
LEU 1190.0054
GLY 1200.0051
ALA 1210.0050
PHE 1220.0050
SER 1230.0051
GLY 1240.0048
LEU 1250.0048
SER 1260.0052
SER 1270.0058
LEU 1280.0054
GLN 1290.0058
LYS 1300.0054
LEU 1310.0048
VAL 1320.0046
ALA 1330.0039
VAL 1340.0037
GLU 1350.0032
THR 1360.0031
ASN 1370.0021
LEU 1380.0021
ALA 1390.0011
SER 1400.0012
LEU 1410.0020
GLU 1420.0023
ASN 1430.0025
PHE 1440.0033
PRO 1450.0041
ILE 1460.0046
GLY 1470.0045
HIS 1480.0050
LEU 1490.0052
LYS 1500.0054
THR 1510.0058
LEU 1520.0053
LYS 1530.0055
GLU 1540.0050
LEU 1550.0042
ASN 1560.0041
VAL 1570.0031
ALA 1580.0036
HIS 1590.0037
ASN 1600.0026
LEU 1610.0023
ILE 1620.0027
GLN 1630.0030
SER 1640.0025
PHE 1650.0022
LYS 1660.0019
LEU 1670.0021
PRO 1680.0023
GLU 1690.0029
TYR 1700.0035
PHE 1710.0034
SER 1720.0040
ASN 1730.0046
LEU 1740.0045
THR 1750.0049
ASN 1760.0054
LEU 1770.0042
GLU 1780.0045
HIS 1790.0042
LEU 1800.0033
ASP 1810.0035
LEU 1820.0028
SER 1830.0039
SER 1840.0046
ASN 1850.0039
LYS 1860.0042
ILE 1870.0044
GLN 1880.0049
SER 1890.0043
ILE 1900.0034
TYR 1910.0036
CYS 1920.0031
THR 1930.0030
ASP 1940.0024
LEU 1950.0021
ARG 1960.0026
VAL 1970.0025
LEU 1980.0024
HIS 1990.0025
GLN 2000.0032
MET 2010.0033
PRO 2020.0030
LEU 2030.0036
LEU 2040.0031
ASN 2050.0034
LEU 2060.0029
SER 2070.0031
LEU 2080.0027
ASP 2090.0034
LEU 2100.0035
SER 2110.0045
LEU 2120.0054
ASN 2130.0051
PRO 2140.0057
MET 2150.0049
ASN 2160.0053
PHE 2170.0048
ILE 2180.0040
GLN 2190.0040
PRO 2200.0038
GLY 2210.0033
ALA 2220.0031
PHE 2230.0028
LYS 2240.0027
GLU 2250.0024
ILE 2260.0024
ARG 2270.0021
LEU 2280.0022
HIS 2290.0024
LYS 2300.0028
LEU 2310.0030
THR 2320.0039
LEU 2330.0042
ARG 2340.0047
ASN 2350.0053
ASN 2360.0053
PHE 2370.0054
ASP 2380.0059
SER 2390.0052
LEU 2400.0042
ASN 2410.0046
VAL 2420.0051
MET 2430.0043
LYS 2440.0038
THR 2450.0044
CYS 2460.0044
ILE 2470.0036
GLN 2480.0037
GLY 2490.0039
LEU 2500.0034
ALA 2510.0032
GLY 2520.0030
LEU 2530.0029
GLU 2540.0027
VAL 2550.0026
HIS 2560.0025
ARG 2570.0029
LEU 2580.0031
VAL 2590.0033
LEU 2600.0035
GLY 2610.0040
GLU 2620.0052
PHE 2630.0062
ARG 2640.0066
ASN 2650.0077
GLU 2660.0073
GLY 2670.0066
ASN 2680.0055
LEU 2690.0046
GLU 2700.0043
LYS 2710.0032
PHE 2720.0023
ASP 2730.0018
LYS 2740.0017
SER 2750.0023
ALA 2760.0024
LEU 2770.0023
