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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 60  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0656
GLU 270.0088
PRO 280.0101
CYS 290.0096
VAL 300.0111
GLU 310.0112
VAL 320.0115
VAL 330.0112
PRO 340.0114
ASN 350.0096
ILE 360.0085
THR 370.0080
TYR 380.0079
GLN 390.0085
CYS 400.0077
MET 410.0087
GLU 420.0098
LEU 430.0096
ASN 440.0093
PHE 450.0072
TYR 460.0070
LYS 470.0051
ILE 480.0038
PRO 490.0045
ASP 500.0036
ASN 510.0056
LEU 520.0063
PRO 530.0069
PHE 540.0058
SER 550.0065
THR 560.0055
LYS 570.0042
ASN 580.0043
LEU 590.0041
ASP 600.0050
LEU 610.0049
SER 620.0055
PHE 630.0069
ASN 640.0066
PRO 650.0070
LEU 660.0056
ARG 670.0058
HIS 680.0048
LEU 690.0034
GLY 700.0031
SER 710.0025
TYR 720.0015
SER 730.0015
PHE 740.0008
PHE 750.0010
SER 760.0020
PHE 770.0022
PRO 780.0027
GLU 790.0029
LEU 800.0015
GLN 810.0010
VAL 820.0017
LEU 830.0020
ASP 840.0025
LEU 850.0029
SER 860.0033
ARG 870.0041
CYS 880.0043
GLU 890.0050
ILE 900.0045
GLN 910.0051
THR 920.0044
ILE 930.0035
GLU 940.0034
ASP 950.0033
GLY 960.0025
ALA 970.0022
TYR 980.0017
GLN 990.0019
SER 1000.0013
LEU 1010.0010
SER 1020.0020
HIS 1030.0017
LEU 1040.0023
SER 1050.0036
THR 1060.0045
LEU 1070.0036
ILE 1080.0034
LEU 1090.0032
THR 1100.0029
GLY 1110.0029
ASN 1120.0029
PRO 1130.0029
ILE 1140.0030
GLN 1150.0034
SER 1160.0036
LEU 1170.0028
ALA 1180.0028
LEU 1190.0026
GLY 1200.0027
ALA 1210.0027
PHE 1220.0023
SER 1230.0023
GLY 1240.0024
LEU 1250.0028
SER 1260.0032
SER 1270.0056
LEU 1280.0051
GLN 1290.0068
LYS 1300.0067
LEU 1310.0052
VAL 1320.0052
ALA 1330.0040
VAL 1340.0051
GLU 1350.0055
THR 1360.0043
ASN 1370.0060
LEU 1380.0046
ALA 1390.0058
SER 1400.0052
LEU 1410.0043
GLU 1420.0074
ASN 1430.0065
PHE 1440.0035
PRO 1450.0029
ILE 1460.0033
GLY 1470.0048
HIS 1480.0053
LEU 1490.0050
LYS 1500.0075
THR 1510.0085
LEU 1520.0073
LYS 1530.0087
GLU 1540.0076
LEU 1550.0054
ASN 1560.0062
VAL 1570.0037
ALA 1580.0059
HIS 1590.0084
ASN 1600.0073
LEU 1610.0086
ILE 1620.0085
GLN 1630.0108
SER 1640.0103
PHE 1650.0080
LYS 1660.0110
LEU 1670.0090
PRO 1680.0102
GLU 1690.0129
TYR 1700.0101
PHE 1710.0095
SER 1720.0124
ASN 1730.0114
LEU 1740.0092
THR 1750.0127
ASN 1760.0126
LEU 1770.0089
GLU 1780.0102
HIS 1790.0086
LEU 1800.0055
ASP 1810.0060
LEU 1820.0030
SER 1830.0060
SER 1840.0092
ASN 1850.0081
LYS 1860.0102
ILE 1870.0096
GLN 1880.0122
SER 1890.0122
ILE 1900.0117
TYR 1910.0161
CYS 1920.0182
THR 1930.0195
ASP 1940.0150
LEU 1950.0151
ARG 1960.0190
VAL 1970.0165
LEU 1980.0156
