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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 56  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0907
GLU 270.0110
PRO 280.0124
CYS 290.0096
VAL 300.0103
GLU 310.0085
VAL 320.0091
VAL 330.0067
PRO 340.0049
ASN 350.0030
ILE 360.0036
THR 370.0050
TYR 380.0054
GLN 390.0076
CYS 400.0071
MET 410.0088
GLU 420.0103
LEU 430.0105
ASN 440.0100
PHE 450.0077
TYR 460.0073
LYS 470.0060
ILE 480.0047
PRO 490.0062
ASP 500.0077
ASN 510.0086
LEU 520.0061
PRO 530.0053
PHE 540.0065
SER 550.0050
THR 560.0031
LYS 570.0047
ASN 580.0049
LEU 590.0035
ASP 600.0051
LEU 610.0044
SER 620.0063
PHE 630.0076
ASN 640.0063
PRO 650.0058
LEU 660.0035
ARG 670.0029
HIS 680.0024
LEU 690.0026
GLY 700.0035
SER 710.0046
TYR 720.0055
SER 730.0041
PHE 740.0043
PHE 750.0063
SER 760.0063
PHE 770.0051
PRO 780.0072
GLU 790.0066
LEU 800.0053
GLN 810.0067
VAL 820.0059
LEU 830.0047
ASP 840.0051
LEU 850.0043
SER 860.0058
ARG 870.0054
CYS 880.0040
GLU 890.0042
ILE 900.0031
GLN 910.0031
THR 920.0028
ILE 930.0032
GLU 940.0035
ASP 950.0045
GLY 960.0049
ALA 970.0041
TYR 980.0048
GLN 990.0063
SER 1000.0065
LEU 1010.0061
SER 1020.0076
HIS 1030.0077
LEU 1040.0065
SER 1050.0074
THR 1060.0066
LEU 1070.0059
ILE 1080.0057
LEU 1090.0052
THR 1100.0056
GLY 1110.0053
ASN 1120.0046
PRO 1130.0046
ILE 1140.0043
GLN 1150.0041
SER 1160.0039
LEU 1170.0042
ALA 1180.0043
LEU 1190.0048
GLY 1200.0048
ALA 1210.0045
PHE 1220.0053
SER 1230.0058
GLY 1240.0062
LEU 1250.0062
SER 1260.0074
SER 1270.0072
LEU 1280.0065
GLN 1290.0072
LYS 1300.0067
LEU 1310.0058
VAL 1320.0057
ALA 1330.0054
VAL 1340.0054
GLU 1350.0052
THR 1360.0052
ASN 1370.0041
LEU 1380.0042
ALA 1390.0042
SER 1400.0043
LEU 1410.0044
GLU 1420.0042
ASN 1430.0042
PHE 1440.0046
PRO 1450.0048
ILE 1460.0052
GLY 1470.0044
HIS 1480.0050
LEU 1490.0054
LYS 1500.0053
THR 1510.0059
LEU 1520.0054
LYS 1530.0056
GLU 1540.0056
LEU 1550.0052
ASN 1560.0052
VAL 1570.0046
ALA 1580.0046
HIS 1590.0048
ASN 1600.0045
LEU 1610.0041
ILE 1620.0038
GLN 1630.0035
SER 1640.0029
PHE 1650.0027
LYS 1660.0022
LEU 1670.0029
PRO 1680.0031
GLU 1690.0031
TYR 1700.0038
PHE 1710.0034
SER 1720.0030
ASN 1730.0038
LEU 1740.0040
THR 1750.0039
ASN 1760.0044
LEU 1770.0041
GLU 1780.0041
HIS 1790.0043
LEU 1800.0041
ASP 1810.0044
LEU 1820.0037
SER 1830.0042
SER 1840.0049
ASN 1850.0045
LYS 1860.0044
ILE 1870.0047
GLN 1880.0051
SER 1890.0044
ILE 1900.0033
TYR 1910.0034
CYS 1920.0022
THR 1930.0014
ASP 1940.0017
LEU 1950.0008
ARG 1960.0004
VAL 1970.0013
LEU 1980.0009