GLU 2780.0026
GLY 2790.0032
LEU 2800.0028
CYS 2810.0030
ASN 2820.0031
LEU 2830.0031
THR 2840.0031
ILE 2850.0028
GLU 2860.0027
GLU 2870.0023
PHE 2880.0022
ARG 2890.0026
LEU 2900.0030
ALA 2910.0043
TYR 2920.0056
LEU 2930.0043
ASP 2940.0039
TYR 2950.0028
TYR 2960.0032
LEU 2970.0047
ASP 2980.0057
GLY 2990.0049
ILE 3000.0036
ILE 3010.0044
ASP 3020.0031
LEU 3030.0020
PHE 3040.0019
ASN 3050.0029
CYS 3060.0030
LEU 3070.0023
THR 3080.0031
ASN 3090.0035
VAL 3100.0028
SER 3110.0027
SER 3120.0020
PHE 3130.0012
SER 3140.0023
LEU 3150.0033
VAL 3160.0050
SER 3170.0069
VAL 3180.0059
THR 3190.0068
ILE 3200.0065
GLU 3210.0079
ARG 3220.0082
VAL 3230.0071
LYS 3240.0079
ASP 3250.0063
PHE 3260.0053
SER 3270.0068
TYR 3280.0059
ASN 3290.0057
PHE 3300.0040
GLY 3310.0042
TRP 3320.0024
GLN 3330.0024
HIS 3340.0012
LEU 3350.0010
GLU 3360.0022
LEU 3370.0050
VAL 3380.0071
ASN 3390.0092
CYS 3400.0083
LYS 3410.0099
PHE 3420.0100
GLY 3430.0116
GLN 3440.0110
PHE 3450.0095
PRO 3460.0079
THR 3470.0077
LEU 3480.0057
LYS 3490.0062
LEU 3500.0047
LYS 3510.0059
SER 3520.0041
LEU 3530.0025
LYS 3540.0024
ARG 3550.0007
LEU 3560.0010
THR 3570.0029
PHE 3580.0051
THR 3590.0075
SER 3600.0105
ASN 3610.0105
LYS 3620.0129
GLY 3630.0134
GLY 3640.0132
ASN 3650.0121
ALA 3660.0121
PHE 3670.0103
SER 3680.0105
GLU 3690.0093
VAL 3700.0070
ASP 3710.0069
LEU 3720.0043
PRO 3730.0056
SER 3740.0046
LEU 3750.0027
GLU 3760.0028
PHE 3770.0014
LEU 3780.0013
ASP 3790.0035
LEU 3800.0053
SER 3810.0070
ARG 3820.0108
ASN 3830.0115
GLY 3840.0131
LEU 3850.0117
SER 3860.0129
PHE 3870.0114
LYS 3880.0131
GLY 3890.0121
CYS 3900.0091
CYS 3910.0077
SER 3920.0079
GLN 3930.0076
SER 3940.0095
ASP 3950.0081
PHE 3960.0058
GLY 3970.0056
THR 3980.0047
ILE 3990.0054
SER 4000.0049
LEU 4010.0031
LYS 4020.0037
TYR 4030.0018
LEU 4040.0015
ASP 4050.0040
LEU 4060.0058
SER 4070.0079
PHE 4080.0111
ASN 4090.0115
GLY 4100.0137
VAL 4110.0135
ILE 4120.0108
THR 4130.0118
MET 4140.0102
SER 4150.0120
SER 4160.0107
ASN 4170.0082
PHE 4180.0068
LEU 4190.0092
GLY 4200.0086
LEU 4210.0059
GLU 4220.0070
GLN 4230.0063
LEU 4240.0038
GLU 4250.0044
HIS 4260.0029
LEU 4270.0012
ASP 4280.0040
PHE 4290.0059
GLN 4300.0078
HIS 4310.0105
SER 4320.0102
ASN 4330.0114
LEU 4340.0096
LYS 4350.0112
GLN 4360.0112
MET 4370.0075
