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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 66  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0482
GLU 270.0142
PRO 280.0071
CYS 290.0067
VAL 300.0149
GLU 310.0229
VAL 320.0293
VAL 330.0345
PRO 340.0345
ASN 350.0312
ILE 360.0287
THR 370.0240
TYR 380.0157
GLN 390.0138
CYS 400.0071
MET 410.0153
GLU 420.0193
LEU 430.0170
ASN 440.0208
PHE 450.0161
TYR 460.0201
LYS 470.0167
ILE 480.0094
PRO 490.0079
ASP 500.0141
ASN 510.0160
LEU 520.0149
PRO 530.0205
PHE 540.0195
SER 550.0221
THR 560.0177
LYS 570.0186
ASN 580.0170
LEU 590.0110
ASP 600.0124
LEU 610.0108
SER 620.0160
PHE 630.0197
ASN 640.0178
PRO 650.0203
LEU 660.0162
ARG 670.0150
HIS 680.0128
LEU 690.0102
GLY 700.0093
SER 710.0072
TYR 720.0053
SER 730.0062
PHE 740.0041
PHE 750.0056
SER 760.0081
PHE 770.0064
PRO 780.0078
GLU 790.0113
LEU 800.0100
GLN 810.0139
VAL 820.0126
LEU 830.0105
ASP 840.0116
LEU 850.0121
SER 860.0153
ARG 870.0164
CYS 880.0151
GLU 890.0157
ILE 900.0130
GLN 910.0126
THR 920.0109
ILE 930.0098
GLU 940.0088
ASP 950.0076
GLY 960.0072
ALA 970.0074
TYR 980.0069
GLN 990.0064
SER 1000.0057
LEU 1010.0072
SER 1020.0088
HIS 1030.0092
LEU 1040.0087
SER 1050.0101
THR 1060.0096
LEU 1070.0094
ILE 1080.0094
LEU 1090.0096
THR 1100.0107
GLY 1110.0115
ASN 1120.0109
PRO 1130.0100
ILE 1140.0088
GLN 1150.0082
SER 1160.0082
LEU 1170.0091
ALA 1180.0095
LEU 1190.0098
GLY 1200.0099
ALA 1210.0093
PHE 1220.0093
SER 1230.0103
GLY 1240.0103
LEU 1250.0096
SER 1260.0110
SER 1270.0115
LEU 1280.0087
GLN 1290.0072
LYS 1300.0050
LEU 1310.0046
VAL 1320.0060
ALA 1330.0066
VAL 1340.0076
GLU 1350.0089
THR 1360.0083
ASN 1370.0099
LEU 1380.0100
ALA 1390.0125
SER 1400.0121
LEU 1410.0102
GLU 1420.0126
ASN 1430.0125
PHE 1440.0101
PRO 1450.0110
ILE 1460.0098
GLY 1470.0107
HIS 1480.0120
LEU 1490.0102
LYS 1500.0111
THR 1510.0104
LEU 1520.0067
LYS 1530.0060
GLU 1540.0050
LEU 1550.0045
ASN 1560.0064
VAL 1570.0072
ALA 1580.0096
HIS 1590.0117
ASN 1600.0115
LEU 1610.0138
ILE 1620.0123
GLN 1630.0144
SER 1640.0126
PHE 1650.0106
LYS 1660.0096
LEU 1670.0084
PRO 1680.0102
GLU 1690.0110
TYR 1700.0111
PHE 1710.0083
SER 1720.0091
ASN 1730.0104
LEU 1740.0080
THR 1750.0091
ASN 1760.0088
LEU 1770.0052
GLU 1780.0068
HIS 1790.0072
LEU 1800.0068
ASP 1810.0090
LEU 1820.0101
SER 1830.0121
SER 1840.0138
ASN 1850.0133
LYS 1860.0149
ILE 1870.0130
GLN 1880.0142
SER 1890.0131
ILE 1900.0116
TYR 1910.0109
CYS 1920.0099
THR 1930.0089
ASP 1940.0090
LEU 1950.0081
ARG 1960.0075
VAL 1970.0070
LEU 1980.0072