HIS 1990.0006
GLN 2000.0016
MET 2010.0017
PRO 2020.0013
LEU 2030.0019
LEU 2040.0019
ASN 2050.0019
LEU 2060.0021
SER 2070.0025
LEU 2080.0026
ASP 2090.0034
LEU 2100.0035
SER 2110.0043
LEU 2120.0053
ASN 2130.0052
PRO 2140.0062
MET 2150.0054
ASN 2160.0063
PHE 2170.0060
ILE 2180.0049
GLN 2190.0050
PRO 2200.0052
GLY 2210.0045
ALA 2220.0034
PHE 2230.0029
LYS 2240.0035
GLU 2250.0030
ILE 2260.0018
ARG 2270.0012
LEU 2280.0004
HIS 2290.0006
LYS 2300.0011
LEU 2310.0020
THR 2320.0027
LEU 2330.0037
ARG 2340.0044
ASN 2350.0057
ASN 2360.0060
PHE 2370.0074
ASP 2380.0093
SER 2390.0091
LEU 2400.0081
ASN 2410.0093
VAL 2420.0084
MET 2430.0067
LYS 2440.0071
THR 2450.0078
CYS 2460.0062
ILE 2470.0056
GLN 2480.0066
GLY 2490.0059
LEU 2500.0045
ALA 2510.0053
GLY 2520.0046
LEU 2530.0033
GLU 2540.0028
VAL 2550.0018
HIS 2560.0014
ARG 2570.0007
LEU 2580.0015
VAL 2590.0021
LEU 2600.0030
GLY 2610.0037
GLU 2620.0052
PHE 2630.0065
ARG 2640.0080
ASN 2650.0090
GLU 2660.0084
GLY 2670.0095
ASN 2680.0079
LEU 2690.0074
GLU 2700.0086
LYS 2710.0075
PHE 2720.0056
ASP 2730.0060
LYS 2740.0058
SER 2750.0068
ALA 2760.0056
LEU 2770.0051
GLU 2780.0065
GLY 2790.0064
LEU 2800.0049
CYS 2810.0061
ASN 2820.0059
LEU 2830.0047
THR 2840.0042
ILE 2850.0032
GLU 2860.0029
GLU 2870.0019
PHE 2880.0017
ARG 2890.0017
LEU 2900.0022
ALA 2910.0033
TYR 2920.0045
LEU 2930.0041
ASP 2940.0049
TYR 2950.0042
TYR 2960.0029
LEU 2970.0021
ASP 2980.0019
GLY 2990.0024
ILE 3000.0024
ILE 3010.0036
ASP 3020.0051
LEU 3030.0039
PHE 3040.0036
ASN 3050.0051
CYS 3060.0051
LEU 3070.0042
THR 3080.0050
ASN 3090.0052
VAL 3100.0041
SER 3110.0041
SER 3120.0033
PHE 3130.0030
SER 3140.0031
LEU 3150.0034
VAL 3160.0047
SER 3170.0059
VAL 3180.0047
THR 3190.0049
ILE 3200.0041
GLU 3210.0047
ARG 3220.0051
VAL 3230.0057
LYS 3240.0065
ASP 3250.0049
PHE 3260.0054
SER 3270.0061
TYR 3280.0054
ASN 3290.0060
PHE 3300.0049
GLY 3310.0053
TRP 3320.0045
GLN 3330.0047
HIS 3340.0042
LEU 3350.0044
GLU 3360.0049
LEU 3370.0062
VAL 3380.0076
ASN 3390.0091
CYS 3400.0083
LYS 3410.0092
PHE 3420.0095
GLY 3430.0102
GLN 3440.0103
PHE 3450.0099
PRO 3460.0084
THR 3470.0082
LEU 3480.0069
LYS 3490.0069
LEU 3500.0057
LYS 3510.0063
SER 3520.0055
LEU 3530.0049
LYS 3540.0050
ARG 3550.0047
LEU 3560.0053
THR 3570.0060
PHE 3580.0076
THR 3590.0089
SER 3600.0107
ASN 3610.0109
LYS 3620.0126
GLY 3630.0130
GLY 3640.0130
ASN 3650.0125
ALA 3660.0129
PHE 3670.0120
SER 3680.0120
GLU 3690.0109
VAL 3700.0087
ASP 3710.0082
LEU 3720.0059
PRO 3730.0064
SER 3740.0053
LEU 3750.0048
GLU 3760.0045
PHE 3770.0038
LEU 3780.0051
