CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 61  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0830
GLU 270.0032
PRO 280.0030
CYS 290.0027
VAL 300.0040
GLU 310.0044
VAL 320.0050
VAL 330.0047
PRO 340.0044
ASN 350.0030
ILE 360.0026
THR 370.0030
TYR 380.0025
GLN 390.0028
CYS 400.0016
MET 410.0025
GLU 420.0024
LEU 430.0015
ASN 440.0011
PHE 450.0008
TYR 460.0016
LYS 470.0020
ILE 480.0014
PRO 490.0008
ASP 500.0020
ASN 510.0025
LEU 520.0019
PRO 530.0020
PHE 540.0015
SER 550.0008
THR 560.0008
LYS 570.0016
ASN 580.0022
LEU 590.0018
ASP 600.0023
LEU 610.0019
SER 620.0027
PHE 630.0028
ASN 640.0021
PRO 650.0024
LEU 660.0025
ARG 670.0030
HIS 680.0031
LEU 690.0031
GLY 700.0033
SER 710.0034
TYR 720.0032
SER 730.0026
PHE 740.0021
PHE 750.0024
SER 760.0017
PHE 770.0014
PRO 780.0019
GLU 790.0014
LEU 800.0017
GLN 810.0025
VAL 820.0027
LEU 830.0026
ASP 840.0028
LEU 850.0028
SER 860.0031
ARG 870.0031
CYS 880.0028
GLU 890.0032
ILE 900.0032
GLN 910.0036
THR 920.0036
ILE 930.0035
GLU 940.0036
ASP 950.0038
GLY 960.0036
ALA 970.0033
TYR 980.0031
GLN 990.0034
SER 1000.0029
LEU 1010.0027
SER 1020.0031
HIS 1030.0029
LEU 1040.0028
SER 1050.0031
THR 1060.0030
LEU 1070.0029
ILE 1080.0029
LEU 1090.0029
THR 1100.0029
GLY 1110.0028
ASN 1120.0030
PRO 1130.0032
ILE 1140.0032
GLN 1150.0033
SER 1160.0033
LEU 1170.0037
ALA 1180.0037
LEU 1190.0038
GLY 1200.0037
ALA 1210.0036
PHE 1220.0035
SER 1230.0037
GLY 1240.0034
LEU 1250.0034
SER 1260.0036
SER 1270.0035
LEU 1280.0032
GLN 1290.0033
LYS 1300.0030
LEU 1310.0026
VAL 1320.0024
ALA 1330.0022
VAL 1340.0020
GLU 1350.0018
THR 1360.0018
ASN 1370.0018
LEU 1380.0020
ALA 1390.0017
SER 1400.0018
LEU 1410.0022
GLU 1420.0026
ASN 1430.0026
PHE 1440.0028
PRO 1450.0030
ILE 1460.0032
GLY 1470.0035
HIS 1480.0035
LEU 1490.0034
LYS 1500.0036
THR 1510.0035
LEU 1520.0029
LYS 1530.0031
GLU 1540.0028
LEU 1550.0024
ASN 1560.0022
VAL 1570.0016
ALA 1580.0015
HIS 1590.0011
ASN 1600.0011
LEU 1610.0012
ILE 1620.0015
GLN 1630.0014
SER 1640.0017
PHE 1650.0020
LYS 1660.0021
LEU 1670.0026
PRO 1680.0027
GLU 1690.0030
TYR 1700.0031
PHE 1710.0031
SER 1720.0034
ASN 1730.0034
LEU 1740.0032
THR 1750.0035
ASN 1760.0034
LEU 1770.0027
GLU 1780.0028
HIS 1790.0025
LEU 1800.0022
ASP 1810.0020
LEU 1820.0016
SER 1830.0016
SER 1840.0014
ASN 1850.0013
LYS 1860.0012
ILE 1870.0016
GLN 1880.0016
SER 1890.0017
ILE 1900.0019
TYR 1910.0021
CYS 1920.0024
THR 1930.0024
ASP 1940.0023
LEU 1950.0026
ARG 1960.0028
VAL 1970.0028
LEU 1980.0029
HIS 1990.0030
GLN 2000.0032
MET 2010.0033
