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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 64  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0598
GLU 270.0184
PRO 280.0162
CYS 290.0120
VAL 300.0151
GLU 310.0194
VAL 320.0211
VAL 330.0243
PRO 340.0248
ASN 350.0204
ILE 360.0187
THR 370.0156
TYR 380.0111
GLN 390.0081
CYS 400.0048
MET 410.0041
GLU 420.0063
LEU 430.0082
ASN 440.0113
PHE 450.0103
TYR 460.0133
LYS 470.0132
ILE 480.0086
PRO 490.0079
ASP 500.0102
ASN 510.0129
LEU 520.0106
PRO 530.0123
PHE 540.0092
SER 550.0123
THR 560.0105
LYS 570.0123
ASN 580.0114
LEU 590.0071
ASP 600.0067
LEU 610.0058
SER 620.0079
PHE 630.0094
ASN 640.0094
PRO 650.0128
LEU 660.0116
ARG 670.0133
HIS 680.0125
LEU 690.0108
GLY 700.0104
SER 710.0094
TYR 720.0087
SER 730.0085
PHE 740.0061
PHE 750.0050
SER 760.0039
PHE 770.0043
PRO 780.0062
GLU 790.0086
LEU 800.0080
GLN 810.0110
VAL 820.0106
LEU 830.0095
ASP 840.0100
LEU 850.0105
SER 860.0118
ARG 870.0118
CYS 880.0110
GLU 890.0127
ILE 900.0123
GLN 910.0139
THR 920.0127
ILE 930.0117
GLU 940.0112
ASP 950.0108
GLY 960.0099
ALA 970.0105
TYR 980.0099
GLN 990.0098
SER 1000.0083
LEU 1010.0090
SER 1020.0105
HIS 1030.0103
LEU 1040.0102
SER 1050.0111
THR 1060.0111
LEU 1070.0114
ILE 1080.0117
LEU 1090.0120
THR 1100.0125
GLY 1110.0129
ASN 1120.0118
PRO 1130.0125
ILE 1140.0123
GLN 1150.0127
SER 1160.0122
LEU 1170.0099
ALA 1180.0096
LEU 1190.0093
GLY 1200.0099
ALA 1210.0103
PHE 1220.0105
SER 1230.0104
GLY 1240.0102
LEU 1250.0103
SER 1260.0103
SER 1270.0096
LEU 1280.0095
GLN 1290.0096
LYS 1300.0101
LEU 1310.0095
VAL 1320.0107
ALA 1330.0103
VAL 1340.0110
GLU 1350.0113
THR 1360.0107
ASN 1370.0095
LEU 1380.0070
ALA 1390.0055
SER 1400.0033
LEU 1410.0022
GLU 1420.0025
ASN 1430.0048
PHE 1440.0054
PRO 1450.0060
ILE 1460.0073
GLY 1470.0047
HIS 1480.0060
LEU 1490.0077
LYS 1500.0080
THR 1510.0100
LEU 1520.0088
LYS 1530.0104
GLU 1540.0099
LEU 1550.0081
ASN 1560.0087
VAL 1570.0068
ALA 1580.0077
HIS 1590.0088
ASN 1600.0075
LEU 1610.0071
ILE 1620.0051
GLN 1630.0071
SER 1640.0071
PHE 1650.0063
LYS 1660.0085
LEU 1670.0062
PRO 1680.0056
GLU 1690.0080
TYR 1700.0064
PHE 1710.0083
SER 1720.0090
ASN 1730.0086
LEU 1740.0085
THR 1750.0116
ASN 1760.0127
LEU 1770.0099
GLU 1780.0112
HIS 1790.0096
LEU 1800.0067
ASP 1810.0063
LEU 1820.0033
SER 1830.0045
SER 1840.0062
ASN 1850.0050
LYS 1860.0065
ILE 1870.0065
GLN 1880.0096
SER 1890.0110
ILE 1900.0114
TYR 1910.0154
CYS 1920.0176
THR 1930.0178
ASP 1940.0136
LEU 1950.0146
ARG 1960.0176
VAL 1970.0150
LEU 1980.0155