ASP 3790.0061
LEU 3800.0078
SER 3810.0088
ARG 3820.0111
ASN 3830.0121
GLY 3840.0137
LEU 3850.0130
SER 3860.0143
PHE 3870.0135
LYS 3880.0154
GLY 3890.0147
CYS 3900.0119
CYS 3910.0106
SER 3920.0106
GLN 3930.0099
SER 3940.0117
ASP 3950.0106
PHE 3960.0082
GLY 3970.0074
THR 3980.0062
ILE 3990.0067
SER 4000.0054
LEU 4010.0043
LYS 4020.0042
TYR 4030.0029
LEU 4040.0042
ASP 4050.0053
LEU 4060.0076
SER 4070.0084
PHE 4080.0112
ASN 4090.0123
GLY 4100.0146
VAL 4110.0149
ILE 4120.0130
THR 4130.0145
MET 4140.0132
SER 4150.0153
SER 4160.0140
ASN 4170.0118
PHE 4180.0100
LEU 4190.0122
GLY 4200.0110
LEU 4210.0083
GLU 4220.0092
GLN 4230.0076
LEU 4240.0051
GLU 4250.0044
HIS 4260.0019
LEU 4270.0026
ASP 4280.0041
PHE 4290.0066
GLN 4300.0074
HIS 4310.0102
SER 4320.0110
ASN 4330.0129
LEU 4340.0115
LYS 4350.0138
GLN 4360.0144
MET 4370.0106
SER 4380.0114
GLU 4390.0141
PHE 4400.0133
SER 4410.0110
VAL 4420.0102
PHE 4430.0082
LEU 4440.0105
SER 4450.0107
LEU 4460.0080
ARG 4470.0090
ASN 4480.0080
LEU 4490.0051
ILE 4500.0045
TYR 4510.0020
LEU 4520.0009
ASP 4530.0028
ILE 4540.0047
SER 4550.0059
HIS 4560.0084
THR 4570.0091
HIS 4580.0104
THR 4590.0084
ARG 4600.0083
VAL 4610.0063
ALA 4620.0081
PHE 4630.0081
ASN 4640.0066
GLY 4650.0079
ILE 4660.0068
PHE 4670.0052
ASN 4680.0072
GLY 4690.0079
LEU 4700.0059
SER 4710.0073
SER 4720.0066
LEU 4730.0043
GLU 4740.0046
VAL 4750.0031
LEU 4760.0012
LYS 4770.0025
MET 4780.0031
ALA 4790.0048
GLY 4800.0063
ASN 4810.0056
SER 4820.0051
PHE 4830.0035
GLN 4840.0045
GLU 4850.0040
ASN 4860.0039
PHE 4870.0023
LEU 4880.0013
PRO 4890.0005
ASP 4900.0014
ILE 4910.0017
PHE 4920.0016
THR 4930.0030
GLU 4940.0045
LEU 4950.0040
ARG 4960.0054
ASN 4970.0053
LEU 4980.0040
THR 4990.0054
PHE 5000.0045
LEU 5010.0033
ASP 5020.0035
LEU 5030.0034
SER 5040.0043
GLN 5050.0046
CYS 5060.0039
GLN 5070.0039
LEU 5080.0038
GLU 5090.0045
GLN 5100.0042
LEU 5110.0040
SER 5120.0036
PRO 5130.0045
THR 5140.0038
ALA 5150.0032
PHE 5160.0039
ASN 5170.0039
SER 5180.0039
LEU 5190.0043
SER 5200.0056
SER 5210.0058
LEU 5220.0051
GLN 5230.0058
VAL 5240.0054
LEU 5250.0050
ASN 5260.0048
MET 5270.0047
SER 5280.0045
HIS 5290.0044
ASN 5300.0047
ASN 5310.0050
PHE 5320.0064
PHE 5330.0067
SER 5340.0067
LEU 5350.0063
ASP 5360.0074
THR 5370.0071
PHE 5380.0077
PRO 5390.0070
TYR 5400.0068
LYS 5410.0077
CYS 5420.0066
LEU 5430.0063
ASN 5440.0069
SER 5450.0065
LEU 5460.0062
GLN 5470.0059
VAL 5480.0053
LEU 5490.0054
ASP 5500.0049
TYR 5510.0051
SER 5520.0042
LEU 5530.0047
ASN 5540.0058
HIS 5550.0064
ILE 5560.0061
MET 5570.0074