SER 4380.0080
GLU 4390.0104
PHE 4400.0095
SER 4410.0075
VAL 4420.0068
PHE 4430.0051
LEU 4440.0072
SER 4450.0076
LEU 4460.0055
ARG 4470.0073
ASN 4480.0067
LEU 4490.0043
ILE 4500.0050
TYR 4510.0036
LEU 4520.0019
ASP 4530.0037
ILE 4540.0042
SER 4550.0061
HIS 4560.0081
THR 4570.0082
HIS 4580.0089
THR 4590.0066
ARG 4600.0061
VAL 4610.0039
ALA 4620.0051
PHE 4630.0051
ASN 4640.0042
GLY 4650.0051
ILE 4660.0039
PHE 4670.0031
ASN 4680.0050
GLY 4690.0056
LEU 4700.0043
SER 4710.0060
SER 4720.0060
LEU 4730.0044
GLU 4740.0052
VAL 4750.0043
LEU 4760.0029
LYS 4770.0037
MET 4780.0033
ALA 4790.0051
GLY 4800.0061
ASN 4810.0048
SER 4820.0043
PHE 4830.0021
GLN 4840.0016
GLU 4850.0013
ASN 4860.0032
PHE 4870.0031
LEU 4880.0029
PRO 4890.0025
ASP 4900.0025
ILE 4910.0021
PHE 4920.0027
THR 4930.0034
GLU 4940.0040
LEU 4950.0037
ARG 4960.0048
ASN 4970.0051
LEU 4980.0044
THR 4990.0051
PHE 5000.0044
LEU 5010.0037
ASP 5020.0039
LEU 5030.0036
SER 5040.0046
GLN 5050.0046
CYS 5060.0035
GLN 5070.0046
LEU 5080.0045
GLU 5090.0049
GLN 5100.0047
LEU 5110.0044
SER 5120.0040
PRO 5130.0041
THR 5140.0036
ALA 5150.0035
PHE 5160.0033
ASN 5170.0033
SER 5180.0034
LEU 5190.0035
SER 5200.0038
SER 5210.0041
LEU 5220.0036
GLN 5230.0037
VAL 5240.0037
LEU 5250.0038
ASN 5260.0038
MET 5270.0043
SER 5280.0045
HIS 5290.0050
ASN 5300.0053
ASN 5310.0059
PHE 5320.0065
PHE 5330.0067
SER 5340.0058
LEU 5350.0046
ASP 5360.0055
THR 5370.0043
PHE 5380.0052
PRO 5390.0048
TYR 5400.0037
LYS 5410.0043
CYS 5420.0034
LEU 5430.0030
ASN 5440.0029
SER 5450.0026
LEU 5460.0026
GLN 5470.0018
VAL 5480.0020
LEU 5490.0026
ASP 5500.0031
TYR 5510.0038
SER 5520.0040
LEU 5530.0057
ASN 5540.0060
HIS 5550.0065
ILE 5560.0052
MET 5570.0052
THR 5580.0046
SER 5590.0051
LYS 5600.0075
LYS 5610.0087
GLN 5620.0080
GLU 5630.0071
LEU 5640.0055
GLN 5650.0065
HIS 5660.0056
PHE 5670.0036
PRO 5680.0034
SER 5690.0039
SER 5700.0030
LEU 5710.0024
ALA 5720.0023
PHE 5730.0018
LEU 5740.0011
ASN 5750.0025
LEU 5760.0024
THR 5770.0048
GLN 5780.0068
ASN 5790.0059
ASP 5800.0068
PHE 5810.0048
ALA 5820.0054
CYS 5830.0047
THR 5840.0030
CYS 5850.0011
GLU 5860.0032
HIS 5870.0023
GLN 5880.0032
SER 5890.0053
PHE 5900.0029
LEU 5910.0026
GLN 5920.0058
TRP 5930.0052
ILE 5940.0040
LYS 5950.0076
ASP 5960.0085