HIS 1990.0198
GLN 2000.0209
MET 2010.0198
PRO 2020.0218
LEU 2030.0222
LEU 2040.0175
ASN 2050.0168
LEU 2060.0118
SER 2070.0096
LEU 2080.0066
ASP 2090.0046
LEU 2100.0017
SER 2110.0026
LEU 2120.0042
ASN 2130.0039
PRO 2140.0073
MET 2150.0073
ASN 2160.0108
PHE 2170.0123
ILE 2180.0121
GLN 2190.0155
PRO 2200.0166
GLY 2210.0181
ALA 2220.0154
PHE 2230.0144
LYS 2240.0179
GLU 2250.0193
ILE 2260.0161
ARG 2270.0136
LEU 2280.0113
HIS 2290.0122
LYS 2300.0090
LEU 2310.0058
THR 2320.0038
LEU 2330.0017
ARG 2340.0014
ASN 2350.0023
ASN 2360.0022
PHE 2370.0048
ASP 2380.0064
SER 2390.0063
LEU 2400.0055
ASN 2410.0075
VAL 2420.0080
MET 2430.0058
LYS 2440.0069
THR 2450.0093
CYS 2460.0085
ILE 2470.0073
GLN 2480.0097
GLY 2490.0106
LEU 2500.0098
ALA 2510.0115
GLY 2520.0117
LEU 2530.0100
GLU 2540.0107
VAL 2550.0090
HIS 2560.0103
ARG 2570.0069
LEU 2580.0050
VAL 2590.0043
LEU 2600.0026
GLY 2610.0027
GLU 2620.0023
PHE 2630.0038
ARG 2640.0040
ASN 2650.0055
GLU 2660.0052
GLY 2670.0046
ASN 2680.0035
LEU 2690.0034
GLU 2700.0048
LYS 2710.0039
PHE 2720.0017
ASP 2730.0018
LYS 2740.0027
SER 2750.0031
ALA 2760.0034
LEU 2770.0036
GLU 2780.0044
GLY 2790.0055
LEU 2800.0056
CYS 2810.0065
ASN 2820.0070
LEU 2830.0069
THR 2840.0078
ILE 2850.0070
GLU 2860.0082
GLU 2870.0066
PHE 2880.0054
ARG 2890.0050
LEU 2900.0040
ALA 2910.0039
TYR 2920.0021
LEU 2930.0017
ASP 2940.0018
TYR 2950.0016
TYR 2960.0016
LEU 2970.0046
ASP 2980.0058
GLY 2990.0061
ILE 3000.0061
ILE 3010.0075
ASP 3020.0062
LEU 3030.0055
PHE 3040.0060
ASN 3050.0068
CYS 3060.0067
LEU 3070.0064
THR 3080.0068
ASN 3090.0070
VAL 3100.0068
SER 3110.0072
SER 3120.0070
PHE 3130.0062
SER 3140.0054
LEU 3150.0046
VAL 3160.0038
SER 3170.0024
VAL 3180.0034
THR 3190.0041
ILE 3200.0050
GLU 3210.0058
ARG 3220.0071
VAL 3230.0064
LYS 3240.0078
ASP 3250.0083
PHE 3260.0077
SER 3270.0082
TYR 3280.0089
ASN 3290.0094
PHE 3300.0090
GLY 3310.0095
TRP 3320.0084
GLN 3330.0086
HIS 3340.0075
LEU 3350.0066
GLU 3360.0059
LEU 3370.0048
VAL 3380.0047
ASN 3390.0043
CYS 3400.0037
LYS 3410.0038
PHE 3420.0048
GLY 3430.0062
GLN 3440.0057
PHE 3450.0047
PRO 3460.0056
THR 3470.0068
LEU 3480.0071
LYS 3490.0082
LEU 3500.0089
LYS 3510.0102
SER 3520.0098
LEU 3530.0086
LYS 3540.0088
ARG 3550.0079
LEU 3560.0073
THR 3570.0076
PHE 3580.0062
THR 3590.0067
SER 3600.0068
ASN 3610.0055
LYS 3620.0064
GLY 3630.0062
GLY 3640.0060
ASN 3650.0052
ALA 3660.0049
PHE 3670.0056
SER 3680.0055
GLU 3690.0060
VAL 3700.0067
ASP 3710.0079
LEU 3720.0082
PRO 3730.0092
SER 3740.0100
LEU 3750.0091
GLU 3760.0102
PHE 3770.0105
LEU 3780.0095
