CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 58  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0582
GLU 270.0048
PRO 280.0042
CYS 290.0028
VAL 300.0055
GLU 310.0077
VAL 320.0115
VAL 330.0135
PRO 340.0132
ASN 350.0123
ILE 360.0109
THR 370.0087
TYR 380.0051
GLN 390.0068
CYS 400.0060
MET 410.0106
GLU 420.0136
LEU 430.0123
ASN 440.0147
PHE 450.0122
TYR 460.0148
LYS 470.0130
ILE 480.0088
PRO 490.0068
ASP 500.0090
ASN 510.0082
LEU 520.0062
PRO 530.0090
PHE 540.0097
SER 550.0097
THR 560.0061
LYS 570.0064
ASN 580.0061
LEU 590.0038
ASP 600.0067
LEU 610.0077
SER 620.0109
PHE 630.0137
ASN 640.0128
PRO 650.0149
LEU 660.0127
ARG 670.0130
HIS 680.0123
LEU 690.0103
GLY 700.0108
SER 710.0097
TYR 720.0086
SER 730.0085
PHE 740.0053
PHE 750.0067
SER 760.0066
PHE 770.0041
PRO 780.0050
GLU 790.0047
LEU 800.0020
GLN 810.0046
VAL 820.0052
LEU 830.0049
ASP 840.0071
LEU 850.0084
SER 860.0108
ARG 870.0121
CYS 880.0114
GLU 890.0129
ILE 900.0115
GLN 910.0124
THR 920.0121
ILE 930.0105
GLU 940.0105
ASP 950.0097
GLY 960.0080
ALA 970.0082
TYR 980.0057
GLN 990.0054
SER 1000.0038
LEU 1010.0019
SER 1020.0018
HIS 1030.0017
LEU 1040.0029
SER 1050.0052
THR 1060.0060
LEU 1070.0062
ILE 1080.0071
LEU 1090.0079
THR 1100.0089
GLY 1110.0098
ASN 1120.0101
PRO 1130.0108
ILE 1140.0101
GLN 1150.0105
SER 1160.0097
LEU 1170.0110
ALA 1180.0108
LEU 1190.0101
GLY 1200.0088
ALA 1210.0088
PHE 1220.0078
SER 1230.0073
GLY 1240.0054
LEU 1250.0054
SER 1260.0052
SER 1270.0064
LEU 1280.0064
GLN 1290.0074
LYS 1300.0065
LEU 1310.0063
VAL 1320.0063
ALA 1330.0066
VAL 1340.0062
GLU 1350.0063
THR 1360.0068
ASN 1370.0076
LEU 1380.0080
ALA 1390.0084
SER 1400.0088
LEU 1410.0090
GLU 1420.0114
ASN 1430.0109
PHE 1440.0101
PRO 1450.0104
ILE 1460.0102
GLY 1470.0117
HIS 1480.0110
LEU 1490.0096
LYS 1500.0108
THR 1510.0097
LEU 1520.0090
LYS 1530.0092
GLU 1540.0077
LEU 1550.0071
ASN 1560.0056
VAL 1570.0052
ALA 1580.0038
HIS 1590.0029
ASN 1600.0044
LEU 1610.0056
ILE 1620.0056
GLN 1630.0056
SER 1640.0066
PHE 1650.0069
LYS 1660.0088
LEU 1670.0105
PRO 1680.0119
GLU 1690.0137
TYR 1700.0133
PHE 1710.0123
SER 1720.0145
ASN 1730.0136
LEU 1740.0119
THR 1750.0132
ASN 1760.0118
LEU 1770.0093
GLU 1780.0092
HIS 1790.0073
LEU 1800.0064
ASP 1810.0045
LEU 1820.0038
SER 1830.0024
SER 1840.0007
ASN 1850.0021
LYS 1860.0028
ILE 1870.0025
GLN 1880.0013
SER 1890.0024
ILE 1900.0043
TYR 1910.0053
CYS 1920.0078
THR 1930.0091
ASP 1940.0082
LEU 1950.0096
ARG 1960.0116
VAL 1970.0118
LEU 1980.0113
HIS 1990.0125
GLN 2000.0143
MET 2010.0140
