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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 63  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0874
GLU 270.0028
PRO 280.0025
CYS 290.0022
VAL 300.0018
GLU 310.0018
VAL 320.0017
VAL 330.0018
PRO 340.0019
ASN 350.0024
ILE 360.0024
THR 370.0022
TYR 380.0021
GLN 390.0018
CYS 400.0021
MET 410.0019
GLU 420.0018
LEU 430.0022
ASN 440.0026
PHE 450.0030
TYR 460.0036
LYS 470.0038
ILE 480.0036
PRO 490.0034
ASP 500.0038
ASN 510.0034
LEU 520.0030
PRO 530.0029
PHE 540.0032
SER 550.0028
THR 560.0027
LYS 570.0026
ASN 580.0023
LEU 590.0023
ASP 600.0021
LEU 610.0023
SER 620.0021
PHE 630.0020
ASN 640.0024
PRO 650.0029
LEU 660.0033
ARG 670.0036
HIS 680.0040
LEU 690.0040
GLY 700.0045
SER 710.0047
TYR 720.0043
SER 730.0039
PHE 740.0037
PHE 750.0040
SER 760.0036
PHE 770.0032
PRO 780.0033
GLU 790.0029
LEU 800.0029
GLN 810.0028
VAL 820.0024
LEU 830.0024
ASP 840.0022
LEU 850.0024
SER 860.0022
ARG 870.0021
CYS 880.0024
GLU 890.0028
ILE 900.0033
GLN 910.0039
THR 920.0043
ILE 930.0042
GLU 940.0046
ASP 950.0048
GLY 960.0044
ALA 970.0040
TYR 980.0037
GLN 990.0040
SER 1000.0037
LEU 1010.0033
SER 1020.0032
HIS 1030.0027
LEU 1040.0025
SER 1050.0025
THR 1060.0023
LEU 1070.0024
ILE 1080.0022
LEU 1090.0025
THR 1100.0024
GLY 1110.0025
ASN 1120.0026
PRO 1130.0031
ILE 1140.0037
GLN 1150.0043
SER 1160.0047
LEU 1170.0042
ALA 1180.0047
LEU 1190.0049
GLY 1200.0046
ALA 1210.0040
PHE 1220.0037
SER 1230.0040
GLY 1240.0036
LEU 1250.0031
SER 1260.0033
SER 1270.0026
LEU 1280.0025
GLN 1290.0025
LYS 1300.0022
LEU 1310.0023
VAL 1320.0024
ALA 1330.0028
VAL 1340.0030
GLU 1350.0032
THR 1360.0031
ASN 1370.0034
LEU 1380.0034
ALA 1390.0036
SER 1400.0035
LEU 1410.0033
GLU 1420.0040
ASN 1430.0038
PHE 1440.0036
PRO 1450.0036
ILE 1460.0035
GLY 1470.0037
HIS 1480.0035
LEU 1490.0031
LYS 1500.0032
THR 1510.0029
LEU 1520.0024
LYS 1530.0024
GLU 1540.0024
LEU 1550.0026
ASN 1560.0025
VAL 1570.0029
ALA 1580.0033
HIS 1590.0037
ASN 1600.0037
LEU 1610.0043
ILE 1620.0029
GLN 1630.0029
SER 1640.0030
PHE 1650.0031
LYS 1660.0031
LEU 1670.0035
PRO 1680.0035
GLU 1690.0036
TYR 1700.0034
PHE 1710.0034
SER 1720.0037
ASN 1730.0035
LEU 1740.0032
THR 1750.0034
ASN 1760.0031
LEU 1770.0026
GLU 1780.0027
HIS 1790.0027
LEU 1800.0028
ASP 1810.0027
LEU 1820.0030
SER 1830.0031
SER 1840.0033
ASN 1850.0034
LYS 1860.0036
ILE 1870.0020
GLN 1880.0014
SER 1890.0016
ILE 1900.0021
TYR 1910.0023
CYS 1920.0029
THR 1930.0030
ASP 1940.0028
LEU 1950.0030
ARG 1960.0033
VAL 1970.0035
LEU 1980.0035