ASP 3790.0094
LEU 3800.0086
SER 3810.0094
ARG 3820.0097
ASN 3830.0077
GLY 3840.0082
LEU 3850.0065
SER 3860.0061
PHE 3870.0073
LYS 3880.0067
GLY 3890.0069
CYS 3900.0080
CYS 3910.0086
SER 3920.0086
GLN 3930.0088
SER 3940.0080
ASP 3950.0078
PHE 3960.0083
GLY 3970.0080
THR 3980.0091
ILE 3990.0104
SER 4000.0111
LEU 4010.0106
LYS 4020.0130
TYR 4030.0125
LEU 4040.0115
ASP 4050.0114
LEU 4060.0106
SER 4070.0112
PHE 4080.0111
ASN 4090.0093
GLY 4100.0085
VAL 4110.0078
ILE 4120.0087
THR 4130.0081
MET 4140.0084
SER 4150.0078
SER 4160.0084
ASN 4170.0097
PHE 4180.0100
LEU 4190.0099
GLY 4200.0105
LEU 4210.0110
GLU 4220.0124
GLN 4230.0130
LEU 4240.0128
GLU 4250.0137
HIS 4260.0134
LEU 4270.0124
ASP 4280.0123
PHE 4290.0108
GLN 4300.0119
HIS 4310.0115
SER 4320.0103
ASN 4330.0094
LEU 4340.0090
LYS 4350.0080
GLN 4360.0075
MET 4370.0078
SER 4380.0067
GLU 4390.0067
PHE 4400.0073
SER 4410.0081
VAL 4420.0092
PHE 4430.0100
LEU 4440.0098
SER 4450.0107
LEU 4460.0112
ARG 4470.0115
ASN 4480.0126
LEU 4490.0121
ILE 4500.0128
TYR 4510.0125
LEU 4520.0112
ASP 4530.0111
ILE 4540.0097
SER 4550.0103
HIS 4560.0100
THR 4570.0094
HIS 4580.0083
THR 4590.0068
ARG 4600.0053
VAL 4610.0042
ALA 4620.0035
PHE 4630.0038
ASN 4640.0036
GLY 4650.0058
ILE 4660.0065
PHE 4670.0072
ASN 4680.0076
GLY 4690.0093
LEU 4700.0093
SER 4710.0094
SER 4720.0105
LEU 4730.0096
GLU 4740.0099
VAL 4750.0097
LEU 4760.0084
LYS 4770.0086
MET 4780.0072
ALA 4790.0078
GLY 4800.0082
ASN 4810.0063
SER 4820.0060
PHE 4830.0040
GLN 4840.0043
GLU 4850.0065
ASN 4860.0064
PHE 4870.0056
LEU 4880.0035
PRO 4890.0029
ASP 4900.0033
ILE 4910.0024
PHE 4920.0033
THR 4930.0048
GLU 4940.0066
LEU 4950.0060
ARG 4960.0065
ASN 4970.0073
LEU 4980.0057
THR 4990.0056
PHE 5000.0054
LEU 5010.0043
ASP 5020.0038
LEU 5030.0029
SER 5040.0047
GLN 5050.0063
CYS 5060.0051
GLN 5070.0078
LEU 5080.0066
GLU 5090.0083
GLN 5100.0077
LEU 5110.0063
SER 5120.0062
PRO 5130.0074
THR 5140.0063
ALA 5150.0042
PHE 5160.0038
ASN 5170.0055
SER 5180.0055
LEU 5190.0039
SER 5200.0054
SER 5210.0045
LEU 5220.0024
GLN 5230.0016
VAL 5240.0015
LEU 5250.0018
ASN 5260.0028
MET 5270.0040
SER 5280.0043
HIS 5290.0059
ASN 5300.0066
ASN 5310.0080
PHE 5320.0082
PHE 5330.0088
SER 5340.0086
LEU 5350.0080
ASP 5360.0082
THR 5370.0078
PHE 5380.0080
PRO 5390.0070
TYR 5400.0065
LYS 5410.0071
CYS 5420.0068
LEU 5430.0052
ASN 5440.0059
SER 5450.0041
LEU 5460.0039
GLN 5470.0049
VAL 5480.0051
LEU 5490.0057
ASP 5500.0059
TYR 5510.0066
SER 5520.0069
LEU 5530.0072
ASN 5540.0075
HIS 5550.0080
ILE 5560.0080
MET 5570.0076