PRO 2020.0131
LEU 2030.0130
LEU 2040.0106
ASN 2050.0096
LEU 2060.0074
SER 2070.0053
LEU 2080.0043
ASP 2090.0032
LEU 2100.0025
SER 2110.0025
LEU 2120.0026
ASN 2130.0013
PRO 2140.0021
MET 2150.0025
ASN 2160.0030
PHE 2170.0027
ILE 2180.0041
GLN 2190.0051
PRO 2200.0070
GLY 2210.0085
ALA 2220.0071
PHE 2230.0076
LYS 2240.0097
GLU 2250.0108
ILE 2260.0090
ARG 2270.0071
LEU 2280.0051
HIS 2290.0049
LYS 2300.0039
LEU 2310.0032
THR 2320.0038
LEU 2330.0042
ARG 2340.0046
ASN 2350.0049
ASN 2360.0041
PHE 2370.0062
ASP 2380.0074
SER 2390.0089
LEU 2400.0097
ASN 2410.0099
VAL 2420.0074
MET 2430.0075
LYS 2440.0089
THR 2450.0081
CYS 2460.0066
ILE 2470.0071
GLN 2480.0082
GLY 2490.0063
LEU 2500.0068
ALA 2510.0090
GLY 2520.0092
LEU 2530.0069
GLU 2540.0061
VAL 2550.0042
HIS 2560.0034
ARG 2570.0038
LEU 2580.0042
VAL 2590.0044
LEU 2600.0049
GLY 2610.0055
GLU 2620.0060
PHE 2630.0060
ARG 2640.0067
ASN 2650.0064
GLU 2660.0060
GLY 2670.0077
ASN 2680.0081
LEU 2690.0088
GLU 2700.0103
LYS 2710.0107
PHE 2720.0102
ASP 2730.0111
LYS 2740.0109
SER 2750.0110
ALA 2760.0097
LEU 2770.0089
GLU 2780.0099
GLY 2790.0087
LEU 2800.0079
CYS 2810.0092
ASN 2820.0092
LEU 2830.0069
THR 2840.0057
ILE 2850.0043
GLU 2860.0037
GLU 2870.0048
PHE 2880.0050
ARG 2890.0054
LEU 2900.0057
ALA 2910.0059
TYR 2920.0067
LEU 2930.0076
ASP 2940.0087
TYR 2950.0094
TYR 2960.0093
LEU 2970.0092
ASP 2980.0100
GLY 2990.0090
ILE 3000.0080
ILE 3010.0085
ASP 3020.0092
LEU 3030.0085
PHE 3040.0074
ASN 3050.0078
CYS 3060.0076
LEU 3070.0064
THR 3080.0059
ASN 3090.0068
VAL 3100.0060
SER 3110.0059
SER 3120.0056
PHE 3130.0056
SER 3140.0059
LEU 3150.0062
VAL 3160.0066
SER 3170.0078
VAL 3180.0079
THR 3190.0086
ILE 3200.0085
GLU 3210.0093
ARG 3220.0084
VAL 3230.0077
LYS 3240.0076
ASP 3250.0070
PHE 3260.0072
SER 3270.0062
TYR 3280.0064
ASN 3290.0069
PHE 3300.0070
GLY 3310.0079
TRP 3320.0076
GLN 3330.0087
HIS 3340.0083
LEU 3350.0074
GLU 3360.0071
LEU 3370.0084
VAL 3380.0089
ASN 3390.0092
CYS 3400.0088
LYS 3410.0096
PHE 3420.0091
GLY 3430.0096
GLN 3440.0097
PHE 3450.0100
PRO 3460.0095
THR 3470.0089
LEU 3480.0092
LYS 3490.0093
LEU 3500.0097
LYS 3510.0106
SER 3520.0106
LEU 3530.0102
LYS 3540.0105
ARG 3550.0101
LEU 3560.0096
THR 3570.0096
PHE 3580.0097
THR 3590.0102
SER 3600.0107
ASN 3610.0103
LYS 3620.0103
GLY 3630.0103
GLY 3640.0103
ASN 3650.0106
ALA 3660.0113
PHE 3670.0126
SER 3680.0123
GLU 3690.0128
VAL 3700.0124
ASP 3710.0126
LEU 3720.0126
PRO 3730.0126
SER 3740.0127
LEU 3750.0128
GLU 3760.0130
PHE 3770.0121
LEU 3780.0118
ASP 3790.0115
LEU 3800.0113