PRO 2020.0032
LEU 2030.0032
LEU 2040.0027
ASN 2050.0026
LEU 2060.0022
SER 2070.0020
LEU 2080.0017
ASP 2090.0017
LEU 2100.0015
SER 2110.0017
LEU 2120.0018
ASN 2130.0016
PRO 2140.0016
MET 2150.0015
ASN 2160.0015
PHE 2170.0017
ILE 2180.0018
GLN 2190.0021
PRO 2200.0023
GLY 2210.0026
ALA 2220.0024
PHE 2230.0024
LYS 2240.0028
GLU 2250.0029
ILE 2260.0025
ARG 2270.0022
LEU 2280.0017
HIS 2290.0018
LYS 2300.0016
LEU 2310.0015
THR 2320.0017
LEU 2330.0016
ARG 2340.0018
ASN 2350.0019
ASN 2360.0017
PHE 2370.0018
ASP 2380.0020
SER 2390.0017
LEU 2400.0015
ASN 2410.0014
VAL 2420.0016
MET 2430.0014
LYS 2440.0015
THR 2450.0017
CYS 2460.0016
ILE 2470.0017
GLN 2480.0020
GLY 2490.0020
LEU 2500.0019
ALA 2510.0023
GLY 2520.0026
LEU 2530.0021
GLU 2540.0019
VAL 2550.0015
HIS 2560.0015
ARG 2570.0016
LEU 2580.0014
VAL 2590.0015
LEU 2600.0014
GLY 2610.0017
GLU 2620.0024
PHE 2630.0027
ARG 2640.0031
ASN 2650.0032
GLU 2660.0028
GLY 2670.0026
ASN 2680.0023
LEU 2690.0018
GLU 2700.0017
LYS 2710.0014
PHE 2720.0013
ASP 2730.0015
LYS 2740.0018
SER 2750.0015
ALA 2760.0010
LEU 2770.0015
GLU 2780.0018
GLY 2790.0016
LEU 2800.0015
CYS 2810.0021
ASN 2820.0024
LEU 2830.0018
THR 2840.0017
ILE 2850.0015
GLU 2860.0016
GLU 2870.0019
PHE 2880.0018
ARG 2890.0020
LEU 2900.0020
ALA 2910.0022
TYR 2920.0025
LEU 2930.0021
ASP 2940.0022
TYR 2950.0018
TYR 2960.0019
LEU 2970.0024
ASP 2980.0027
GLY 2990.0027
ILE 3000.0024
ILE 3010.0025
ASP 3020.0024
LEU 3030.0020
PHE 3040.0021
ASN 3050.0023
CYS 3060.0018
LEU 3070.0020
THR 3080.0021
ASN 3090.0021
VAL 3100.0020
SER 3110.0022
SER 3120.0025
PHE 3130.0025
SER 3140.0026
LEU 3150.0026
VAL 3160.0028
SER 3170.0031
VAL 3180.0029
THR 3190.0029
ILE 3200.0029
GLU 3210.0031
ARG 3220.0030
VAL 3230.0031
LYS 3240.0032
ASP 3250.0029
PHE 3260.0030
SER 3270.0030
TYR 3280.0028
ASN 3290.0028
PHE 3300.0026
GLY 3310.0025
TRP 3320.0028
GLN 3330.0029
HIS 3340.0030
LEU 3350.0031
GLU 3360.0031
LEU 3370.0034
VAL 3380.0034
ASN 3390.0033
CYS 3400.0031
LYS 3410.0031
PHE 3420.0032
GLY 3430.0031
GLN 3440.0032
PHE 3450.0033
PRO 3460.0035
THR 3470.0033
LEU 3480.0032
LYS 3490.0031
LEU 3500.0030
LYS 3510.0029
SER 3520.0029
LEU 3530.0030
LYS 3540.0030
ARG 3550.0031
LEU 3560.0033
THR 3570.0035
PHE 3580.0034
THR 3590.0034
SER 3600.0034
ASN 3610.0033
LYS 3620.0029
GLY 3630.0028
GLY 3640.0027
ASN 3650.0027
ALA 3660.0028
PHE 3670.0034
SER 3680.0034
GLU 3690.0032
VAL 3700.0031
ASP 3710.0030
LEU 3720.0031
PRO 3730.0028
SER 3740.0027
LEU 3750.0028
GLU 3760.0027
PHE 3770.0031
LEU 3780.0031
ASP 3790.0032
LEU 3800.0033