THR 5580.0075
SER 5590.0077
LYS 5600.0085
LYS 5610.0089
GLN 5620.0085
GLU 5630.0079
LEU 5640.0077
GLN 5650.0076
HIS 5660.0071
PHE 5670.0078
PRO 5680.0071
SER 5690.0080
SER 5700.0066
LEU 5710.0068
ALA 5720.0083
PHE 5730.0083
LEU 5740.0081
ASN 5750.0082
LEU 5760.0079
THR 5770.0084
GLN 5780.0090
ASN 5790.0084
ASP 5800.0078
PHE 5810.0064
ALA 5820.0068
CYS 5830.0062
THR 5840.0074
CYS 5850.0075
GLU 5860.0051
HIS 5870.0015
GLN 5880.0030
SER 5890.0042
PHE 5900.0037
LEU 5910.0013
GLN 5920.0020
TRP 5930.0041
ILE 5940.0039
LYS 5950.0024
ASP 5960.0052
GLN 5970.0062
ARG 5980.0057
GLN 5990.0075
LEU 6000.0089
LEU 6010.0081
VAL 6020.0099
GLU 6030.0097
VAL 6040.0072
GLU 6050.0083
ARG 6060.0098
MET 6070.0089
GLU 6080.0097
CYS 6090.0093
ALA 6100.0122
THR 6110.0119
PRO 6120.0154
SER 6130.0210
ASP 6140.0217
LYS 6150.0160
GLN 6160.0176
GLY 6170.0154
MET 6180.0121
PRO 6190.0088
VAL 6200.0058
LEU 6210.0030
SER 6220.0067
LEU 6230.0089
ASN 6240.0125
ILE 6250.0114
THR 6260.0174
CYS 6270.0378
GLU 10.0301
ALA 20.0138
ALA 30.0240
ALA 40.0200
LYS 50.0048
MET 60.0186
GLN 70.0197
ARG 80.0129
LEU 90.0209
VAL 100.0273
LEU 110.0202
LEU 120.0206
LEU 130.0190
ALA 140.0166
ILE 150.0165
SER 160.0156
LEU 170.0135
LEU 180.0108
LEU 190.0121
TYR 200.0256
GLN 210.0278
ASP 220.0166
LEU 230.0180
PRO 240.0261
VAL 250.0385
ARG 260.0265
SER 270.0199
GLU 280.0203
PHE 290.0185
GLU 300.0132
LEU 310.0085
ASP 320.0092
ARG 330.0076
ILE 340.0057
CYS 350.0060
GLY 360.0067
TYR 370.0077
GLY 380.0051
THR 390.0061
ALA 400.0048
ARG 410.0047
CYS 420.0054
ARG 430.0088
LYS 440.0118
LYS 450.0107
CYS 460.0092
ARG 470.0103
SER 480.0107
GLN 490.0108
GLU 500.0097
TYR 510.0091
ARG 520.0060
ILE 530.0065
GLY 540.0078
ARG 550.0104
CYS 560.0104
PRO 570.0152
ASN 580.0172
THR 590.0160
TYR 600.0127
ALA 610.0069
CYS 620.0067
CYS 630.0059
LEU 640.0058
ARG 650.0075
LYS 660.0114
TRP 670.0115
ASP 680.0095
GLU 690.0091
SER 700.0082
LEU 710.0090
LEU 720.0111
ASN 730.0103
ARG 740.0087
THR 750.0103
LYS 760.0093
PRO 770.0090
GLU 780.0101
ALA 790.0095
ALA 800.0089
ALA 810.0208
LYS 820.0189
LYS 830.0174
GLU 840.0171
MET 850.0160
ASN 860.0108
LEU 870.0081
SER 880.0032
VAL 890.0043
GLY 900.0096
LEU 910.0206
GLY 920.0383
GLY 930.0598
GLY 940.0560
SER 950.0415
ASN 960.0145
LEU 970.0118
SER 980.0060
VAL 990.0124
GLY 1000.0163
LEU 1010.0188
GLY 1020.0188
GLU 1030.0115
ILE 1040.0124
GLY 1050.0131
GLY 1060.0323
GLY 1070.0264
SER 1080.0211
LYS 1090.0097
LEU 1100.0079
LEU 1110.0075
ASP 1120.0049
ILE 1130.0023
ASN 1140.0051
LEU 1150.0064
GLY 1160.0098
ARG 1170.0115