HIS 1990.0201
GLN 2000.0218
MET 2010.0197
PRO 2020.0217
LEU 2030.0219
LEU 2040.0167
ASN 2050.0162
LEU 2060.0109
SER 2070.0094
LEU 2080.0060
ASP 2090.0057
LEU 2100.0036
SER 2110.0064
LEU 2120.0091
ASN 2130.0078
PRO 2140.0108
MET 2150.0086
ASN 2160.0117
PHE 2170.0124
ILE 2180.0114
GLN 2190.0153
PRO 2200.0160
GLY 2210.0180
ALA 2220.0152
PHE 2230.0136
LYS 2240.0178
GLU 2250.0194
ILE 2260.0154
ARG 2270.0137
LEU 2280.0109
HIS 2290.0131
LYS 2300.0102
LEU 2310.0062
THR 2320.0066
LEU 2330.0045
ARG 2340.0071
ASN 2350.0082
ASN 2360.0064
PHE 2370.0072
ASP 2380.0100
SER 2390.0084
LEU 2400.0056
ASN 2410.0078
VAL 2420.0084
MET 2430.0046
LYS 2440.0054
THR 2450.0087
CYS 2460.0069
ILE 2470.0053
GLN 2480.0090
GLY 2490.0099
LEU 2500.0087
ALA 2510.0119
GLY 2520.0137
LEU 2530.0106
GLU 2540.0124
VAL 2550.0106
HIS 2560.0136
ARG 2570.0117
LEU 2580.0090
VAL 2590.0089
LEU 2600.0070
GLY 2610.0081
GLU 2620.0090
PHE 2630.0118
ARG 2640.0136
ASN 2650.0154
GLU 2660.0136
GLY 2670.0120
ASN 2680.0096
LEU 2690.0073
GLU 2700.0086
LYS 2710.0059
PHE 2720.0035
ASP 2730.0026
LYS 2740.0038
SER 2750.0038
ALA 2760.0028
LEU 2770.0042
GLU 2780.0061
GLY 2790.0065
LEU 2800.0071
CYS 2810.0102
ASN 2820.0111
LEU 2830.0096
THR 2840.0116
ILE 2850.0109
GLU 2860.0135
GLU 2870.0123
PHE 2880.0109
ARG 2890.0108
LEU 2900.0097
ALA 2910.0106
TYR 2920.0094
LEU 2930.0075
ASP 2940.0080
TYR 2950.0060
TYR 2960.0057
LEU 2970.0068
ASP 2980.0066
GLY 2990.0071
ILE 3000.0072
ILE 3010.0073
ASP 3020.0074
LEU 3030.0067
PHE 3040.0083
ASN 3050.0090
CYS 3060.0086
LEU 3070.0096
THR 3080.0097
ASN 3090.0108
VAL 3100.0112
SER 3110.0122
SER 3120.0128
PHE 3130.0118
SER 3140.0118
LEU 3150.0110
VAL 3160.0115
SER 3170.0112
VAL 3180.0097
THR 3190.0087
ILE 3200.0078
GLU 3210.0071
ARG 3220.0067
VAL 3230.0071
LYS 3240.0067
ASP 3250.0070
PHE 3260.0078
SER 3270.0074
TYR 3280.0079
ASN 3290.0085
PHE 3300.0094
GLY 3310.0102
TRP 3320.0113
GLN 3330.0114
HIS 3340.0114
LEU 3350.0114
GLU 3360.0114
LEU 3370.0105
VAL 3380.0113
ASN 3390.0110
CYS 3400.0093
LYS 3410.0079
PHE 3420.0074
GLY 3430.0065
GLN 3440.0053
PHE 3450.0055
PRO 3460.0060
THR 3470.0063
LEU 3480.0070
LYS 3490.0072
LEU 3500.0083
LYS 3510.0089
SER 3520.0097
LEU 3530.0097
LYS 3540.0094
ARG 3550.0095
LEU 3560.0098
THR 3570.0112
PHE 3580.0088
THR 3590.0097
SER 3600.0102
ASN 3610.0082
LYS 3620.0091
GLY 3630.0082
GLY 3640.0065
ASN 3650.0055
ALA 3660.0038
PHE 3670.0026
SER 3680.0024
GLU 3690.0034
VAL 3700.0045
ASP 3710.0059
LEU 3720.0078
PRO 3730.0079
SER 3740.0080
LEU 3750.0078
GLU 3760.0078
PHE 3770.0097
LEU 3780.0078