GLN 5970.0066
ARG 5980.0070
GLN 5990.0075
LEU 6000.0046
LEU 6010.0044
VAL 6020.0054
GLU 6030.0076
VAL 6040.0076
GLU 6050.0098
ARG 6060.0091
MET 6070.0073
GLU 6080.0093
CYS 6090.0085
ALA 6100.0105
THR 6110.0101
PRO 6120.0109
SER 6130.0153
ASP 6140.0155
LYS 6150.0129
GLN 6160.0142
GLY 6170.0143
MET 6180.0127
PRO 6190.0111
VAL 6200.0075
LEU 6210.0092
SER 6220.0125
LEU 6230.0101
ASN 6240.0108
ILE 6250.0088
THR 6260.0098
CYS 6270.0097
GLU 10.0391
ALA 20.0361
ALA 30.0376
ALA 40.0197
LYS 50.0097
MET 60.0253
GLN 70.0160
ARG 80.0158
LEU 90.0318
VAL 100.0369
LEU 110.0297
LEU 120.0377
LEU 130.0396
ALA 140.0327
ILE 150.0353
SER 160.0312
LEU 170.0255
LEU 180.0238
LEU 190.0240
TYR 200.0172
GLN 210.0108
ASP 220.0139
LEU 230.0113
PRO 240.0086
VAL 250.0031
ARG 260.0056
SER 270.0043
GLU 280.0038
PHE 290.0035
GLU 300.0034
LEU 310.0013
ASP 320.0011
ARG 330.0018
ILE 340.0020
CYS 350.0024
GLY 360.0033
TYR 370.0023
GLY 380.0019
THR 390.0026
ALA 400.0041
ARG 410.0028
CYS 420.0029
ARG 430.0047
LYS 440.0069
LYS 450.0081
CYS 460.0079
ARG 470.0076
SER 480.0088
GLN 490.0079
GLU 500.0077
TYR 510.0087
ARG 520.0083
ILE 530.0079
GLY 540.0071
ARG 550.0060
CYS 560.0043
PRO 570.0035
ASN 580.0042
THR 590.0057
TYR 600.0057
ALA 610.0061
CYS 620.0052
CYS 630.0057
LEU 640.0060
ARG 650.0064
LYS 660.0091
TRP 670.0087
ASP 680.0074
GLU 690.0072
SER 700.0061
LEU 710.0069
LEU 720.0081
ASN 730.0066
ARG 740.0063
THR 750.0082
LYS 760.0096
PRO 770.0098
GLU 780.0082
ALA 790.0096
ALA 800.0115
ALA 810.0230
LYS 820.0221
LYS 830.0192
GLU 840.0178
MET 850.0157
ASN 860.0114
LEU 870.0088
SER 880.0052
VAL 890.0027
GLY 900.0024
LEU 910.0047
GLY 920.0081
GLY 930.0110
GLY 940.0090
SER 950.0083
ASN 960.0064
LEU 970.0061
SER 980.0088
VAL 990.0104
GLY 1000.0141
LEU 1010.0136
GLY 1020.0109
GLU 1030.0193
ILE 1040.0257
GLY 1050.0376
GLY 1060.0487
GLY 1070.0374
SER 1080.0278
LYS 1090.0154
LEU 1100.0111
LEU 1110.0079
ASP 1120.0053
ILE 1130.0032
ASN 1140.0014
LEU 1150.0021
GLY 1160.0061
ARG 1170.0075
GLY 1180.0087
GLY 1190.0091
GLY 1200.0093
SER 1210.0066
MET 1220.0058
VAL 1230.0031
ASP 1240.0066
LEU 1250.0082
THR 1260.0095
PHE 1270.0128
GLY 1280.0133
GLY 1290.0171
VAL 1300.0199
GLY 1310.0218
GLY 1320.0198
GLY 1330.0180
SER 1340.0169
THR 1350.0152
PHE 1360.0153