HIS 1990.0076
GLN 2000.0083
MET 2010.0092
PRO 2020.0085
LEU 2030.0096
LEU 2040.0080
ASN 2050.0087
LEU 2060.0077
SER 2070.0101
LEU 2080.0103
ASP 2090.0112
LEU 2100.0118
SER 2110.0131
LEU 2120.0139
ASN 2130.0133
PRO 2140.0145
MET 2150.0137
ASN 2160.0144
PHE 2170.0136
ILE 2180.0125
GLN 2190.0118
PRO 2200.0124
GLY 2210.0116
ALA 2220.0111
PHE 2230.0116
LYS 2240.0127
GLU 2250.0130
ILE 2260.0119
ARG 2270.0110
LEU 2280.0106
HIS 2290.0107
LYS 2300.0106
LEU 2310.0107
THR 2320.0117
LEU 2330.0117
ARG 2340.0116
ASN 2350.0117
ASN 2360.0117
PHE 2370.0124
ASP 2380.0117
SER 2390.0115
LEU 2400.0116
ASN 2410.0126
VAL 2420.0129
MET 2430.0129
LYS 2440.0129
THR 2450.0134
CYS 2460.0136
ILE 2470.0126
GLN 2480.0130
GLY 2490.0125
LEU 2500.0125
ALA 2510.0132
GLY 2520.0131
LEU 2530.0118
GLU 2540.0119
VAL 2550.0106
HIS 2560.0105
ARG 2570.0088
LEU 2580.0086
VAL 2590.0084
LEU 2600.0084
GLY 2610.0088
GLU 2620.0101
PHE 2630.0109
ARG 2640.0100
ASN 2650.0102
GLU 2660.0095
GLY 2670.0093
ASN 2680.0091
LEU 2690.0093
GLU 2700.0091
LYS 2710.0090
PHE 2720.0104
ASP 2730.0107
LYS 2740.0106
SER 2750.0115
ALA 2760.0110
LEU 2770.0109
GLU 2780.0123
GLY 2790.0120
LEU 2800.0110
CYS 2810.0123
ASN 2820.0125
LEU 2830.0113
THR 2840.0113
ILE 2850.0097
GLU 2860.0095
GLU 2870.0064
PHE 2880.0062
ARG 2890.0061
LEU 2900.0067
ALA 2910.0071
TYR 2920.0088
LEU 2930.0083
ASP 2940.0083
TYR 2950.0083
TYR 2960.0087
LEU 2970.0099
ASP 2980.0106
GLY 2990.0095
ILE 3000.0085
ILE 3010.0087
ASP 3020.0098
LEU 3030.0092
PHE 3040.0082
ASN 3050.0088
CYS 3060.0088
LEU 3070.0063
THR 3080.0065
ASN 3090.0067
VAL 3100.0058
SER 3110.0057
SER 3120.0045
PHE 3130.0045
SER 3140.0052
LEU 3150.0059
VAL 3160.0068
SER 3170.0090
VAL 3180.0089
THR 3190.0095
ILE 3200.0092
GLU 3210.0098
ARG 3220.0089
VAL 3230.0075
LYS 3240.0070
ASP 3250.0073
PHE 3260.0063
SER 3270.0057
TYR 3280.0060
ASN 3290.0056
PHE 3300.0054
GLY 3310.0053
TRP 3320.0040
GLN 3330.0038
HIS 3340.0038
LEU 3350.0040
GLU 3360.0043
LEU 3370.0064
VAL 3380.0077
ASN 3390.0090
CYS 3400.0085
LYS 3410.0089
PHE 3420.0085
GLY 3430.0085
GLN 3440.0069
PHE 3450.0061
PRO 3460.0058
THR 3470.0054
LEU 3480.0052
LYS 3490.0050
LEU 3500.0050
LYS 3510.0047
SER 3520.0055
LEU 3530.0054
LYS 3540.0054
ARG 3550.0059
LEU 3560.0058
THR 3570.0072
PHE 3580.0068
THR 3590.0087
SER 3600.0100
ASN 3610.0089
LYS 3620.0097
GLY 3630.0088
GLY 3640.0073
ASN 3650.0066
ALA 3660.0056
PHE 3670.0053
SER 3680.0045
GLU 3690.0044
VAL 3700.0048
ASP 3710.0046
LEU 3720.0053
PRO 3730.0052
SER 3740.0057
LEU 3750.0065
GLU 3760.0082
PHE 3770.0098
LEU 3780.0092