ASP 3790.0076
LEU 3800.0058
SER 3810.0063
ARG 3820.0086
ASN 3830.0073
GLY 3840.0072
LEU 3850.0047
SER 3860.0041
PHE 3870.0034
LYS 3880.0057
GLY 3890.0063
CYS 3900.0039
CYS 3910.0045
SER 3920.0064
GLN 3930.0077
SER 3940.0071
ASP 3950.0047
PHE 3960.0057
GLY 3970.0068
THR 3980.0078
ILE 3990.0090
SER 4000.0094
LEU 4010.0082
LYS 4020.0096
TYR 4030.0080
LEU 4040.0057
ASP 4050.0052
LEU 4060.0032
SER 4070.0059
PHE 4080.0082
ASN 4090.0067
GLY 4100.0079
VAL 4110.0075
ILE 4120.0054
THR 4130.0071
MET 4140.0065
SER 4150.0090
SER 4160.0087
ASN 4170.0080
PHE 4180.0077
LEU 4190.0106
GLY 4200.0114
LEU 4210.0094
GLU 4220.0115
GLN 4230.0120
LEU 4240.0093
GLU 4250.0100
HIS 4260.0080
LEU 4270.0053
ASP 4280.0048
PHE 4290.0036
GLN 4300.0068
HIS 4310.0090
SER 4320.0072
ASN 4330.0084
LEU 4340.0065
LYS 4350.0086
GLN 4360.0095
MET 4370.0069
SER 4380.0089
GLU 4390.0113
PHE 4400.0107
SER 4410.0089
VAL 4420.0072
PHE 4430.0068
LEU 4440.0099
SER 4450.0110
LEU 4460.0095
ARG 4470.0126
ASN 4480.0126
LEU 4490.0097
ILE 4500.0104
TYR 4510.0082
LEU 4520.0051
ASP 4530.0048
ILE 4540.0034
SER 4550.0062
HIS 4560.0083
THR 4570.0069
HIS 4580.0087
THR 4590.0065
ARG 4600.0077
VAL 4610.0058
ALA 4620.0083
PHE 4630.0081
ASN 4640.0074
GLY 4650.0080
ILE 4660.0058
PHE 4670.0059
ASN 4680.0086
GLY 4690.0098
LEU 4700.0085
SER 4710.0107
SER 4720.0114
LEU 4730.0089
GLU 4740.0095
VAL 4750.0079
LEU 4760.0053
LYS 4770.0054
MET 4780.0041
ALA 4790.0063
GLY 4800.0075
ASN 4810.0060
SER 4820.0065
PHE 4830.0046
GLN 4840.0055
GLU 4850.0053
ASN 4860.0049
PHE 4870.0046
LEU 4880.0040
PRO 4890.0044
ASP 4900.0046
ILE 4910.0047
PHE 4920.0056
THR 4930.0068
GLU 4940.0082
LEU 4950.0073
ARG 4960.0083
ASN 4970.0092
LEU 4980.0075
THR 4990.0083
PHE 5000.0072
LEU 5010.0055
ASP 5020.0055
LEU 5030.0047
SER 5040.0059
GLN 5050.0062
CYS 5060.0049
GLN 5070.0060
LEU 5080.0054
GLU 5090.0050
GLN 5100.0045
LEU 5110.0046
SER 5120.0057
PRO 5130.0053
THR 5140.0052
ALA 5150.0051
PHE 5160.0047
ASN 5170.0051
SER 5180.0059
LEU 5190.0055
SER 5200.0057
SER 5210.0064
LEU 5220.0055
GLN 5230.0058
VAL 5240.0056
LEU 5250.0052
ASN 5260.0052
MET 5270.0054
SER 5280.0055
HIS 5290.0056
ASN 5300.0057
ASN 5310.0059
PHE 5320.0074
PHE 5330.0075
SER 5340.0071
LEU 5350.0066
ASP 5360.0076
THR 5370.0063
PHE 5380.0073
PRO 5390.0068
TYR 5400.0054
LYS 5410.0059
CYS 5420.0045
LEU 5430.0041
ASN 5440.0038
SER 5450.0038
LEU 5460.0038
GLN 5470.0031
VAL 5480.0032
LEU 5490.0040
ASP 5500.0041
TYR 5510.0048
SER 5520.0043
LEU 5530.0053
ASN 5540.0061
HIS 5550.0066
ILE 5560.0059
MET 5570.0060