THR 1370.0125
PHE 1380.0101
PHE 1390.0075
PRO 1400.0051
LEU 1410.0049
VAL 1420.0039
ILE 1430.0044
GLY 1440.0036
GLY 1450.0036
GLY 1460.0028
SER 1470.0034
ASP 1480.0029
ALA 1490.0046
MET 1500.0056
TYR 1510.0092
LEU 1520.0098
GLY 1530.0111
PHE 1540.0117
ALA 1550.0130
ALA 1560.0137
GLY 1570.0134
GLY 1580.0133
GLY 1590.0134
SER 1600.0138
ALA 1610.0191
GLY 1620.0189
GLY 1630.0178
GLU 1640.0165
ASN 1650.0155
HIS 1660.0121
VAL 1670.0083
ALA 1680.0072
PHE 1690.0046
GLY 1700.0083
PRO 1710.0320
GLY 1720.0355
PRO 1730.0335
GLY 1740.0191
VAL 1750.0054
ASP 1760.0102
LEU 1770.0115
THR 1780.0168
PHE 1790.0211
GLY 1800.0266
GLY 1810.0308
VAL 1820.0288
GLN 1830.0226
PHE 1840.0173
ALA 1850.0147
MET 1860.0113
VAL 1870.0301
ASN 1880.0478
ASN 1890.0666
GLY 1900.0831
PRO 1910.0578
GLY 1920.0610
PRO 1930.0539
GLY 1940.0438
GLU 1950.0143
SER 1960.0220
PHE 1970.0301
THR 1980.0152
ALA 1990.0188
GLN 2000.0210
PRO 2010.0031
ALA 2020.0224
ASP 2030.0285
MET 2040.0234
GLN 2050.0091
ALA 2060.0167
GLY 2070.0224
ILE 2080.0144
LYS 2090.0073
GLY 2100.0373
PRO 2110.0499
GLY 2120.0153
PRO 2130.0316
GLY 2140.0472
GLY 2150.0219
SER 2160.0152
ILE 2170.0106
GLN 2180.0098
VAL 2190.0083
ILE 2200.0083
ASN 2210.0151
GLY 2220.0129
SER 2230.0120
THR 2240.0139
ILE 2250.0152
GLY 2260.0150
THR 2270.0112
GLY 2280.0086
SER 2290.0107
LYS 2300.0096
LYS 2310.0155
THR 2320.0135
ILE 2330.0077
LEU 2340.0053
ILE 2350.0056
TYR 2360.0105
SER 2370.0141
ILE 2380.0165
ILE 2390.0123
GLY 2400.0169
VAL 2410.0146
LYS 2420.0124
LYS 2430.0140
GLY 2440.0151
THR 2450.0134
LEU 2460.0178
ALA 2470.0109
TRP 2480.0087
ALA 2490.0099
ARG 2500.0125
THR 2510.0187
GLY 2520.0180
PHE 2530.0183
SER 2540.0184
PRO 2550.0196
ALA 2560.0247
LYS 2570.0250
LYS 2580.0212
LEU 2590.0244
ASN 2600.0374
ALA 2610.0483
GLY 2620.0331
VAL 2630.0335
VAL 2640.0224
ARG 2650.0212
VAL 2660.0165
PHE 2670.0186
PHE 2680.0222
LEU 2690.0254
ASN 2700.0357
GLN 2710.0261
LYS 2720.0230
LYS 2730.0267
ALA 2740.0263
LYS 2750.0204
ASP 2760.0226
VAL 2770.0206
LEU 2780.0143
ARG 2790.0131
LYS 2800.0187
THR 2810.0173
SER 2820.0136
ARG 2830.0067
PRO 2840.0198
MET 2850.0275
VAL 2860.0276
ASP 2870.0195
LEU 2880.0155
THR 2890.0073
PHE 2900.0118
GLY 2910.0055
GLY 2920.0148

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.