SER 3810.0111
ARG 3820.0114
ASN 3830.0114
GLY 3840.0112
LEU 3850.0118
SER 3860.0122
PHE 3870.0136
LYS 3880.0146
GLY 3890.0159
CYS 3900.0155
CYS 3910.0163
SER 3920.0166
GLN 3930.0170
SER 3940.0166
ASP 3950.0153
PHE 3960.0154
GLY 3970.0154
THR 3980.0155
ILE 3990.0157
SER 4000.0157
LEU 4010.0155
LYS 4020.0150
TYR 4030.0141
LEU 4040.0137
ASP 4050.0128
LEU 4060.0125
SER 4070.0119
PHE 4080.0111
ASN 4090.0118
GLY 4100.0117
VAL 4110.0122
ILE 4120.0138
THR 4130.0148
MET 4140.0150
SER 4150.0171
SER 4160.0175
ASN 4170.0162
PHE 4180.0168
LEU 4190.0185
GLY 4200.0193
LEU 4210.0178
GLU 4220.0176
GLN 4230.0175
LEU 4240.0160
GLU 4250.0149
HIS 4260.0137
LEU 4270.0129
ASP 4280.0120
PHE 4290.0115
GLN 4300.0100
HIS 4310.0095
SER 4320.0106
ASN 4330.0107
LEU 4340.0116
LYS 4350.0132
GLN 4360.0144
MET 4370.0129
SER 4380.0133
GLU 4390.0163
PHE 4400.0156
SER 4410.0136
VAL 4420.0145
PHE 4430.0138
LEU 4440.0148
SER 4450.0165
LEU 4460.0149
ARG 4470.0150
ASN 4480.0154
LEU 4490.0136
ILE 4500.0121
TYR 4510.0108
LEU 4520.0095
ASP 4530.0085
ILE 4540.0083
SER 4550.0061
HIS 4560.0062
THR 4570.0089
HIS 4580.0095
THR 4590.0096
ARG 4600.0108
VAL 4610.0099
ALA 4620.0132
PHE 4630.0126
ASN 4640.0100
GLY 4650.0104
ILE 4660.0101
PHE 4670.0089
ASN 4680.0103
GLY 4690.0116
LEU 4700.0097
SER 4710.0092
SER 4720.0101
LEU 4730.0082
GLU 4740.0074
VAL 4750.0063
LEU 4760.0045
LYS 4770.0039
MET 4780.0038
ALA 4790.0025
GLY 4800.0038
ASN 4810.0061
SER 4820.0087
PHE 4830.0103
GLN 4840.0137
GLU 4850.0154
ASN 4860.0126
PHE 4870.0122
LEU 4880.0092
PRO 4890.0095
ASP 4900.0075
ILE 4910.0063
PHE 4920.0048
THR 4930.0048
GLU 4940.0048
LEU 4950.0034
ARG 4960.0031
ASN 4970.0047
LEU 4980.0035
THR 4990.0057
PHE 5000.0046
LEU 5010.0035
ASP 5020.0043
LEU 5030.0053
SER 5040.0056
GLN 5050.0058
CYS 5060.0069
GLN 5070.0090
LEU 5080.0097
GLU 5090.0124
GLN 5100.0127
LEU 5110.0112
SER 5120.0113
PRO 5130.0117
THR 5140.0099
ALA 5150.0086
PHE 5160.0077
ASN 5170.0081
SER 5180.0059
LEU 5190.0052
SER 5200.0065
SER 5210.0058
LEU 5220.0066
GLN 5230.0075
VAL 5240.0073
LEU 5250.0075
ASN 5260.0076
MET 5270.0094
SER 5280.0094
HIS 5290.0094
ASN 5300.0096
ASN 5310.0102
PHE 5320.0102
PHE 5330.0093
SER 5340.0091
LEU 5350.0095
ASP 5360.0098
THR 5370.0110
PHE 5380.0117
PRO 5390.0114
TYR 5400.0111
LYS 5410.0117
CYS 5420.0099
LEU 5430.0091
ASN 5440.0095
SER 5450.0084
LEU 5460.0087
GLN 5470.0100
VAL 5480.0101
LEU 5490.0101
ASP 5500.0102
TYR 5510.0103
SER 5520.0107
LEU 5530.0108
ASN 5540.0103
HIS 5550.0093
ILE 5560.0083
MET 5570.0058
THR 5580.0050