THR 5580.0065
SER 5590.0078
LYS 5600.0103
LYS 5610.0120
GLN 5620.0114
GLU 5630.0102
LEU 5640.0083
GLN 5650.0090
HIS 5660.0079
PHE 5670.0056
PRO 5680.0046
SER 5690.0046
SER 5700.0032
LEU 5710.0033
ALA 5720.0025
PHE 5730.0016
LEU 5740.0023
ASN 5750.0021
LEU 5760.0026
THR 5770.0034
GLN 5780.0053
ASN 5790.0053
ASP 5800.0064
PHE 5810.0047
ALA 5820.0062
CYS 5830.0046
THR 5840.0037
CYS 5850.0031
GLU 5860.0062
HIS 5870.0052
GLN 5880.0053
SER 5890.0084
PHE 5900.0063
LEU 5910.0039
GLN 5920.0073
TRP 5930.0078
ILE 5940.0049
LYS 5950.0084
ASP 5960.0107
GLN 5970.0082
ARG 5980.0070
GLN 5990.0080
LEU 6000.0052
LEU 6010.0030
VAL 6020.0044
GLU 6030.0058
VAL 6040.0062
GLU 6050.0082
ARG 6060.0070
MET 6070.0060
GLU 6080.0083
CYS 6090.0080
ALA 6100.0106
THR 6110.0110
PRO 6120.0121
SER 6130.0172
ASP 6140.0173
LYS 6150.0137
GLN 6160.0149
GLY 6170.0145
MET 6180.0127
PRO 6190.0106
VAL 6200.0067
LEU 6210.0093
SER 6220.0127
LEU 6230.0100
ASN 6240.0112
ILE 6250.0095
THR 6260.0106
CYS 6270.0107
GLU 10.0238
ALA 20.0281
ALA 30.0259
ALA 40.0202
LYS 50.0230
MET 60.0250
GLN 70.0233
ARG 80.0197
LEU 90.0232
VAL 100.0268
LEU 110.0217
LEU 120.0213
LEU 130.0212
ALA 140.0215
ILE 150.0215
SER 160.0161
LEU 170.0142
LEU 180.0153
LEU 190.0159
TYR 200.0142
GLN 210.0110
ASP 220.0112
LEU 230.0082
PRO 240.0126
VAL 250.0149
ARG 260.0092
SER 270.0062
GLU 280.0050
PHE 290.0048
GLU 300.0044
LEU 310.0081
ASP 320.0094
ARG 330.0074
ILE 340.0106
CYS 350.0153
GLY 360.0100
TYR 370.0105
GLY 380.0110
THR 390.0123
ALA 400.0115
ARG 410.0099
CYS 420.0232
ARG 430.0311
LYS 440.0467
LYS 450.0426
CYS 460.0202
ARG 470.0190
SER 480.0175
GLN 490.0131
GLU 500.0101
TYR 510.0133
ARG 520.0277
ILE 530.0334
GLY 540.0466
ARG 550.0541
CYS 560.0451
PRO 570.0540
ASN 580.0558
THR 590.0656
TYR 600.0524
ALA 610.0341
CYS 620.0258
CYS 630.0184
LEU 640.0126
ARG 650.0078
LYS 660.0125
TRP 670.0117
ASP 680.0109
GLU 690.0114
SER 700.0100
LEU 710.0117
LEU 720.0143
ASN 730.0128
ARG 740.0115
THR 750.0142
LYS 760.0170
PRO 770.0182
GLU 780.0178
ALA 790.0211
ALA 800.0218
ALA 810.0124
LYS 820.0119
LYS 830.0086
GLU 840.0079
MET 850.0070
ASN 860.0065
LEU 870.0058
SER 880.0058
VAL 890.0059
GLY 900.0060
LEU 910.0073
GLY 920.0088
GLY 930.0135
GLY 940.0140
SER 950.0129
ASN 960.0085
LEU 970.0087
SER 980.0080
VAL 990.0083
GLY 1000.0084
LEU 1010.0077
GLY 1020.0080
GLU 1030.0072
ILE 1040.0076
GLY 1050.0085
GLY 1060.0254
GLY 1070.0213
SER 1080.0189
LYS 1090.0113
LEU 1100.0090
LEU 1110.0054
ASP 1120.0042
ILE 1130.0032
ASN 1140.0043
LEU 1150.0049
GLY 1160.0105
ARG 1170.0134