THR 5580.0069
SER 5590.0069
LYS 5600.0086
LYS 5610.0092
GLN 5620.0083
GLU 5630.0084
LEU 5640.0071
GLN 5650.0080
HIS 5660.0083
PHE 5670.0071
PRO 5680.0073
SER 5690.0077
SER 5700.0071
LEU 5710.0065
ALA 5720.0046
PHE 5730.0041
LEU 5740.0042
ASN 5750.0039
LEU 5760.0041
THR 5770.0036
GLN 5780.0055
ASN 5790.0065
ASP 5800.0081
PHE 5810.0070
ALA 5820.0104
CYS 5830.0101
THR 5840.0114
CYS 5850.0099
GLU 5860.0097
HIS 5870.0067
GLN 5880.0049
SER 5890.0026
PHE 5900.0033
LEU 5910.0040
GLN 5920.0042
TRP 5930.0031
ILE 5940.0033
LYS 5950.0054
ASP 5960.0057
GLN 5970.0044
ARG 5980.0045
GLN 5990.0051
LEU 6000.0040
LEU 6010.0033
VAL 6020.0027
GLU 6030.0033
VAL 6040.0042
GLU 6050.0060
ARG 6060.0058
MET 6070.0058
GLU 6080.0092
CYS 6090.0109
ALA 6100.0136
THR 6110.0153
PRO 6120.0183
SER 6130.0221
ASP 6140.0226
LYS 6150.0179
GLN 6160.0178
GLY 6170.0151
MET 6180.0137
PRO 6190.0104
VAL 6200.0081
LEU 6210.0080
SER 6220.0120
LEU 6230.0122
ASN 6240.0145
ILE 6250.0114
THR 6260.0144
CYS 6270.0178
GLU 10.0269
ALA 20.0226
ALA 30.0263
ALA 40.0141
LYS 50.0049
MET 60.0176
GLN 70.0121
ARG 80.0110
LEU 90.0225
VAL 100.0264
LEU 110.0210
LEU 120.0258
LEU 130.0271
ALA 140.0223
ILE 150.0232
SER 160.0192
LEU 170.0155
LEU 180.0148
LEU 190.0149
TYR 200.0105
GLN 210.0084
ASP 220.0088
LEU 230.0092
PRO 240.0099
VAL 250.0104
ARG 260.0104
SER 270.0084
GLU 280.0067
PHE 290.0056
GLU 300.0052
LEU 310.0054
ASP 320.0048
ARG 330.0036
ILE 340.0047
CYS 350.0061
GLY 360.0053
TYR 370.0052
GLY 380.0045
THR 390.0045
ALA 400.0046
ARG 410.0038
CYS 420.0070
ARG 430.0081
LYS 440.0115
LYS 450.0107
CYS 460.0059
ARG 470.0061
SER 480.0067
GLN 490.0051
GLU 500.0026
TYR 510.0038
ARG 520.0067
ILE 530.0075
GLY 540.0114
ARG 550.0140
CYS 560.0124
PRO 570.0149
ASN 580.0144
THR 590.0164
TYR 600.0131
ALA 610.0096
CYS 620.0073
CYS 630.0048
LEU 640.0026
ARG 650.0012
LYS 660.0048
TRP 670.0050
ASP 680.0050
GLU 690.0062
SER 700.0055
LEU 710.0055
LEU 720.0063
ASN 730.0056
ARG 740.0051
THR 750.0060
LYS 760.0040
PRO 770.0049
GLU 780.0057
ALA 790.0068
ALA 800.0066
ALA 810.0196
LYS 820.0205
LYS 830.0198
GLU 840.0216
MET 850.0210
ASN 860.0174
LEU 870.0128
SER 880.0095
VAL 890.0044
GLY 900.0046
LEU 910.0064
GLY 920.0121
GLY 930.0178
GLY 940.0172
SER 950.0120
ASN 960.0093
LEU 970.0062
SER 980.0117
VAL 990.0139
GLY 1000.0197
LEU 1010.0188
GLY 1020.0210
GLU 1030.0231
ILE 1040.0242
GLY 1050.0263
GLY 1060.0242
GLY 1070.0220
SER 1080.0183
LYS 1090.0166
LEU 1100.0158
LEU 1110.0157
ASP 1120.0117
ILE 1130.0059
ASN 1140.0036
LEU 1150.0055
GLY 1160.0162
ARG 1170.0282