HIS 1990.0039
GLN 2000.0041
MET 2010.0040
PRO 2020.0046
LEU 2030.0044
LEU 2040.0037
ASN 2050.0036
LEU 2060.0031
SER 2070.0031
LEU 2080.0029
ASP 2090.0027
LEU 2100.0025
SER 2110.0025
LEU 2120.0021
ASN 2130.0018
PRO 2140.0013
MET 2150.0014
ASN 2160.0011
PHE 2170.0011
ILE 2180.0015
GLN 2190.0019
PRO 2200.0022
GLY 2210.0027
ALA 2220.0028
PHE 2230.0030
LYS 2240.0038
GLU 2250.0042
ILE 2260.0036
ARG 2270.0041
LEU 2280.0036
HIS 2290.0040
LYS 2300.0036
LEU 2310.0030
THR 2320.0033
LEU 2330.0026
ARG 2340.0027
ASN 2350.0023
ASN 2360.0016
PHE 2370.0013
ASP 2380.0023
SER 2390.0028
LEU 2400.0025
ASN 2410.0027
VAL 2420.0013
MET 2430.0008
LYS 2440.0008
THR 2450.0014
CYS 2460.0013
ILE 2470.0014
GLN 2480.0018
GLY 2490.0019
LEU 2500.0023
ALA 2510.0029
GLY 2520.0040
LEU 2530.0036
GLU 2540.0042
VAL 2550.0040
HIS 2560.0048
ARG 2570.0048
LEU 2580.0039
VAL 2590.0037
LEU 2600.0028
GLY 2610.0028
GLU 2620.0034
PHE 2630.0036
ARG 2640.0048
ASN 2650.0038
GLU 2660.0035
GLY 2670.0036
ASN 2680.0036
LEU 2690.0036
GLU 2700.0045
LYS 2710.0044
PHE 2720.0035
ASP 2730.0031
LYS 2740.0023
SER 2750.0025
ALA 2760.0023
LEU 2770.0016
GLU 2780.0020
GLY 2790.0024
LEU 2800.0026
CYS 2810.0033
ASN 2820.0037
LEU 2830.0036
THR 2840.0045
ILE 2850.0044
GLU 2860.0053
GLU 2870.0053
PHE 2880.0044
ARG 2890.0042
LEU 2900.0035
ALA 2910.0041
TYR 2920.0043
LEU 2930.0037
ASP 2940.0050
TYR 2950.0053
TYR 2960.0062
LEU 2970.0047
ASP 2980.0052
GLY 2990.0040
ILE 3000.0029
ILE 3010.0034
ASP 3020.0029
LEU 3030.0025
PHE 3040.0024
ASN 3050.0031
CYS 3060.0039
LEU 3070.0039
THR 3080.0041
ASN 3090.0053
VAL 3100.0053
SER 3110.0060
SER 3120.0061
PHE 3130.0049
SER 3140.0048
LEU 3150.0041
VAL 3160.0049
SER 3170.0058
VAL 3180.0046
THR 3190.0051
ILE 3200.0045
GLU 3210.0056
ARG 3220.0048
VAL 3230.0036
LYS 3240.0039
ASP 3250.0038
PHE 3260.0031
SER 3270.0027
TYR 3280.0035
ASN 3290.0043
PHE 3300.0045
GLY 3310.0057
TRP 3320.0057
GLN 3330.0063
HIS 3340.0061
LEU 3350.0054
GLU 3360.0054
LEU 3370.0049
VAL 3380.0064
ASN 3390.0070
CYS 3400.0052
LYS 3410.0059
PHE 3420.0048
GLY 3430.0057
GLN 3440.0048
PHE 3450.0037
PRO 3460.0033
THR 3470.0029
LEU 3480.0031
LYS 3490.0036
LEU 3500.0044
LYS 3510.0053
SER 3520.0058
LEU 3530.0057
LYS 3540.0061
ARG 3550.0059
LEU 3560.0056
THR 3570.0068
PHE 3580.0054
THR 3590.0066
SER 3600.0072
ASN 3610.0056
LYS 3620.0069
GLY 3630.0062
GLY 3640.0056
ASN 3650.0045
ALA 3660.0042
PHE 3670.0031
SER 3680.0028
GLU 3690.0029
VAL 3700.0033
ASP 3710.0038
LEU 3720.0048
PRO 3730.0051
SER 3740.0054
LEU 3750.0053
GLU 3760.0059
PHE 3770.0070
LEU 3780.0063