GLY 1180.0101
GLY 1190.0093
GLY 1200.0072
SER 1210.0023
MET 1220.0026
VAL 1230.0022
ASP 1240.0026
LEU 1250.0024
THR 1260.0013
PHE 1270.0021
GLY 1280.0032
GLY 1290.0042
VAL 1300.0057
GLY 1310.0119
GLY 1320.0098
GLY 1330.0072
SER 1340.0042
THR 1350.0025
PHE 1360.0031
THR 1370.0035
PHE 1380.0033
PHE 1390.0038
PRO 1400.0035
LEU 1410.0032
VAL 1420.0027
ILE 1430.0044
GLY 1440.0057
GLY 1450.0079
GLY 1460.0062
SER 1470.0040
ASP 1480.0045
ALA 1490.0025
MET 1500.0023
TYR 1510.0036
LEU 1520.0034
GLY 1530.0042
PHE 1540.0040
ALA 1550.0049
ALA 1560.0043
GLY 1570.0030
GLY 1580.0033
GLY 1590.0063
SER 1600.0086
ALA 1610.0044
GLY 1620.0047
GLY 1630.0035
GLU 1640.0024
ASN 1650.0017
HIS 1660.0023
VAL 1670.0020
ALA 1680.0023
PHE 1690.0021
GLY 1700.0027
PRO 1710.0089
GLY 1720.0092
PRO 1730.0075
GLY 1740.0049
VAL 1750.0027
ASP 1760.0039
LEU 1770.0038
THR 1780.0050
PHE 1790.0055
GLY 1800.0069
GLY 1810.0098
VAL 1820.0101
GLN 1830.0089
PHE 1840.0080
ALA 1850.0077
MET 1860.0045
VAL 1870.0046
ASN 1880.0037
ASN 1890.0028
GLY 1900.0069
PRO 1910.0064
GLY 1920.0044
PRO 1930.0032
GLY 1940.0042
GLU 1950.0014
SER 1960.0064
PHE 1970.0058
THR 1980.0066
ALA 1990.0096
GLN 2000.0019
PRO 2010.0027
ALA 2020.0047
ASP 2030.0093
MET 2040.0109
GLN 2050.0126
ALA 2060.0047
GLY 2070.0039
ILE 2080.0093
LYS 2090.0082
GLY 2100.0117
PRO 2110.0181
GLY 2120.0087
PRO 2130.0216
GLY 2140.0209
GLY 2150.0072
SER 2160.0171
ILE 2170.0174
GLN 2180.0172
VAL 2190.0193
ILE 2200.0191
ASN 2210.0148
GLY 2220.0152
SER 2230.0134
THR 2240.0069
ILE 2250.0101
GLY 2260.0212
THR 2270.0191
GLY 2280.0136
SER 2290.0060
LYS 2300.0062
LYS 2310.0032
THR 2320.0052
ILE 2330.0024
LEU 2340.0023
ILE 2350.0069
TYR 2360.0138
SER 2370.0157
ILE 2380.0166
ILE 2390.0132
GLY 2400.0155
VAL 2410.0121
LYS 2420.0085
LYS 2430.0086
GLY 2440.0106
THR 2450.0098
LEU 2460.0135
ALA 2470.0076
TRP 2480.0058
ALA 2490.0035
ARG 2500.0049
THR 2510.0069
GLY 2520.0069
PHE 2530.0065
SER 2540.0092
PRO 2550.0090
ALA 2560.0066
LYS 2570.0040
LYS 2580.0139
LEU 2590.0231
ASN 2600.0309
ALA 2610.0395
GLY 2620.0289
VAL 2630.0189
VAL 2640.0174
ARG 2650.0102
VAL 2660.0125
PHE 2670.0148
PHE 2680.0144
LEU 2690.0196
ASN 2700.0238
GLN 2710.0206
LYS 2720.0190
LYS 2730.0221
ALA 2740.0234
LYS 2750.0213
ASP 2760.0216
VAL 2770.0169
LEU 2780.0128
ARG 2790.0126
LYS 2800.0158
THR 2810.0170
SER 2820.0165
ARG 2830.0174
PRO 2840.0176
MET 2850.0169
VAL 2860.0120
ASP 2870.0144
LEU 2880.0205
THR 2890.0344
PHE 2900.0286
GLY 2910.0317
GLY 2920.0433

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.