GLY 1180.0277
GLY 1190.0250
GLY 1200.0151
SER 1210.0067
MET 1220.0054
VAL 1230.0041
ASP 1240.0034
LEU 1250.0046
THR 1260.0049
PHE 1270.0077
GLY 1280.0086
GLY 1290.0090
VAL 1300.0124
GLY 1310.0118
GLY 1320.0128
GLY 1330.0122
SER 1340.0129
THR 1350.0125
PHE 1360.0123
THR 1370.0136
PHE 1380.0119
PHE 1390.0139
PRO 1400.0131
LEU 1410.0180
VAL 1420.0218
ILE 1430.0243
GLY 1440.0309
GLY 1450.0337
GLY 1460.0309
SER 1470.0234
ASP 1480.0164
ALA 1490.0145
MET 1500.0123
TYR 1510.0125
LEU 1520.0120
GLY 1530.0145
PHE 1540.0146
ALA 1550.0172
ALA 1560.0166
GLY 1570.0123
GLY 1580.0079
GLY 1590.0081
SER 1600.0085
ALA 1610.0113
GLY 1620.0088
GLY 1630.0058
GLU 1640.0045
ASN 1650.0056
HIS 1660.0047
VAL 1670.0058
ALA 1680.0059
PHE 1690.0068
GLY 1700.0075
PRO 1710.0158
GLY 1720.0163
PRO 1730.0131
GLY 1740.0060
VAL 1750.0059
ASP 1760.0079
LEU 1770.0077
THR 1780.0074
PHE 1790.0078
GLY 1800.0080
GLY 1810.0106
VAL 1820.0102
GLN 1830.0090
PHE 1840.0082
ALA 1850.0078
MET 1860.0131
VAL 1870.0375
ASN 1880.0513
ASN 1890.0800
GLY 1900.0907
PRO 1910.0691
GLY 1920.0713
PRO 1930.0603
GLY 1940.0460
GLU 1950.0123
SER 1960.0179
PHE 1970.0279
THR 1980.0086
ALA 1990.0194
GLN 2000.0148
PRO 2010.0018
ALA 2020.0228
ASP 2030.0330
MET 2040.0233
GLN 2050.0084
ALA 2060.0042
GLY 2070.0081
ILE 2080.0168
LYS 2090.0208
GLY 2100.0280
PRO 2110.0427
GLY 2120.0141
PRO 2130.0347
GLY 2140.0437
GLY 2150.0166
SER 2160.0167
ILE 2170.0150
GLN 2180.0118
VAL 2190.0238
ILE 2200.0142
ASN 2210.0103
GLY 2220.0085
SER 2230.0051
THR 2240.0074
ILE 2250.0100
GLY 2260.0211
THR 2270.0213
GLY 2280.0162
SER 2290.0094
LYS 2300.0051
LYS 2310.0029
THR 2320.0026
ILE 2330.0060
LEU 2340.0069
ILE 2350.0123
TYR 2360.0082
SER 2370.0054
ILE 2380.0090
ILE 2390.0071
GLY 2400.0123
VAL 2410.0136
LYS 2420.0125
LYS 2430.0136
GLY 2440.0144
THR 2450.0136
LEU 2460.0162
ALA 2470.0125
TRP 2480.0132
ALA 2490.0121
ARG 2500.0143
THR 2510.0142
GLY 2520.0102
PHE 2530.0073
SER 2540.0069
PRO 2550.0082
ALA 2560.0144
LYS 2570.0162
LYS 2580.0236
LEU 2590.0274
ASN 2600.0345
ALA 2610.0380
GLY 2620.0249
VAL 2630.0214
VAL 2640.0106
ARG 2650.0197
VAL 2660.0210
PHE 2670.0119
PHE 2680.0061
LEU 2690.0069
ASN 2700.0153
GLN 2710.0131
LYS 2720.0134
LYS 2730.0139
ALA 2740.0121
LYS 2750.0104
ASP 2760.0127
VAL 2770.0132
LEU 2780.0089
ARG 2790.0106
LYS 2800.0151
THR 2810.0161
SER 2820.0135
ARG 2830.0091
PRO 2840.0133
MET 2850.0155
VAL 2860.0370
ASP 2870.0299
LEU 2880.0034
THR 2890.0306
PHE 2900.0211
GLY 2910.0172
GLY 2920.0663

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.