ASP 3790.0065
LEU 3800.0058
SER 3810.0064
ARG 3820.0069
ASN 3830.0056
GLY 3840.0057
LEU 3850.0043
SER 3860.0036
PHE 3870.0034
LYS 3880.0026
GLY 3890.0026
CYS 3900.0035
CYS 3910.0041
SER 3920.0042
GLN 3930.0047
SER 3940.0041
ASP 3950.0039
PHE 3960.0045
GLY 3970.0043
THR 3980.0050
ILE 3990.0056
SER 4000.0061
LEU 4010.0059
LYS 4020.0074
TYR 4030.0072
LEU 4040.0065
ASP 4050.0066
LEU 4060.0059
SER 4070.0062
PHE 4080.0064
ASN 4090.0054
GLY 4100.0049
VAL 4110.0041
ILE 4120.0038
THR 4130.0029
MET 4140.0030
SER 4150.0026
SER 4160.0035
ASN 4170.0042
PHE 4180.0049
LEU 4190.0050
GLY 4200.0058
LEU 4210.0060
GLU 4220.0066
GLN 4230.0074
LEU 4240.0070
GLU 4250.0076
HIS 4260.0074
LEU 4270.0064
ASP 4280.0064
PHE 4290.0055
GLN 4300.0062
HIS 4310.0062
SER 4320.0054
ASN 4330.0045
LEU 4340.0037
LYS 4350.0027
GLN 4360.0018
MET 4370.0022
SER 4380.0012
GLU 4390.0012
PHE 4400.0024
SER 4410.0033
VAL 4420.0036
PHE 4430.0045
LEU 4440.0047
SER 4450.0057
LEU 4460.0060
ARG 4470.0068
ASN 4480.0076
LEU 4490.0069
ILE 4500.0074
TYR 4510.0069
LEU 4520.0057
ASP 4530.0056
ILE 4540.0045
SER 4550.0051
HIS 4560.0052
THR 4570.0044
HIS 4580.0039
THR 4590.0025
ARG 4600.0019
VAL 4610.0007
ALA 4620.0010
PHE 4630.0013
ASN 4640.0021
GLY 4650.0029
ILE 4660.0024
PHE 4670.0033
ASN 4680.0041
GLY 4690.0054
LEU 4700.0053
SER 4710.0060
SER 4720.0067
LEU 4730.0057
GLU 4740.0059
VAL 4750.0055
LEU 4760.0043
LYS 4770.0043
MET 4780.0034
ALA 4790.0040
GLY 4800.0044
ASN 4810.0031
SER 4820.0030
PHE 4830.0025
GLN 4840.0033
GLU 4850.0047
ASN 4860.0041
PHE 4870.0037
LEU 4880.0025
PRO 4890.0027
ASP 4900.0029
ILE 4910.0022
PHE 4920.0024
THR 4930.0037
GLU 4940.0045
LEU 4950.0040
ARG 4960.0045
ASN 4970.0049
LEU 4980.0037
THR 4990.0037
PHE 5000.0033
LEU 5010.0023
ASP 5020.0021
LEU 5030.0016
SER 5040.0028
GLN 5050.0037
CYS 5060.0030
GLN 5070.0043
LEU 5080.0037
GLU 5090.0046
GLN 5100.0044
LEU 5110.0036
SER 5120.0038
PRO 5130.0042
THR 5140.0038
ALA 5150.0027
PHE 5160.0022
ASN 5170.0032
SER 5180.0033
LEU 5190.0024
SER 5200.0028
SER 5210.0026
LEU 5220.0013
GLN 5230.0012
VAL 5240.0013
LEU 5250.0011
ASN 5260.0018
MET 5270.0024
SER 5280.0027
HIS 5290.0035
ASN 5300.0037
ASN 5310.0043
PHE 5320.0037
PHE 5330.0038
SER 5340.0037
LEU 5350.0035
ASP 5360.0035
THR 5370.0034
PHE 5380.0034
PRO 5390.0031
TYR 5400.0029
LYS 5410.0030
CYS 5420.0029
LEU 5430.0021
ASN 5440.0022
SER 5450.0013
LEU 5460.0017
GLN 5470.0026
VAL 5480.0027
LEU 5490.0029
ASP 5500.0030
TYR 5510.0033
SER 5520.0034
LEU 5530.0035
ASN 5540.0035
HIS 5550.0035
ILE 5560.0034
MET 5570.0027