ASP 3790.0097
LEU 3800.0089
SER 3810.0096
ARG 3820.0108
ASN 3830.0093
GLY 3840.0090
LEU 3850.0076
SER 3860.0066
PHE 3870.0061
LYS 3880.0046
GLY 3890.0062
CYS 3900.0082
CYS 3910.0099
SER 3920.0081
GLN 3930.0079
SER 3940.0055
ASP 3950.0051
PHE 3960.0067
GLY 3970.0040
THR 3980.0064
ILE 3990.0091
SER 4000.0109
LEU 4010.0112
LYS 4020.0151
TYR 4030.0142
LEU 4040.0121
ASP 4050.0118
LEU 4060.0097
SER 4070.0112
PHE 4080.0108
ASN 4090.0094
GLY 4100.0080
VAL 4110.0069
ILE 4120.0071
THR 4130.0062
MET 4140.0082
SER 4150.0086
SER 4160.0109
ASN 4170.0126
PHE 4180.0131
LEU 4190.0137
GLY 4200.0145
LEU 4210.0149
GLU 4220.0186
GLN 4230.0200
LEU 4240.0179
GLU 4250.0198
HIS 4260.0179
LEU 4270.0153
ASP 4280.0141
PHE 4290.0117
GLN 4300.0118
HIS 4310.0103
SER 4320.0097
ASN 4330.0071
LEU 4340.0072
LYS 4350.0057
GLN 4360.0068
MET 4370.0081
SER 4380.0086
GLU 4390.0102
PHE 4400.0127
SER 4410.0140
VAL 4420.0132
PHE 4430.0155
LEU 4440.0176
SER 4450.0195
LEU 4460.0195
ARG 4470.0235
ASN 4480.0245
LEU 4490.0213
ILE 4500.0220
TYR 4510.0193
LEU 4520.0159
ASP 4530.0140
ILE 4540.0110
SER 4550.0101
HIS 4560.0085
THR 4570.0077
HIS 4580.0040
THR 4590.0042
ARG 4600.0034
VAL 4610.0060
ALA 4620.0085
PHE 4630.0113
ASN 4640.0120
GLY 4650.0147
ILE 4660.0119
PHE 4670.0141
ASN 4680.0177
GLY 4690.0206
LEU 4700.0194
SER 4710.0219
SER 4720.0234
LEU 4730.0197
GLU 4740.0191
VAL 4750.0168
LEU 4760.0130
LYS 4770.0113
MET 4780.0080
ALA 4790.0077
GLY 4800.0070
ASN 4810.0035
SER 4820.0028
PHE 4830.0053
GLN 4840.0096
GLU 4850.0126
ASN 4860.0098
PHE 4870.0099
LEU 4880.0061
PRO 4890.0094
ASP 4900.0104
ILE 4910.0106
PHE 4920.0106
THR 4930.0142
GLU 4940.0174
LEU 4950.0150
ARG 4960.0156
ASN 4970.0169
LEU 4980.0128
THR 4990.0129
PHE 5000.0114
LEU 5010.0071
ASP 5020.0065
LEU 5030.0041
SER 5040.0075
GLN 5050.0087
CYS 5060.0058
GLN 5070.0092
LEU 5080.0085
GLU 5090.0117
GLN 5100.0112
LEU 5110.0089
SER 5120.0107
PRO 5130.0107
THR 5140.0093
ALA 5150.0066
PHE 5160.0036
ASN 5170.0075
SER 5180.0087
LEU 5190.0059
SER 5200.0056
SER 5210.0074
LEU 5220.0036
GLN 5230.0062
VAL 5240.0069
LEU 5250.0051
ASN 5260.0070
MET 5270.0084
SER 5280.0102
HIS 5290.0117
ASN 5300.0111
ASN 5310.0124
PHE 5320.0105
PHE 5330.0102
SER 5340.0099
LEU 5350.0097
ASP 5360.0096
THR 5370.0099
PHE 5380.0096
PRO 5390.0081
TYR 5400.0080
LYS 5410.0087
CYS 5420.0059
LEU 5430.0044
ASN 5440.0040
SER 5450.0039
LEU 5460.0056
GLN 5470.0080
VAL 5480.0085
LEU 5490.0089
ASP 5500.0096
TYR 5510.0105
SER 5520.0107
LEU 5530.0112
ASN 5540.0110
HIS 5550.0104
ILE 5560.0095
MET 5570.0066