GLY 1180.0117
GLY 1190.0114
GLY 1200.0101
SER 1210.0071
MET 1220.0035
VAL 1230.0023
ASP 1240.0041
LEU 1250.0069
THR 1260.0094
PHE 1270.0116
GLY 1280.0149
GLY 1290.0159
VAL 1300.0185
GLY 1310.0154
GLY 1320.0115
GLY 1330.0053
SER 1340.0094
THR 1350.0086
PHE 1360.0112
THR 1370.0116
PHE 1380.0092
PHE 1390.0097
PRO 1400.0077
LEU 1410.0066
VAL 1420.0108
ILE 1430.0116
GLY 1440.0184
GLY 1450.0237
GLY 1460.0202
SER 1470.0161
ASP 1480.0110
ALA 1490.0093
MET 1500.0057
TYR 1510.0075
LEU 1520.0077
GLY 1530.0099
PHE 1540.0118
ALA 1550.0150
ALA 1560.0172
GLY 1570.0144
GLY 1580.0099
GLY 1590.0068
SER 1600.0033
ALA 1610.0037
GLY 1620.0049
GLY 1630.0078
GLU 1640.0089
ASN 1650.0044
HIS 1660.0066
VAL 1670.0054
ALA 1680.0044
PHE 1690.0039
GLY 1700.0028
PRO 1710.0037
GLY 1720.0037
PRO 1730.0042
GLY 1740.0033
VAL 1750.0032
ASP 1760.0064
LEU 1770.0053
THR 1780.0085
PHE 1790.0085
GLY 1800.0123
GLY 1810.0222
VAL 1820.0219
GLN 1830.0182
PHE 1840.0153
ALA 1850.0142
MET 1860.0038
VAL 1870.0028
ASN 1880.0062
ASN 1890.0100
GLY 1900.0130
PRO 1910.0149
GLY 1920.0142
PRO 1930.0081
GLY 1940.0091
GLU 1950.0059
SER 1960.0062
PHE 1970.0042
THR 1980.0037
ALA 1990.0026
GLN 2000.0028
PRO 2010.0016
ALA 2020.0025
ASP 2030.0022
MET 2040.0021
GLN 2050.0034
ALA 2060.0017
GLY 2070.0043
ILE 2080.0054
LYS 2090.0067
GLY 2100.0119
PRO 2110.0070
GLY 2120.0057
PRO 2130.0050
GLY 2140.0051
GLY 2150.0061
SER 2160.0087
ILE 2170.0092
GLN 2180.0058
VAL 2190.0179
ILE 2200.0210
ASN 2210.0231
GLY 2220.0155
SER 2230.0130
THR 2240.0098
ILE 2250.0050
GLY 2260.0082
THR 2270.0074
GLY 2280.0095
SER 2290.0106
LYS 2300.0075
LYS 2310.0023
THR 2320.0040
ILE 2330.0106
LEU 2340.0144
ILE 2350.0199
TYR 2360.0269
SER 2370.0266
ILE 2380.0301
ILE 2390.0222
GLY 2400.0295
VAL 2410.0190
LYS 2420.0115
LYS 2430.0114
GLY 2440.0161
THR 2450.0143
LEU 2460.0237
ALA 2470.0205
TRP 2480.0257
ALA 2490.0280
ARG 2500.0302
THR 2510.0235
GLY 2520.0248
PHE 2530.0118
SER 2540.0140
PRO 2550.0031
ALA 2560.0082
LYS 2570.0077
LYS 2580.0075
LEU 2590.0185
ASN 2600.0285
ALA 2610.0295
GLY 2620.0222
VAL 2630.0180
VAL 2640.0242
ARG 2650.0220
VAL 2660.0211
PHE 2670.0226
PHE 2680.0202
LEU 2690.0238
ASN 2700.0258
GLN 2710.0206
LYS 2720.0193
LYS 2730.0247
ALA 2740.0269
LYS 2750.0252
ASP 2760.0231
VAL 2770.0188
LEU 2780.0139
ARG 2790.0106
LYS 2800.0144
THR 2810.0134
SER 2820.0128
ARG 2830.0115
PRO 2840.0109
MET 2850.0095
VAL 2860.0170
ASP 2870.0195
LEU 2880.0211
THR 2890.0243
PHE 2900.0176
GLY 2910.0268
GLY 2920.0197

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.