SER 3810.0033
ARG 3820.0031
ASN 3830.0031
GLY 3840.0030
LEU 3850.0030
SER 3860.0030
PHE 3870.0031
LYS 3880.0030
GLY 3890.0029
CYS 3900.0028
CYS 3910.0028
SER 3920.0027
GLN 3930.0028
SER 3940.0031
ASP 3950.0032
PHE 3960.0032
GLY 3970.0029
THR 3980.0027
ILE 3990.0025
SER 4000.0024
LEU 4010.0026
LYS 4020.0026
TYR 4030.0027
LEU 4040.0028
ASP 4050.0029
LEU 4060.0030
SER 4070.0030
PHE 4080.0030
ASN 4090.0030
GLY 4100.0031
VAL 4110.0031
ILE 4120.0030
THR 4130.0029
MET 4140.0026
SER 4150.0028
SER 4160.0027
ASN 4170.0024
PHE 4180.0024
LEU 4190.0025
GLY 4200.0025
LEU 4210.0024
GLU 4220.0022
GLN 4230.0022
LEU 4240.0023
GLU 4250.0021
HIS 4260.0023
LEU 4270.0025
ASP 4280.0026
PHE 4290.0027
GLN 4300.0027
HIS 4310.0028
SER 4320.0029
ASN 4330.0029
LEU 4340.0026
LYS 4350.0027
GLN 4360.0027
MET 4370.0022
SER 4380.0021
GLU 4390.0025
PHE 4400.0024
SER 4410.0020
VAL 4420.0022
PHE 4430.0019
LEU 4440.0019
SER 4450.0020
LEU 4460.0018
ARG 4470.0016
ASN 4480.0016
LEU 4490.0017
ILE 4500.0016
TYR 4510.0017
LEU 4520.0018
ASP 4530.0019
ILE 4540.0020
SER 4550.0019
HIS 4560.0021
THR 4570.0024
HIS 4580.0022
THR 4590.0019
ARG 4600.0016
VAL 4610.0015
ALA 4620.0015
PHE 4630.0017
ASN 4640.0015
GLY 4650.0017
ILE 4660.0015
PHE 4670.0013
ASN 4680.0015
GLY 4690.0015
LEU 4700.0012
SER 4710.0009
SER 4720.0009
LEU 4730.0009
GLU 4740.0007
VAL 4750.0009
LEU 4760.0009
LYS 4770.0012
MET 4780.0011
ALA 4790.0011
GLY 4800.0012
ASN 4810.0012
SER 4820.0007
PHE 4830.0009
GLN 4840.0013
GLU 4850.0011
ASN 4860.0006
PHE 4870.0009
LEU 4880.0008
PRO 4890.0011
ASP 4900.0011
ILE 4910.0010
PHE 4920.0008
THR 4930.0011
GLU 4940.0011
LEU 4950.0007
ARG 4960.0007
ASN 4970.0004
LEU 4980.0003
THR 4990.0000
PHE 5000.0002
LEU 5010.0001
ASP 5020.0003
LEU 5030.0003
SER 5040.0002
GLN 5050.0003
CYS 5060.0004
GLN 5070.0003
LEU 5080.0006
GLU 5090.0008
GLN 5100.0011
LEU 5110.0011
SER 5120.0011
PRO 5130.0012
THR 5140.0013
ALA 5150.0010
PHE 5160.0010
ASN 5170.0011
SER 5180.0011
LEU 5190.0008
SER 5200.0010
SER 5210.0008
LEU 5220.0007
GLN 5230.0006
VAL 5240.0005
LEU 5250.0006
ASN 5260.0005
MET 5270.0007
SER 5280.0007
HIS 5290.0007
ASN 5300.0008
ASN 5310.0009
PHE 5320.0013
PHE 5330.0014
SER 5340.0014
LEU 5350.0014
ASP 5360.0015
THR 5370.0013
PHE 5380.0014
PRO 5390.0013
TYR 5400.0013
LYS 5410.0014
CYS 5420.0013
LEU 5430.0012
ASN 5440.0012
SER 5450.0010
LEU 5460.0010
GLN 5470.0010
VAL 5480.0010
LEU 5490.0011
ASP 5500.0011
TYR 5510.0011
SER 5520.0013
LEU 5530.0013
ASN 5540.0014
HIS 5550.0014
ILE 5560.0015
MET 5570.0017
THR 5580.0016