THR 5580.0026
SER 5590.0028
LYS 5600.0029
LYS 5610.0031
GLN 5620.0031
GLU 5630.0030
LEU 5640.0031
GLN 5650.0031
HIS 5660.0030
PHE 5670.0036
PRO 5680.0033
SER 5690.0037
SER 5700.0033
LEU 5710.0034
ALA 5720.0045
PHE 5730.0044
LEU 5740.0042
ASN 5750.0041
LEU 5760.0038
THR 5770.0041
GLN 5780.0041
ASN 5790.0034
ASP 5800.0028
PHE 5810.0021
ALA 5820.0024
CYS 5830.0028
THR 5840.0038
CYS 5850.0045
GLU 5860.0038
HIS 5870.0016
GLN 5880.0025
SER 5890.0031
PHE 5900.0021
LEU 5910.0006
GLN 5920.0016
TRP 5930.0025
ILE 5940.0022
LYS 5950.0018
ASP 5960.0032
GLN 5970.0038
ARG 5980.0036
GLN 5990.0046
LEU 6000.0050
LEU 6010.0044
VAL 6020.0054
GLU 6030.0053
VAL 6040.0039
GLU 6050.0046
ARG 6060.0050
MET 6070.0044
GLU 6080.0045
CYS 6090.0039
ALA 6100.0049
THR 6110.0047
PRO 6120.0069
SER 6130.0093
ASP 6140.0100
LYS 6150.0074
GLN 6160.0079
GLY 6170.0073
MET 6180.0058
PRO 6190.0044
VAL 6200.0025
LEU 6210.0017
SER 6220.0033
LEU 6230.0038
ASN 6240.0053
ILE 6250.0051
THR 6260.0079
CYS 6270.0173
GLU 10.0113
ALA 20.0118
ALA 30.0137
ALA 40.0088
LYS 50.0072
MET 60.0110
GLN 70.0100
ARG 80.0075
LEU 90.0111
VAL 100.0136
LEU 110.0107
LEU 120.0115
LEU 130.0113
ALA 140.0101
ILE 150.0103
SER 160.0074
LEU 170.0043
LEU 180.0048
LEU 190.0072
TYR 200.0057
GLN 210.0042
ASP 220.0045
LEU 230.0046
PRO 240.0047
VAL 250.0046
ARG 260.0058
SER 270.0054
GLU 280.0053
PHE 290.0052
GLU 300.0053
LEU 310.0057
ASP 320.0049
ARG 330.0050
ILE 340.0063
CYS 350.0069
GLY 360.0060
TYR 370.0066
GLY 380.0061
THR 390.0066
ALA 400.0064
ARG 410.0049
CYS 420.0052
ARG 430.0058
LYS 440.0096
LYS 450.0098
CYS 460.0064
ARG 470.0039
SER 480.0036
GLN 490.0029
GLU 500.0051
TYR 510.0076
ARG 520.0108
ILE 530.0135
GLY 540.0155
ARG 550.0155
CYS 560.0118
PRO 570.0124
ASN 580.0108
THR 590.0148
TYR 600.0117
ALA 610.0097
CYS 620.0087
CYS 630.0068
LEU 640.0075
ARG 650.0055
LYS 660.0038
TRP 670.0042
ASP 680.0037
GLU 690.0036
SER 700.0038
LEU 710.0037
LEU 720.0048
ASN 730.0051
ARG 740.0046
THR 750.0053
LYS 760.0147
PRO 770.0213
GLU 780.0193
ALA 790.0287
ALA 800.0345
ALA 810.0549
LYS 820.0469
LYS 830.0394
GLU 840.0348
MET 850.0252
ASN 860.0136
LEU 870.0096
SER 880.0060
VAL 890.0093
GLY 900.0169
LEU 910.0287
GLY 920.0545
GLY 930.0863
GLY 940.0874
SER 950.0663
ASN 960.0255
LEU 970.0208
SER 980.0125
VAL 990.0195
GLY 1000.0243
LEU 1010.0308
GLY 1020.0372
GLU 1030.0264
ILE 1040.0312
GLY 1050.0283
GLY 1060.0587
GLY 1070.0476
SER 1080.0373
LYS 1090.0186
LEU 1100.0122
LEU 1110.0088
ASP 1120.0100
ILE 1130.0121
ASN 1140.0236
LEU 1150.0247
GLY 1160.0510
ARG 1170.0631