SER 5590.0061
LYS 5600.0068
LYS 5610.0078
GLN 5620.0071
GLU 5630.0088
LEU 5640.0077
GLN 5650.0089
HIS 5660.0109
PHE 5670.0107
PRO 5680.0097
SER 5690.0101
SER 5700.0091
LEU 5710.0098
ALA 5720.0123
PHE 5730.0122
LEU 5740.0106
ASN 5750.0110
LEU 5760.0094
THR 5770.0102
GLN 5780.0098
ASN 5790.0083
ASP 5800.0070
PHE 5810.0036
ALA 5820.0088
CYS 5830.0101
THR 5840.0160
CYS 5850.0190
GLU 5860.0167
HIS 5870.0084
GLN 5880.0111
SER 5890.0089
PHE 5900.0045
LEU 5910.0070
GLN 5920.0098
TRP 5930.0086
ILE 5940.0081
LYS 5950.0125
ASP 5960.0146
GLN 5970.0119
ARG 5980.0112
GLN 5990.0150
LEU 6000.0144
LEU 6010.0113
VAL 6020.0146
GLU 6030.0134
VAL 6040.0105
GLU 6050.0096
ARG 6060.0091
MET 6070.0059
GLU 6080.0018
CYS 6090.0051
ALA 6100.0099
THR 6110.0140
PRO 6120.0192
SER 6130.0218
ASP 6140.0222
LYS 6150.0151
GLN 6160.0126
GLY 6170.0059
MET 6180.0057
PRO 6190.0048
VAL 6200.0052
LEU 6210.0107
SER 6220.0139
LEU 6230.0141
ASN 6240.0226
ILE 6250.0227
THR 6260.0308
CYS 6270.0400
GLU 10.0270
ALA 20.0230
ALA 30.0229
ALA 40.0259
LYS 50.0250
MET 60.0208
GLN 70.0230
ARG 80.0244
LEU 90.0220
VAL 100.0217
LEU 110.0204
LEU 120.0185
LEU 130.0189
ALA 140.0208
ILE 150.0202
SER 160.0150
LEU 170.0175
LEU 180.0166
LEU 190.0145
TYR 200.0165
GLN 210.0133
ASP 220.0102
LEU 230.0106
PRO 240.0155
VAL 250.0183
ARG 260.0014
SER 270.0041
GLU 280.0040
PHE 290.0086
GLU 300.0082
LEU 310.0085
ASP 320.0073
ARG 330.0085
ILE 340.0076
CYS 350.0058
GLY 360.0081
TYR 370.0074
GLY 380.0070
THR 390.0064
ALA 400.0079
ARG 410.0065
CYS 420.0101
ARG 430.0153
LYS 440.0207
LYS 450.0215
CYS 460.0170
ARG 470.0153
SER 480.0150
GLN 490.0112
GLU 500.0121
TYR 510.0142
ARG 520.0156
ILE 530.0139
GLY 540.0151
ARG 550.0152
CYS 560.0107
PRO 570.0101
ASN 580.0142
THR 590.0177
TYR 600.0175
ALA 610.0153
CYS 620.0117
CYS 630.0114
LEU 640.0088
ARG 650.0083
LYS 660.0101
TRP 670.0088
ASP 680.0069
GLU 690.0058
SER 700.0040
LEU 710.0051
LEU 720.0056
ASN 730.0038
ARG 740.0034
THR 750.0051
LYS 760.0062
PRO 770.0065
GLU 780.0060
ALA 790.0085
ALA 800.0089
ALA 810.0137
LYS 820.0127
LYS 830.0102
GLU 840.0110
MET 850.0082
ASN 860.0062
LEU 870.0032
SER 880.0019
VAL 890.0037
GLY 900.0071
LEU 910.0115
GLY 920.0187
GLY 930.0256
GLY 940.0221
SER 950.0160
ASN 960.0078
LEU 970.0051
SER 980.0004
VAL 990.0048
GLY 1000.0079
LEU 1010.0101
GLY 1020.0127
GLU 1030.0141
ILE 1040.0170
GLY 1050.0200
GLY 1060.0233
GLY 1070.0169
SER 1080.0159
LYS 1090.0121
LEU 1100.0148
LEU 1110.0144
ASP 1120.0150
ILE 1130.0112
ASN 1140.0153
LEU 1150.0134
GLY 1160.0221
ARG 1170.0286