SER 5590.0016
LYS 5600.0016
LYS 5610.0016
GLN 5620.0014
GLU 5630.0014
LEU 5640.0015
GLN 5650.0016
HIS 5660.0016
PHE 5670.0013
PRO 5680.0013
SER 5690.0012
SER 5700.0012
LEU 5710.0012
ALA 5720.0013
PHE 5730.0014
LEU 5740.0014
ASN 5750.0015
LEU 5760.0015
THR 5770.0018
GLN 5780.0018
ASN 5790.0018
ASP 5800.0018
PHE 5810.0018
ALA 5820.0019
CYS 5830.0018
THR 5840.0017
CYS 5850.0016
GLU 5860.0017
HIS 5870.0016
GLN 5880.0016
SER 5890.0016
PHE 5900.0016
LEU 5910.0017
GLN 5920.0017
TRP 5930.0016
ILE 5940.0018
LYS 5950.0020
ASP 5960.0018
GLN 5970.0017
ARG 5980.0018
GLN 5990.0018
LEU 6000.0017
LEU 6010.0018
VAL 6020.0020
GLU 6030.0022
VAL 6040.0021
GLU 6050.0024
ARG 6060.0024
MET 6070.0022
GLU 6080.0024
CYS 6090.0023
ALA 6100.0026
THR 6110.0025
PRO 6120.0027
SER 6130.0033
ASP 6140.0032
LYS 6150.0029
GLN 6160.0032
GLY 6170.0031
MET 6180.0028
PRO 6190.0026
VAL 6200.0022
LEU 6210.0022
SER 6220.0027
LEU 6230.0024
ASN 6240.0023
ILE 6250.0021
THR 6260.0021
CYS 6270.0020
GLU 10.0063
ALA 20.0067
ALA 30.0078
ALA 40.0060
LYS 50.0050
MET 60.0065
GLN 70.0064
ARG 80.0050
LEU 90.0061
VAL 100.0075
LEU 110.0060
LEU 120.0061
LEU 130.0062
ALA 140.0060
ILE 150.0060
SER 160.0047
LEU 170.0032
LEU 180.0033
LEU 190.0044
TYR 200.0038
GLN 210.0024
ASP 220.0025
LEU 230.0024
PRO 240.0023
VAL 250.0022
ARG 260.0032
SER 270.0027
GLU 280.0028
PHE 290.0028
GLU 300.0025
LEU 310.0031
ASP 320.0031
ARG 330.0027
ILE 340.0031
CYS 350.0035
GLY 360.0029
TYR 370.0030
GLY 380.0028
THR 390.0028
ALA 400.0028
ARG 410.0024
CYS 420.0036
ARG 430.0041
LYS 440.0055
LYS 450.0051
CYS 460.0033
ARG 470.0034
SER 480.0038
GLN 490.0032
GLU 500.0024
TYR 510.0026
ARG 520.0033
ILE 530.0036
GLY 540.0052
ARG 550.0063
CYS 560.0058
PRO 570.0069
ASN 580.0068
THR 590.0074
TYR 600.0060
ALA 610.0044
CYS 620.0036
CYS 630.0026
LEU 640.0022
ARG 650.0019
LYS 660.0030
TRP 670.0027
ASP 680.0024
GLU 690.0024
SER 700.0020
LEU 710.0021
LEU 720.0018
ASN 730.0010
ARG 740.0013
THR 750.0019
LYS 760.0024
PRO 770.0051
GLU 780.0053
ALA 790.0090
ALA 800.0098
ALA 810.0215
LYS 820.0176
LYS 830.0169
GLU 840.0175
MET 850.0146
ASN 860.0168
LEU 870.0130
SER 880.0173
VAL 890.0180
GLY 900.0251
LEU 910.0325
GLY 920.0505
GLY 930.0624
GLY 940.0543
SER 950.0376
ASN 960.0241
LEU 970.0158
SER 980.0135
VAL 990.0082
GLY 1000.0150
LEU 1010.0137
GLY 1020.0160
GLU 1030.0123
ILE 1040.0148
GLY 1050.0155
GLY 1060.0209
GLY 1070.0158
SER 1080.0128
LYS 1090.0067
LEU 1100.0091
LEU 1110.0170
ASP 1120.0182
ILE 1130.0158
ASN 1140.0251
LEU 1150.0262
GLY 1160.0447
ARG 1170.0635