GLY 1180.0430
GLY 1190.0352
GLY 1200.0310
SER 1210.0166
MET 1220.0170
VAL 1230.0126
ASP 1240.0121
LEU 1250.0084
THR 1260.0069
PHE 1270.0083
GLY 1280.0159
GLY 1290.0201
VAL 1300.0236
GLY 1310.0258
GLY 1320.0154
GLY 1330.0178
SER 1340.0098
THR 1350.0177
PHE 1360.0139
THR 1370.0164
PHE 1380.0140
PHE 1390.0177
PRO 1400.0168
LEU 1410.0128
VAL 1420.0075
ILE 1430.0158
GLY 1440.0204
GLY 1450.0278
GLY 1460.0284
SER 1470.0284
ASP 1480.0310
ALA 1490.0254
MET 1500.0203
TYR 1510.0158
LEU 1520.0151
GLY 1530.0174
PHE 1540.0175
ALA 1550.0204
ALA 1560.0187
GLY 1570.0245
GLY 1580.0236
GLY 1590.0281
SER 1600.0303
ALA 1610.0305
GLY 1620.0280
GLY 1630.0234
GLU 1640.0149
ASN 1650.0067
HIS 1660.0035
VAL 1670.0074
ALA 1680.0111
PHE 1690.0163
GLY 1700.0185
PRO 1710.0327
GLY 1720.0277
PRO 1730.0246
GLY 1740.0152
VAL 1750.0129
ASP 1760.0072
LEU 1770.0045
THR 1780.0068
PHE 1790.0137
GLY 1800.0223
GLY 1810.0265
VAL 1820.0224
GLN 1830.0122
PHE 1840.0100
ALA 1850.0065
MET 1860.0160
VAL 1870.0082
ASN 1880.0062
ASN 1890.0178
GLY 1900.0183
PRO 1910.0529
GLY 1920.0312
PRO 1930.0319
GLY 1940.0273
GLU 1950.0052
SER 1960.0050
PHE 1970.0051
THR 1980.0093
ALA 1990.0147
GLN 2000.0087
PRO 2010.0064
ALA 2020.0079
ASP 2030.0065
MET 2040.0136
GLN 2050.0178
ALA 2060.0133
GLY 2070.0078
ILE 2080.0087
LYS 2090.0048
GLY 2100.0037
PRO 2110.0079
GLY 2120.0187
PRO 2130.0273
GLY 2140.0161
GLY 2150.0258
SER 2160.0150
ILE 2170.0459
GLN 2180.0243
VAL 2190.0450
ILE 2200.0433
ASN 2210.0352
GLY 2220.0318
SER 2230.0274
THR 2240.0235
ILE 2250.0206
GLY 2260.0055
THR 2270.0210
GLY 2280.0308
SER 2290.0439
LYS 2300.0316
LYS 2310.0249
THR 2320.0214
ILE 2330.0219
LEU 2340.0181
ILE 2350.0209
TYR 2360.0153
SER 2370.0200
ILE 2380.0198
ILE 2390.0206
GLY 2400.0211
VAL 2410.0171
LYS 2420.0125
LYS 2430.0128
GLY 2440.0144
THR 2450.0126
LEU 2460.0124
ALA 2470.0169
TRP 2480.0207
ALA 2490.0297
ARG 2500.0332
THR 2510.0327
GLY 2520.0268
PHE 2530.0173
SER 2540.0117
PRO 2550.0072
ALA 2560.0044
LYS 2570.0074
LYS 2580.0091
LEU 2590.0121
ASN 2600.0160
ALA 2610.0332
GLY 2620.0201
VAL 2630.0192
VAL 2640.0151
ARG 2650.0103
VAL 2660.0083
PHE 2670.0076
PHE 2680.0104
LEU 2690.0066
ASN 2700.0113
GLN 2710.0075
LYS 2720.0074
LYS 2730.0088
ALA 2740.0085
LYS 2750.0073
ASP 2760.0064
VAL 2770.0051
LEU 2780.0036
ARG 2790.0021
LYS 2800.0038
THR 2810.0036
SER 2820.0044
ARG 2830.0022
PRO 2840.0041
MET 2850.0058
VAL 2860.0044
ASP 2870.0044
LEU 2880.0038
THR 2890.0042
PHE 2900.0063
GLY 2910.0046
GLY 2920.0086

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.