THR 5580.0065
SER 5590.0070
LYS 5600.0076
LYS 5610.0081
GLN 5620.0077
GLU 5630.0090
LEU 5640.0084
GLN 5650.0099
HIS 5660.0110
PHE 5670.0104
PRO 5680.0098
SER 5690.0106
SER 5700.0096
LEU 5710.0097
ALA 5720.0090
PHE 5730.0096
LEU 5740.0095
ASN 5750.0102
LEU 5760.0098
THR 5770.0098
GLN 5780.0090
ASN 5790.0075
ASP 5800.0053
PHE 5810.0036
ALA 5820.0039
CYS 5830.0072
THR 5840.0116
CYS 5850.0141
GLU 5860.0143
HIS 5870.0068
GLN 5880.0061
SER 5890.0052
PHE 5900.0043
LEU 5910.0016
GLN 5920.0010
TRP 5930.0043
ILE 5940.0059
LYS 5950.0065
ASP 5960.0063
GLN 5970.0079
ARG 5980.0082
GLN 5990.0104
LEU 6000.0105
LEU 6010.0091
VAL 6020.0134
GLU 6030.0138
VAL 6040.0105
GLU 6050.0127
ARG 6060.0120
MET 6070.0098
GLU 6080.0086
CYS 6090.0057
ALA 6100.0039
THR 6110.0058
PRO 6120.0132
SER 6130.0148
ASP 6140.0199
LYS 6150.0158
GLN 6160.0125
GLY 6170.0139
MET 6180.0145
PRO 6190.0132
VAL 6200.0081
LEU 6210.0105
SER 6220.0172
LEU 6230.0140
ASN 6240.0173
ILE 6250.0134
THR 6260.0189
CYS 6270.0313
GLU 10.0296
ALA 20.0193
ALA 30.0053
ALA 40.0120
LYS 50.0066
MET 60.0134
GLN 70.0151
ARG 80.0121
LEU 90.0165
VAL 100.0241
LEU 110.0172
LEU 120.0186
LEU 130.0149
ALA 140.0110
ILE 150.0131
SER 160.0168
LEU 170.0166
LEU 180.0114
LEU 190.0049
TYR 200.0231
GLN 210.0285
ASP 220.0186
LEU 230.0136
PRO 240.0261
VAL 250.0396
ARG 260.0199
SER 270.0139
GLU 280.0118
PHE 290.0061
GLU 300.0052
LEU 310.0055
ASP 320.0069
ARG 330.0045
ILE 340.0021
CYS 350.0041
GLY 360.0037
TYR 370.0068
GLY 380.0028
THR 390.0041
ALA 400.0032
ARG 410.0070
CYS 420.0100
ARG 430.0146
LYS 440.0194
LYS 450.0207
CYS 460.0150
ARG 470.0153
SER 480.0178
GLN 490.0165
GLU 500.0151
TYR 510.0167
ARG 520.0145
ILE 530.0100
GLY 540.0101
ARG 550.0128
CYS 560.0128
PRO 570.0167
ASN 580.0198
THR 590.0203
TYR 600.0184
ALA 610.0137
CYS 620.0102
CYS 630.0113
LEU 640.0108
ARG 650.0130
LYS 660.0163
TRP 670.0165
ASP 680.0134
GLU 690.0132
SER 700.0122
LEU 710.0141
LEU 720.0152
ASN 730.0140
ARG 740.0151
THR 750.0176
LYS 760.0150
PRO 770.0152
GLU 780.0151
ALA 790.0149
ALA 800.0155
ALA 810.0060
LYS 820.0055
LYS 830.0047
GLU 840.0046
MET 850.0048
ASN 860.0033
LEU 870.0034
SER 880.0037
VAL 890.0036
GLY 900.0065
LEU 910.0105
GLY 920.0200
GLY 930.0324
GLY 940.0325
SER 950.0242
ASN 960.0106
LEU 970.0081
SER 980.0054
VAL 990.0053
GLY 1000.0055
LEU 1010.0063
GLY 1020.0059
GLU 1030.0040
ILE 1040.0039
GLY 1050.0046
GLY 1060.0078
GLY 1070.0062
SER 1080.0050
LYS 1090.0034
LEU 1100.0035
LEU 1110.0037
ASP 1120.0045
ILE 1130.0027
ASN 1140.0056
LEU 1150.0039
GLY 1160.0066
ARG 1170.0085