GLY 1180.0365
GLY 1190.0536
GLY 1200.0705
SER 1210.0334
MET 1220.0235
VAL 1230.0217
ASP 1240.0153
LEU 1250.0136
THR 1260.0112
PHE 1270.0129
GLY 1280.0121
GLY 1290.0121
VAL 1300.0145
GLY 1310.0162
GLY 1320.0175
GLY 1330.0144
SER 1340.0167
THR 1350.0152
PHE 1360.0177
THR 1370.0197
PHE 1380.0180
PHE 1390.0219
PRO 1400.0224
LEU 1410.0315
VAL 1420.0422
ILE 1430.0402
GLY 1440.0521
GLY 1450.0538
GLY 1460.0255
SER 1470.0162
ASP 1480.0252
ALA 1490.0124
MET 1500.0142
TYR 1510.0112
LEU 1520.0134
GLY 1530.0154
PHE 1540.0188
ALA 1550.0218
ALA 1560.0243
GLY 1570.0180
GLY 1580.0114
GLY 1590.0075
SER 1600.0051
ALA 1610.0027
GLY 1620.0031
GLY 1630.0026
GLU 1640.0044
ASN 1650.0079
HIS 1660.0099
VAL 1670.0155
ALA 1680.0153
PHE 1690.0204
GLY 1700.0203
PRO 1710.0481
GLY 1720.0669
PRO 1730.0830
GLY 1740.0645
VAL 1750.0368
ASP 1760.0270
LEU 1770.0202
THR 1780.0182
PHE 1790.0128
GLY 1800.0147
GLY 1810.0219
VAL 1820.0244
GLN 1830.0267
PHE 1840.0264
ALA 1850.0320
MET 1860.0330
VAL 1870.0476
ASN 1880.0263
ASN 1890.0504
GLY 1900.0400
PRO 1910.0824
GLY 1920.0640
PRO 1930.0200
GLY 1940.0367
GLU 1950.0373
SER 1960.0415
PHE 1970.0269
THR 1980.0193
ALA 1990.0111
GLN 2000.0086
PRO 2010.0047
ALA 2020.0118
ASP 2030.0203
MET 2040.0182
GLN 2050.0137
ALA 2060.0146
GLY 2070.0108
ILE 2080.0107
LYS 2090.0152
GLY 2100.0213
PRO 2110.0281
GLY 2120.0179
PRO 2130.0331
GLY 2140.0136
GLY 2150.0285
SER 2160.0305
ILE 2170.0214
GLN 2180.0091
VAL 2190.0080
ILE 2200.0144
ASN 2210.0097
GLY 2220.0052
SER 2230.0106
THR 2240.0197
ILE 2250.0232
GLY 2260.0237
THR 2270.0167
GLY 2280.0053
SER 2290.0158
LYS 2300.0117
LYS 2310.0081
THR 2320.0097
ILE 2330.0066
LEU 2340.0125
ILE 2350.0126
TYR 2360.0145
SER 2370.0132
ILE 2380.0107
ILE 2390.0107
GLY 2400.0085
VAL 2410.0045
LYS 2420.0029
LYS 2430.0030
GLY 2440.0056
THR 2450.0063
LEU 2460.0102
ALA 2470.0111
TRP 2480.0134
ALA 2490.0147
ARG 2500.0174
THR 2510.0184
GLY 2520.0106
PHE 2530.0076
SER 2540.0075
PRO 2550.0118
ALA 2560.0267
LYS 2570.0302
LYS 2580.0080
LEU 2590.0310
ASN 2600.0433
ALA 2610.0510
GLY 2620.0378
VAL 2630.0316
VAL 2640.0256
ARG 2650.0144
VAL 2660.0161
PHE 2670.0125
PHE 2680.0112
LEU 2690.0083
ASN 2700.0072
GLN 2710.0024
LYS 2720.0021
LYS 2730.0028
ALA 2740.0033
LYS 2750.0033
ASP 2760.0042
VAL 2770.0040
LEU 2780.0034
ARG 2790.0040
LYS 2800.0047
THR 2810.0032
SER 2820.0072
ARG 2830.0071
PRO 2840.0115
MET 2850.0169
VAL 2860.0069
ASP 2870.0086
LEU 2880.0104
THR 2890.0194
PHE 2900.0199
GLY 2910.0126
GLY 2920.0312

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.