GLY 1180.0225
GLY 1190.0227
GLY 1200.0231
SER 1210.0107
MET 1220.0073
VAL 1230.0061
ASP 1240.0036
LEU 1250.0025
THR 1260.0021
PHE 1270.0025
GLY 1280.0027
GLY 1290.0033
VAL 1300.0038
GLY 1310.0065
GLY 1320.0075
GLY 1330.0088
SER 1340.0084
THR 1350.0091
PHE 1360.0073
THR 1370.0068
PHE 1380.0049
PHE 1390.0056
PRO 1400.0061
LEU 1410.0135
VAL 1420.0201
ILE 1430.0282
GLY 1440.0386
GLY 1450.0467
GLY 1460.0359
SER 1470.0255
ASP 1480.0129
ALA 1490.0154
MET 1500.0106
TYR 1510.0127
LEU 1520.0096
GLY 1530.0100
PHE 1540.0088
ALA 1550.0094
ALA 1560.0105
GLY 1570.0116
GLY 1580.0118
GLY 1590.0121
SER 1600.0118
ALA 1610.0090
GLY 1620.0080
GLY 1630.0060
GLU 1640.0035
ASN 1650.0020
HIS 1660.0015
VAL 1670.0030
ALA 1680.0031
PHE 1690.0043
GLY 1700.0045
PRO 1710.0043
GLY 1720.0085
PRO 1730.0135
GLY 1740.0120
VAL 1750.0077
ASP 1760.0064
LEU 1770.0034
THR 1780.0051
PHE 1790.0053
GLY 1800.0084
GLY 1810.0112
VAL 1820.0104
GLN 1830.0090
PHE 1840.0062
ALA 1850.0071
MET 1860.0060
VAL 1870.0106
ASN 1880.0065
ASN 1890.0149
GLY 1900.0125
PRO 1910.0174
GLY 1920.0139
PRO 1930.0060
GLY 1940.0094
GLU 1950.0062
SER 1960.0029
PHE 1970.0052
THR 1980.0029
ALA 1990.0046
GLN 2000.0013
PRO 2010.0026
ALA 2020.0022
ASP 2030.0050
MET 2040.0065
GLN 2050.0072
ALA 2060.0025
GLY 2070.0082
ILE 2080.0101
LYS 2090.0032
GLY 2100.0158
PRO 2110.0185
GLY 2120.0107
PRO 2130.0153
GLY 2140.0210
GLY 2150.0095
SER 2160.0105
ILE 2170.0084
GLN 2180.0147
VAL 2190.0153
ILE 2200.0215
ASN 2210.0155
GLY 2220.0138
SER 2230.0107
THR 2240.0084
ILE 2250.0141
GLY 2260.0273
THR 2270.0228
GLY 2280.0126
SER 2290.0043
LYS 2300.0052
LYS 2310.0033
THR 2320.0034
ILE 2330.0023
LEU 2340.0059
ILE 2350.0057
TYR 2360.0067
SER 2370.0060
ILE 2380.0075
ILE 2390.0083
GLY 2400.0105
VAL 2410.0094
LYS 2420.0103
LYS 2430.0104
GLY 2440.0112
THR 2450.0119
LEU 2460.0115
ALA 2470.0089
TRP 2480.0066
ALA 2490.0054
ARG 2500.0054
THR 2510.0058
GLY 2520.0066
PHE 2530.0057
SER 2540.0066
PRO 2550.0057
ALA 2560.0088
LYS 2570.0143
LYS 2580.0189
LEU 2590.0285
ASN 2600.0451
ALA 2610.0576
GLY 2620.0425
VAL 2630.0306
VAL 2640.0213
ARG 2650.0093
VAL 2660.0108
PHE 2670.0090
PHE 2680.0094
LEU 2690.0100
ASN 2700.0142
GLN 2710.0127
LYS 2720.0128
LYS 2730.0124
ALA 2740.0116
LYS 2750.0110
ASP 2760.0116
VAL 2770.0102
LEU 2780.0072
ARG 2790.0073
LYS 2800.0102
THR 2810.0112
SER 2820.0162
ARG 2830.0158
PRO 2840.0198
MET 2850.0246
VAL 2860.0023
ASP 2870.0227
LEU 2880.0219
THR 2890.0415
PHE 2900.0314
GLY 2910.0281
GLY 2920.0582

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.