GLY 1180.0105
GLY 1190.0090
GLY 1200.0058
SER 1210.0034
MET 1220.0030
VAL 1230.0037
ASP 1240.0042
LEU 1250.0055
THR 1260.0059
PHE 1270.0069
GLY 1280.0081
GLY 1290.0082
VAL 1300.0095
GLY 1310.0089
GLY 1320.0083
GLY 1330.0053
SER 1340.0079
THR 1350.0077
PHE 1360.0104
THR 1370.0106
PHE 1380.0081
PHE 1390.0085
PRO 1400.0070
LEU 1410.0049
VAL 1420.0164
ILE 1430.0238
GLY 1440.0360
GLY 1450.0482
GLY 1460.0433
SER 1470.0326
ASP 1480.0202
ALA 1490.0159
MET 1500.0064
TYR 1510.0051
LEU 1520.0042
GLY 1530.0061
PHE 1540.0092
ALA 1550.0124
ALA 1560.0132
GLY 1570.0094
GLY 1580.0041
GLY 1590.0034
SER 1600.0008
ALA 1610.0035
GLY 1620.0026
GLY 1630.0033
GLU 1640.0041
ASN 1650.0023
HIS 1660.0043
VAL 1670.0039
ALA 1680.0033
PHE 1690.0036
GLY 1700.0026
PRO 1710.0112
GLY 1720.0136
PRO 1730.0153
GLY 1740.0100
VAL 1750.0046
ASP 1760.0053
LEU 1770.0056
THR 1780.0072
PHE 1790.0080
GLY 1800.0105
GLY 1810.0198
VAL 1820.0203
GLN 1830.0164
PHE 1840.0151
ALA 1850.0137
MET 1860.0056
VAL 1870.0069
ASN 1880.0061
ASN 1890.0100
GLY 1900.0087
PRO 1910.0182
GLY 1920.0172
PRO 1930.0098
GLY 1940.0100
GLU 1950.0104
SER 1960.0125
PHE 1970.0085
THR 1980.0059
ALA 1990.0030
GLN 2000.0014
PRO 2010.0024
ALA 2020.0032
ASP 2030.0043
MET 2040.0033
GLN 2050.0021
ALA 2060.0032
GLY 2070.0048
ILE 2080.0053
LYS 2090.0048
GLY 2100.0083
PRO 2110.0045
GLY 2120.0055
PRO 2130.0040
GLY 2140.0038
GLY 2150.0080
SER 2160.0057
ILE 2170.0047
GLN 2180.0053
VAL 2190.0075
ILE 2200.0100
ASN 2210.0121
GLY 2220.0091
SER 2230.0052
THR 2240.0020
ILE 2250.0024
GLY 2260.0042
THR 2270.0035
GLY 2280.0031
SER 2290.0040
LYS 2300.0041
LYS 2310.0039
THR 2320.0048
ILE 2330.0047
LEU 2340.0063
ILE 2350.0065
TYR 2360.0069
SER 2370.0056
ILE 2380.0046
ILE 2390.0025
GLY 2400.0030
VAL 2410.0057
LYS 2420.0056
LYS 2430.0063
GLY 2440.0061
THR 2450.0053
LEU 2460.0043
ALA 2470.0022
TRP 2480.0028
ALA 2490.0042
ARG 2500.0065
THR 2510.0080
GLY 2520.0073
PHE 2530.0060
SER 2540.0048
PRO 2550.0062
ALA 2560.0085
LYS 2570.0068
LYS 2580.0051
LEU 2590.0099
ASN 2600.0155
ALA 2610.0133
GLY 2620.0060
VAL 2630.0046
VAL 2640.0025
ARG 2650.0089
VAL 2660.0041
PHE 2670.0046
PHE 2680.0101
LEU 2690.0151
ASN 2700.0216
GLN 2710.0187
LYS 2720.0134
LYS 2730.0148
ALA 2740.0184
LYS 2750.0148
ASP 2760.0150
VAL 2770.0167
LEU 2780.0162
ARG 2790.0137
LYS 2800.0141
THR 2810.0172
SER 2820.0084
ARG 2830.0093
PRO 2840.0110
MET 2850.0088
VAL 2860.0133
ASP 2870.0077
LEU 2880.0042
THR 2890.0039
PHE 2900.0059
GLY 2910.0038
GLY 2920.0103

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.